Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007192

Physical Location & Seq

Genomic Coordinates Forward (+)

17701562 .. 17703747

Gene Structure 2186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g15030.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAGTACAGCAATGATGATACGAATCTTTCTTCTGGAAATTCATCGGAAGACGAACTCAGCGATCAATTCACCGATTCGGGTACCACCGACTCTGCCTCAGAGACCGTCCAGTCGTCCATCTCCGACTGTGAAAGCGTTGTCGATTCGGGTTCTTCAAGTTCCCGGAATCAACCTCGGCCATTCGGTGATGGGTTGGTCCCGCTTTTCGACGGGGACAGAGTTCACGACCTTATCAAGCAGCGGTTCGTTTCGAGTTTGGGATTGCTTGGGACCCAAGTAAGTGTTGTGGCGGTTCACAGAAACTCCTACTCGAGCCTCGTGGGTCAAGCAAGGCTACGTTCGTTTCAAATTTACTTGAAAGCGGTGGAGGAGAAGTGCGGGGGAAATCCCAACATGAAGTACGCTTGGTACGCGCCCTATTCGAAAGATGAGATTTCGAAGATCATATGCCATGGTTTCGGAAACTTTGAGCAGCAACAGAGAAATGGGGTGTATGGCAATGGTGTTTATCTTGCTCCCGATGATTCTCCTATGCAATGTTTGGAAAGCTTGAATGTTGACGAAGACGGTTTACGCCATCTTTTGCTCTGCCGTGTCATATTGGGGAGGCCGGAGGTTGTGTGCCCTGGCTCTAAACAGCTTCATCCGAGCTCCGAACAGTTCGATTCGGGCATCGACAGCATCTTTGCTCCCAAAAAGTACATAGTTTGGAGTACACACATGAACACTCACATCTTGCCGGAGTATGTCATCAGTTTCAGAGCTCCTAATTGCTTGAAAGATTTCTTGAAGATTCAAGAACCAATCAAGAAACCGACTTCACCGTGGATGCCATTTCAGGCGCTAATCGGCGTGCTTTCGAAGTTCTTGCCTCCACCTACCATTGCCTTGATCAGCAAGTATTACAAAGAACACAGAGCGAATGTGATCACAAGGCAACAACTAATACAAAAAGTGAGACAAATTGCAGGAGACGAGTTGCTGGTTTCAATTATCAAATCTTTTAGAGCCAAGCAAATCAAACCACTGCAAAGGGTTGCTCAAAATGGAGGCAGGAGTAGGATGGACGGTGTAGATGCGCCAATTTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0072593

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PARP RST

Protein Analysis

366

Amino Acids

40.67

Weight (kDa)

6.71

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47720 AT5G62520 AT5G62520
fragaria_vesca	FvH4_5g05320
malus_domestica	MD06G1173800.v1.1 MD14G1180300.v1.1
prunus_persica	Prupe.5G173700_v2.0.a1 Prupe.5G173700_v2.0.a1
pyrus_communis	pycom06g15500 pycom14g15030
rosa_chinensis	RchiOBHm_Chr7g0193541
rosa_laevigata	RLG00000004264
rosa_multiflora	Rmu_co8208784.1_g000001 Rmu_sc0000282.1_g000002 Rmu_sc0006688.1_g000001 Rmu_sc0029611.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262020
rosa_rugosa	Rorug07G0010000 Rorug07G0010000 Rorug07G0010100
rosa_samantha	Rh7AG136900 Rh7BG137200 Rh7CG140500 Rh7DG138300
rosa_wichuraiana	Rw7G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	112
Acc65I	GGTACC	1 cut(s)	83
AccB1I	GGYRCC	1 cut(s)	83
AccII	CGCG	1 cut(s)	416
AciI	CCGC	5 cut(s)	203, 244, 293, 365, 381
AcoI	YGGCCR	1 cut(s)	179
AcsI	RAATTY	2 cut(s)	40, 351
AfaI	GTAC	6 cut(s)	8, 85, 404, 413, 704, 718
AgsI	TTSAA	8 cut(s)	159, 350, 361, 556, 781, 793, 800, 993
AjnI	CCWGG	1 cut(s)	628
AluBI	AGCT	4 cut(s)	552, 643, 654, 767
AluI	AGCT	4 cut(s)	552, 643, 654, 767
Alw21I	GWGCWC	2 cut(s)	656, 769
Alw26I	GTCTC	3 cut(s)	98, 955, 969
Ama87I	CYCGRG	1 cut(s)	313
AoxI	GGCC	2 cut(s)	179, 611
ApeKI	GCWGC	2 cut(s)	241, 475
ApoI	RAATTY	2 cut(s)	40, 351
ArsI	GACNNNNNNTTYG	2 cut(s)	671, 703
Asp700I	GAANNNNTTC	1 cut(s)	785
Asp718I	GGTACC	1 cut(s)	83
AspLEI	GCGC	3 cut(s)	418, 847, 1084
AspS9I	GGNCC	2 cut(s)	199, 273
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	3 cut(s)	64, 200, 816
AsuII	TTCGAA	3 cut(s)	425, 440, 863
AvaI	CYCGRG	1 cut(s)	313
AvaII	GGWCC	2 cut(s)	199, 273
BaeGI	GKGCMC	1 cut(s)	629
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	2 cut(s)	656, 769
BarI	GAAGNNNNNNTAC	2 cut(s)	558, 590
BauI	CACGAG	1 cut(s)	320
BbsI	GAAGAC	2 cut(s)	57, 573
Bbv12I	GWGCWC	2 cut(s)	656, 769
BbvI	GCAGC	2 cut(s)	253, 487
BccI	CCATC	4 cut(s)	128, 185, 588, 1060
BceAI	ACGGC	1 cut(s)	579
BcgI	CGANNNNNNTGC	2 cut(s)	853, 887
BciT130I	CCWGG	1 cut(s)	630
BclI	TGATCA	2 cut(s)	894, 930
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	3 cut(s)	98, 955, 969
BfoI	RGCGCY	1 cut(s)	848
BisI	GCNGC	2 cut(s)	242, 476
BlsI	GCNGC	2 cut(s)	243, 477
Bme1390I	CCNGG	2 cut(s)	166, 630
Bme18I	GGWCC	2 cut(s)	199, 273
BmeT110I	CYCGRG	1 cut(s)	313
BmgT120I	GGNCC	2 cut(s)	199, 273
BmiI	GGNNCC	4 cut(s)	85, 201, 274, 275
BmrFI	CCNGG	2 cut(s)	166, 630
BmsI	GCATC	4 cut(s)	684, 693, 822, 1069
BpiI	GAAGAC	2 cut(s)	57, 573
Bpu14I	TTCGAA	3 cut(s)	425, 440, 863
BpuMI	CCSGG	1 cut(s)	166
BsaBI	GATNNNNATC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	4 cut(s)	176, 454, 628, 827
BsaXI	ACNNNNNCTCC	6 cut(s)	290, 320, 362, 392, 608, 638
Bse1I	ACTGG	1 cut(s)	112
Bse3DI	GCAATG	4 cut(s)	19, 508, 545, 885
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	630
BseDI	CCNNGG	4 cut(s)	176, 454, 628, 827
BseGI	GGATG	3 cut(s)	646, 837, 1071
BseJI	GATNNNNATC	1 cut(s)	24
BseMI	GCAATG	4 cut(s)	19, 508, 545, 885
BseMII	CTCAG	2 cut(s)	73, 114
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	386
BseSI	GKGCMC	1 cut(s)	629
BseXI	GCAGC	2 cut(s)	253, 487
Bsh1236I	CGCG	1 cut(s)	416
BshFI	GGCC	2 cut(s)	181, 613
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	2 cut(s)	656, 769
BsiHKCI	CYCGRG	1 cut(s)	313
BsiSI	CCGG	3 cut(s)	166, 614, 743
BslFI	GGGAC	3 cut(s)	185, 230, 286
BsmAI	GTCTC	3 cut(s)	98, 955, 969
BsmBI	CGTCTC	1 cut(s)	969
BsmFI	GGGAC	3 cut(s)	185, 230, 286
BsnI	GGCC	2 cut(s)	181, 613
Bso31I	GGTCTC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	313
Bsp119I	TTCGAA	3 cut(s)	425, 440, 863
Bsp1286I	GDGCHC	3 cut(s)	629, 656, 769
Bsp143I	GATC	4 cut(s)	64, 444, 894, 930
Bsp19I	CCATGG	1 cut(s)	454
BspACI	CCGC	5 cut(s)	203, 244, 293, 365, 381
BspANI	GGCC	2 cut(s)	181, 613
BspCNI	CTCAG	2 cut(s)	72, 113
BspFNI	CGCG	1 cut(s)	416
BspLI	GGNNCC	4 cut(s)	85, 201, 274, 275
BspT104I	TTCGAA	3 cut(s)	425, 440, 863
BspT107I	GGYRCC	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	98
BsrDI	GCAATG	4 cut(s)	19, 508, 545, 885
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	4 cut(s)	176, 454, 628, 827
BssMI	GATC	4 cut(s)	64, 444, 894, 930
BssSI	CACGAG	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	454
Bst2BI	CACGAG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	6 cut(s)	109, 131, 572, 663, 828, 1073
BstBI	TTCGAA	3 cut(s)	425, 440, 863
BstC8I	GCNNGC	1 cut(s)	857
BstDEI	CTNAG	2 cut(s)	59, 100
BstDSI	CCRYGG	2 cut(s)	454, 827
BstF5I	GGATG	3 cut(s)	646, 837, 1071
BstFNI	CGCG	1 cut(s)	416
BstH2I	RGCGCY	1 cut(s)	848
BstHHI	GCGC	3 cut(s)	418, 847, 1084
BstKTI	GATC	4 cut(s)	67, 447, 897, 933
BstMAI	GTCTC	3 cut(s)	98, 955, 969
BstMBI	GATC	4 cut(s)	64, 444, 894, 930
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 681
BstNI	CCWGG	1 cut(s)	630
BstSCI	CCNGG	2 cut(s)	164, 628
BstSLI	GKGCMC	1 cut(s)	629
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	2 cut(s)	253, 487
BstV2I	GAAGAC	2 cut(s)	57, 573
BsuRI	GGCC	2 cut(s)	181, 613
BtgI	CCRYGG	2 cut(s)	454, 827
BtsCI	GGATG	3 cut(s)	646, 837, 1071
BtsI	GCAGTG	1 cut(s)	1028
BtsIMutI	CAGTG	1 cut(s)	1028
Cac8I	GCNNGC	1 cut(s)	857
CfoI	GCGC	3 cut(s)	418, 847, 1084
Cfr13I	GGNCC	2 cut(s)	199, 273
Csp6I	GTAC	6 cut(s)	7, 84, 403, 412, 703, 717
CviAII	CATG	3 cut(s)	397, 455, 724
CviQI	GTAC	6 cut(s)	7, 84, 403, 412, 703, 717
DdeI	CTNAG	2 cut(s)	59, 100
DpnI	GATC	4 cut(s)	66, 446, 896, 932
DpnII	GATC	4 cut(s)	64, 444, 894, 930
DrdI	GACNNNNNNGTC	1 cut(s)	112
DseDI	GACNNNNNNGTC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	179
Ecl136II	GAGCTC	2 cut(s)	654, 767
Eco130I	CCWWGG	1 cut(s)	454
Eco24I	GRGCYC	2 cut(s)	656, 769
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	2 cut(s)	199, 273
Eco53kI	GAGCTC	2 cut(s)	654, 767
Eco88I	CYCGRG	1 cut(s)	313
EcoICRI	GAGCTC	2 cut(s)	654, 767
EcoO109I	RGGNCCY	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	454
EcoT38I	GRGCYC	2 cut(s)	656, 769
ErhI	CCWWGG	1 cut(s)	454
Esp3I	CGTCTC	1 cut(s)	969
FaeI	CATG	3 cut(s)	400, 458, 727
FaqI	GGGAC	3 cut(s)	185, 230, 286
FatI	CATG	3 cut(s)	396, 454, 723
FauI	CCCGC	2 cut(s)	210, 374
FauNDI	CATATG	1 cut(s)	449
FbaI	TGATCA	2 cut(s)	894, 930
Fnu4HI	GCNGC	2 cut(s)	242, 476
FokI	GGATG	3 cut(s)	633, 844, 1078
FriOI	GRGCYC	2 cut(s)	656, 769
Fsp4HI	GCNGC	2 cut(s)	242, 476
GlaI	GCGC	3 cut(s)	417, 846, 1083
GluI	GCNGC	2 cut(s)	242, 476
HaeII	RGCGCY	1 cut(s)	848
HaeIII	GGCC	2 cut(s)	181, 613
HapII	CCGG	3 cut(s)	166, 614, 743
HhaI	GCGC	3 cut(s)	418, 847, 1084
Hin1II	CATG	3 cut(s)	400, 458, 727
Hin6I	GCGC	3 cut(s)	416, 845, 1082
HinP1I	GCGC	3 cut(s)	416, 845, 1082
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HindIII	AAGCTT	1 cut(s)	550
HinfI	GANTC	8 cut(s)	25, 77, 92, 146, 169, 527, 668, 796
HpaII	CCGG	3 cut(s)	166, 614, 743
HphI	GGTGA	3 cut(s)	64, 200, 816
Hpy166II	GTNNAC	5 cut(s)	226, 298, 562, 575, 719
Hpy188I	TCNGA	7 cut(s)	49, 103, 127, 464, 651, 658, 764
Hpy188III	TCNNGA	6 cut(s)	36, 227, 521, 790, 800, 811
Hpy8I	GTNNAC	5 cut(s)	226, 298, 562, 575, 719
Hpy99I	CGWCG	1 cut(s)	215
HpyCH4III	ACNGT	6 cut(s)	109, 131, 572, 663, 828, 1073
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	3 cut(s)	538, 971, 1033
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 681
HpyF3I	CTNAG	2 cut(s)	59, 100
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	3 cut(s)	400, 458, 727
HspAI	GCGC	3 cut(s)	416, 845, 1082
KflI	GGGWCCC	1 cut(s)	273
KpnI	GGTACC	1 cut(s)	87
Ksp22I	TGATCA	2 cut(s)	894, 930
Kzo9I	GATC	4 cut(s)	64, 444, 894, 930
LmnI	GCTCC	4 cut(s)	523, 659, 697, 772
Lsp1109I	GCAGC	2 cut(s)	253, 487
LweI	GCATC	4 cut(s)	684, 693, 822, 1069
MaeII	ACGT	1 cut(s)	340
MalI	GATC	4 cut(s)	66, 446, 896, 932
MboI	GATC	4 cut(s)	64, 444, 894, 930
MboII	GAAGA	6 cut(s)	24, 62, 147, 454, 578, 805
MhlI	GDGCHC	3 cut(s)	629, 656, 769
MluCI	AATT	7 cut(s)	40, 68, 351, 772, 966, 993, 1086
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	8 cut(s)	109, 186, 329, 364, 603, 610, 885, 1046
MroXI	GAANNNNTTC	1 cut(s)	785
MspA1I	CMGCKG	1 cut(s)	244
MspI	CCGG	3 cut(s)	166, 614, 743
MspR9I	CCNGG	2 cut(s)	166, 630
MvaI	CCWGG	1 cut(s)	630
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	413, 681
NciI	CCSGG	1 cut(s)	166
NcoI	CCATGG	1 cut(s)	454
NdeI	CATATG	1 cut(s)	449
NdeII	GATC	4 cut(s)	64, 444, 894, 930
NlaIII	CATG	3 cut(s)	400, 458, 727
NlaIV	GGNNCC	4 cut(s)	85, 201, 274, 275
NmeAIII	GCCGAG	1 cut(s)	157
NspV	TTCGAA	3 cut(s)	425, 440, 863
PaeR7I	CTCGAG	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	785
PfeI	GAWTC	7 cut(s)	25, 77, 146, 169, 527, 668, 796
PfoI	TCCNGGA	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	243, 477
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PpuMI	RGGWCCY	1 cut(s)	273
Psp124BI	GAGCTC	2 cut(s)	656, 769
Psp5II	RGGWCCY	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	4 cut(s)	85, 201, 274, 275
PspPI	GGNCC	2 cut(s)	199, 273
PspPPI	RGGWCCY	1 cut(s)	273
PspXI	VCTCGAGB	1 cut(s)	313
RsaI	GTAC	6 cut(s)	8, 85, 404, 413, 704, 718
RsaNI	GTAC	6 cut(s)	7, 84, 403, 412, 703, 717
SacI	GAGCTC	2 cut(s)	656, 769
SatI	GCNGC	2 cut(s)	242, 476
Sau3AI	GATC	4 cut(s)	64, 444, 894, 930
Sau96I	GGNCC	2 cut(s)	199, 273
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	166, 630
SduI	GDGCHC	3 cut(s)	629, 656, 769
SetI	ASST	9 cut(s)	178, 234, 343, 554, 621, 645, 656, 769, 883
SfaNI	GCATC	4 cut(s)	684, 693, 822, 1069
Sfr274I	CTCGAG	1 cut(s)	313
SfuI	TTCGAA	3 cut(s)	425, 440, 863
SinI	GGWCC	2 cut(s)	199, 273
SlaI	CTCGAG	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	7 cut(s)	40, 68, 351, 772, 966, 993, 1086
SsiI	CCGC	5 cut(s)	203, 244, 293, 365, 381
SstI	GAGCTC	2 cut(s)	656, 769
StyD4I	CCNGG	2 cut(s)	164, 628
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	6 cut(s)	109, 131, 572, 663, 828, 1073
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	9 cut(s)	144, 210, 254, 314, 425, 440, 666, 678, 863
TasI	AATT	7 cut(s)	40, 68, 351, 772, 966, 993, 1086
TatI	WGTACW	3 cut(s)	6, 702, 716
TfiI	GAWTC	7 cut(s)	25, 77, 146, 169, 527, 668, 796
TscAI	CASTG	1 cut(s)	1035
TseI	GCWGC	2 cut(s)	241, 475
TspDTI	ATGAA	4 cut(s)	33, 413, 635, 740
TspRI	CASTG	1 cut(s)	1035
VpaK11BI	GGWCC	2 cut(s)	199, 273
XapI	RAATTY	2 cut(s)	40, 351
XhoI	CTCGAG	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.