Rh7AG136900
NAC Family

inactive poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0007192
Physical Location & Seq
Forward (+)
10949378 .. 10953783
4406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG136900.1

Sequence Viewer

Length: 1089 bp
ATGGAATACAGTGGTGTTCAACGTCCGTTATCCTCTGTTTTCGCCGATGGGTTCACAGCCTCGCTGCCGCCGCCGCCGCCGCCGCCGCCTAACGCTTGCGAACTCTCCGATCAGGTTTCCGATTCCGTCACCACAGAGACGTCCTCAGGGAGCTCCGACGATCAAGAATCATCGGTCTCCGATTGCGAAAGCAGCGTCACGAGCCGCGGCGGCGACGACCGTAGCCGGTTGTTGGACGCCGGGTTAGTGAAACTTGGAGAAGGGGACAGAGTCCACGACCTCATCAAGCAAAGGTTTCTTGCGAGTTTGGGATTGCTTGGAGCGCACGTCACCGTTACGGCGATTAATAGAAACTCCCATTCGGGTTTTACGGGTCAAGCGCGGCTGCACGCGTTTCGGGTTTACTTGAAAGCTGTGGAGGACAAGTGTGGTGGAAACGCCAATGTGAAATATGGTTGGTATTCTCCGAGTTCGAAAGCCGAGATTTCGAAGATCATTGGCCATGGATTTGGGCACTGTGAAAAGATCAACGGGGTTTATGGTAGAGGTGTCTATCTTGCTCCTGATGATTCACCTTTGGAATGTTTGGAAAACTTGAGTGAAGATGAAGACGGTCTTCGGCATCTTTTGCTTTGCCGCGTGATTTTGGGGAAGCCGGAAGCTGTGCTGCCTGGTAATTCTGAACAGTATCATCCCAGTTCGCAAGAGTTTGATTCGGGTGTGGATACGCTTTTCGCTCCCAAGAAGTATATAGTGTGGAGTACTCACATGAACACTCATATCTTGCCGGAGTATGTCATCAGCTTCAGAGCTCCTACTTGCCTGAAAGAGTTCTTGAAGACTCGGGAACCAATTAGAAAGCCAACTTCACCATGGATGCCAATTCCAACTCTAATCAGTGTGCTTTCGAAGTTCTTGCCTCAGCCTAGCATTGCTTTGATCATCAAGTATCATAAAGCCCACAGAGTATGTACTTGCTCCCCAATCCTCCTTGCATTTGTATCTCTCTATTTCTATTACGACATTGGCCTTATTTTTGTGTATCCTTTTCTCTGTTTTAGGAAACGAAGATCTCAAGGAGTGAACTAA

Protein Analysis

362

Amino Acids

39.92

Weight (kDa)

6.86

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 287 - 322 5.2e-08 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 143
AccII CGCG 4 cut(s) 207, 382, 392, 639
AcoI YGGCCR 1 cut(s) 499
AcuI CTGAAG 1 cut(s) 790
AcyI GRCGYC 2 cut(s) 140, 237
AfaI GTAC 2 cut(s) 763, 973
AfiI CCNNNNNNNGG 1 cut(s) 232
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 3 cut(s) 20, 409, 838
AjiI CACGTC 1 cut(s) 328
AjnI CCWGG 1 cut(s) 670
AluBI AGCT 5 cut(s) 153, 413, 662, 804, 812
AluI AGCT 5 cut(s) 153, 413, 662, 804, 812
Alw21I GWGCWC 2 cut(s) 155, 814
Alw26I GTCTC 2 cut(s) 131, 181
Ama87I CYCGRG 1 cut(s) 843
AoxI GGCC 2 cut(s) 499, 1027
ApeKI GCWGC 4 cut(s) 64, 192, 385, 667
ArsI GACNNNNNNTTYG 2 cut(s) 180, 212
AseI ATTAAT 1 cut(s) 345
Asp700I GAANNNNTTC 1 cut(s) 830
AspLEI GCGC 2 cut(s) 325, 382
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 4 cut(s) 121, 322, 564, 861
AsuII TTCGAA 3 cut(s) 473, 488, 908
AvaI CYCGRG 1 cut(s) 843
AxyI CCTNAGG 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 516
BalI TGGCCA 1 cut(s) 501
BanII GRGCYC 2 cut(s) 155, 814
BauI CACGAG 1 cut(s) 199
BbsI GAAGAC 3 cut(s) 608, 615, 845
Bbv12I GWGCWC 2 cut(s) 155, 814
BbvCI CCTCAGC 1 cut(s) 921
BbvI GCAGC 4 cut(s) 51, 204, 372, 654
BccI CCATC 1 cut(s) 41
BceAI ACGGC 1 cut(s) 354
BcgI CGANNNNNNTGC 4 cut(s) 377, 411, 898, 932
BciT130I CCWGG 1 cut(s) 672
BciVI GTATCC 2 cut(s) 718, 1053
BclI TGATCA 1 cut(s) 939
BcnI CCSGG 1 cut(s) 241
BcoDI GTCTC 2 cut(s) 131, 181
BfaI CTAG 1 cut(s) 927
BfuI GTATCC 2 cut(s) 718, 1053
BglI GCCNNNNNGGC 1 cut(s) 210
BglII AGATCT 1 cut(s) 1070
BmcAI AGTACT 1 cut(s) 763
Bme1390I CCNGG 2 cut(s) 241, 672
BmeT110I CYCGRG 1 cut(s) 843
BmgBI CACGTC 1 cut(s) 328
BmiI GGNNCC 1 cut(s) 849
BmrFI CCNGG 2 cut(s) 241, 672
BmrI ACTGGG 1 cut(s) 690
BmsI GCATC 2 cut(s) 631, 867
BmuI ACTGGG 1 cut(s) 690
BpiI GAAGAC 3 cut(s) 608, 615, 845
BplI GAGNNNNNCTC 2 cut(s) 128, 160
Bpu10I CCTNAGC 1 cut(s) 921
Bpu14I TTCGAA 3 cut(s) 473, 488, 908
BpuEI CTTGAG 2 cut(s) 616, 1059
BpuMI CCSGG 1 cut(s) 241
BsaHI GRCGYC 2 cut(s) 140, 237
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 3 cut(s) 205, 502, 872
BsaXI ACNNNNNCTCC 4 cut(s) 312, 342, 410, 440
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse118I RCCGGY 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 696
Bse21I CCTNAGG 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 930
BseBI CCWGG 1 cut(s) 672
BseDI CCNNGG 3 cut(s) 205, 502, 872
BseGI GGATG 2 cut(s) 691, 882
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMI GCAATG 1 cut(s) 930
BseMII CTCAG 2 cut(s) 159, 935
BseNI ACTGG 1 cut(s) 696
BseSI GKGCMC 1 cut(s) 516
BseXI GCAGC 4 cut(s) 51, 204, 372, 654
BsgI GTGCAG 1 cut(s) 371
Bsh1236I CGCG 4 cut(s) 207, 382, 392, 639
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 2 cut(s) 501, 1029
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 2 cut(s) 155, 814
BsiHKCI CYCGRG 1 cut(s) 843
BsiSI CCGG 4 cut(s) 226, 240, 656, 788
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 2 cut(s) 131, 181
BsmBI CGTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 2 cut(s) 501, 1029
Bso31I GGTCTC 1 cut(s) 181
BsoBI CYCGRG 1 cut(s) 843
Bsp119I TTCGAA 3 cut(s) 473, 488, 908
Bsp1286I GDGCHC 3 cut(s) 155, 516, 814
Bsp143I GATC 6 cut(s) 109, 160, 492, 525, 939, 1070
Bsp19I CCATGG 2 cut(s) 502, 872
BspANI GGCC 2 cut(s) 501, 1029
BspCNI CTCAG 2 cut(s) 158, 934
BspFNI CGCG 4 cut(s) 207, 382, 392, 639
BspLI GGNNCC 1 cut(s) 849
BspT104I TTCGAA 3 cut(s) 473, 488, 908
BspTNI GGTCTC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 930
BsrFI RCCGGY 1 cut(s) 225
BsrI ACTGG 1 cut(s) 696
BssAI RCCGGY 1 cut(s) 225
BssECI CCNNGG 3 cut(s) 205, 502, 872
BssMI GATC 6 cut(s) 109, 160, 492, 525, 939, 1070
BssNI GRCGYC 2 cut(s) 140, 237
BssSI CACGAG 1 cut(s) 199
BssT1I CCWWGG 2 cut(s) 502, 872
Bst2BI CACGAG 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 672
Bst4CI ACNGT 6 cut(s) 11, 221, 334, 518, 614, 687
BstACI GRCGYC 2 cut(s) 140, 237
BstAPI GCANNNNNTGC 1 cut(s) 628
BstBI TTCGAA 3 cut(s) 473, 488, 908
BstC8I GCNNGC 2 cut(s) 97, 390
BstDEI CTNAG 2 cut(s) 145, 921
BstDSI CCRYGG 3 cut(s) 205, 502, 872
BstF5I GGATG 2 cut(s) 691, 882
BstFNI CGCG 4 cut(s) 207, 382, 392, 639
BstHHI GCGC 2 cut(s) 325, 382
BstKTI GATC 6 cut(s) 112, 163, 495, 528, 942, 1073
BstMAI GTCTC 2 cut(s) 131, 181
BstMBI GATC 6 cut(s) 109, 160, 492, 525, 939, 1070
BstMCI CGRYCG 1 cut(s) 220
BstNI CCWGG 1 cut(s) 672
BstSCI CCNGG 2 cut(s) 239, 670
BstSLI GKGCMC 1 cut(s) 516
BstUI CGCG 4 cut(s) 207, 382, 392, 639
BstV1I GCAGC 4 cut(s) 51, 204, 372, 654
BstV2I GAAGAC 3 cut(s) 608, 615, 845
BstX2I RGATCY 1 cut(s) 1070
BstXI CCANNNNNNTGG 1 cut(s) 509
BstYI RGATCY 1 cut(s) 1070
Bsu36I CCTNAGG 1 cut(s) 145
BsuI GTATCC 2 cut(s) 718, 1053
BsuRI GGCC 2 cut(s) 501, 1029
BtgI CCRYGG 3 cut(s) 205, 502, 872
BtrI CACGTC 1 cut(s) 328
BtsCI GGATG 2 cut(s) 691, 882
BtsIMutI CAGTG 3 cut(s) 16, 514, 904
Cac8I GCNNGC 2 cut(s) 97, 390
CfoI GCGC 2 cut(s) 325, 382
Cfr10I RCCGGY 1 cut(s) 225
Cfr42I CCGCGG 1 cut(s) 208
CseI GACGC 2 cut(s) 184, 245
Csp6I GTAC 2 cut(s) 762, 972
CspCI CAANNNNNGTGG 2 cut(s) 412, 447
CviAII CATG 3 cut(s) 503, 769, 873
CviQI GTAC 2 cut(s) 762, 972
DdeI CTNAG 2 cut(s) 145, 921
DpnI GATC 6 cut(s) 111, 162, 494, 527, 941, 1072
DpnII GATC 6 cut(s) 109, 160, 492, 525, 939, 1070
EaeI YGGCCR 1 cut(s) 499
Ecl136II GAGCTC 2 cut(s) 153, 812
Eco130I CCWWGG 2 cut(s) 502, 872
Eco24I GRGCYC 2 cut(s) 155, 814
Eco31I GGTCTC 1 cut(s) 181
Eco53kI GAGCTC 2 cut(s) 153, 812
Eco57I CTGAAG 1 cut(s) 790
Eco81I CCTNAGG 1 cut(s) 145
Eco88I CYCGRG 1 cut(s) 843
EcoICRI GAGCTC 2 cut(s) 153, 812
EcoRII CCWGG 1 cut(s) 670
EcoT14I CCWWGG 2 cut(s) 502, 872
EcoT38I GRGCYC 2 cut(s) 155, 814
ErhI CCWWGG 2 cut(s) 502, 872
Esp3I CGTCTC 1 cut(s) 131
FaeI CATG 3 cut(s) 506, 772, 876
FalI AAGNNNNNCTT 2 cut(s) 600, 632
FaqI GGGAC 1 cut(s) 278
FatI CATG 3 cut(s) 502, 768, 872
FbaI TGATCA 1 cut(s) 939
FokI GGATG 2 cut(s) 678, 889
FriOI GRGCYC 2 cut(s) 155, 814
FspBI CTAG 1 cut(s) 927
GlaI GCGC 2 cut(s) 324, 381
HaeIII GGCC 2 cut(s) 501, 1029
HapII CCGG 4 cut(s) 226, 240, 656, 788
HgaI GACGC 2 cut(s) 184, 245
HhaI GCGC 2 cut(s) 325, 382
Hin1I GRCGYC 2 cut(s) 140, 237
Hin1II CATG 3 cut(s) 506, 772, 876
Hin6I GCGC 2 cut(s) 323, 380
HinP1I GCGC 2 cut(s) 323, 380
HinfI GANTC 6 cut(s) 122, 167, 270, 569, 713, 841
HpaII CCGG 4 cut(s) 226, 240, 656, 788
HphI GGTGA 4 cut(s) 121, 322, 564, 861
Hpy166II GTNNAC 4 cut(s) 54, 274, 403, 1084
Hpy188I TCNGA 7 cut(s) 109, 121, 157, 181, 468, 682, 809
Hpy188III TCNNGA 5 cut(s) 164, 199, 563, 835, 845
Hpy8I GTNNAC 4 cut(s) 54, 274, 403, 1084
Hpy99I CGWCG 2 cut(s) 161, 218
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 6 cut(s) 11, 221, 334, 518, 614, 687
HpyCH4IV ACGT 3 cut(s) 22, 140, 327
HpyCH4V TGCA 2 cut(s) 388, 995
HpyF3I CTNAG 2 cut(s) 145, 921
HpySE526I ACGT 3 cut(s) 22, 140, 327
Hsp92I GRCGYC 2 cut(s) 140, 237
Hsp92II CATG 3 cut(s) 506, 772, 876
HspAI GCGC 2 cut(s) 323, 380
Ksp22I TGATCA 1 cut(s) 939
KspI CCGCGG 1 cut(s) 208
Kzo9I GATC 6 cut(s) 109, 160, 492, 525, 939, 1070
LmnI GCTCC 7 cut(s) 150, 158, 320, 565, 742, 817, 983
Lsp1109I GCAGC 4 cut(s) 51, 204, 372, 654
LweI GCATC 2 cut(s) 631, 867
MaeI CTAG 1 cut(s) 927
MaeII ACGT 3 cut(s) 22, 140, 327
MaeIII GTNAC 4 cut(s) 127, 196, 328, 334
MalI GATC 6 cut(s) 111, 162, 494, 527, 941, 1072
MboI GATC 6 cut(s) 109, 160, 492, 525, 939, 1070
MboII GAAGA 6 cut(s) 502, 608, 614, 620, 850, 1080
MflI RGATCY 1 cut(s) 1070
MhlI GDGCHC 3 cut(s) 155, 516, 814
MlsI TGGCCA 1 cut(s) 501
MluCI AATT 3 cut(s) 676, 852, 882
MluI ACGCGT 1 cut(s) 390
MluNI TGGCCA 1 cut(s) 501
MlyI GAGTC 2 cut(s) 279, 835
MmeI TCCRAC 3 cut(s) 180, 213, 911
MnlI CCTC 8 cut(s) 43, 70, 154, 290, 412, 539, 930, 998
Mox20I TGGCCA 1 cut(s) 501
MroXI GAANNNNTTC 1 cut(s) 830
MscI TGGCCA 1 cut(s) 501
MseI TTAA 1 cut(s) 345
Msp20I TGGCCA 1 cut(s) 501
MspA1I CMGCKG 1 cut(s) 207
MspI CCGG 4 cut(s) 226, 240, 656, 788
MspR9I CCNGG 2 cut(s) 241, 672
MvaI CCWGG 1 cut(s) 672
MvnI CGCG 4 cut(s) 207, 382, 392, 639
NciI CCSGG 1 cut(s) 241
NcoI CCATGG 2 cut(s) 502, 872
NdeII GATC 6 cut(s) 109, 160, 492, 525, 939, 1070
NlaIII CATG 3 cut(s) 506, 772, 876
NlaIV GGNNCC 1 cut(s) 849
NmeAIII GCCGAG 1 cut(s) 505
NmuCI GTSAC 3 cut(s) 127, 196, 328
NspV TTCGAA 3 cut(s) 473, 488, 908
PdmI GAANNNNTTC 1 cut(s) 830
PfeI GAWTC 4 cut(s) 122, 167, 569, 713
PflFI GACNNNGTC 1 cut(s) 269
PleI GAGTC 2 cut(s) 278, 835
PpsI GAGTC 2 cut(s) 278, 835
PshBI ATTAAT 1 cut(s) 345
Psp124BI GAGCTC 2 cut(s) 155, 814
Psp6I CCWGG 1 cut(s) 670
PspGI CCWGG 1 cut(s) 670
PspN4I GGNNCC 1 cut(s) 849
PsuI RGATCY 1 cut(s) 1070
PsyI GACNNNGTC 1 cut(s) 269
RsaI GTAC 2 cut(s) 763, 973
RsaNI GTAC 2 cut(s) 762, 972
SacI GAGCTC 2 cut(s) 155, 814
SacII CCGCGG 1 cut(s) 208
SaqAI TTAA 1 cut(s) 345
Sau3AI GATC 6 cut(s) 109, 160, 492, 525, 939, 1070
ScaI AGTACT 1 cut(s) 763
SchI GAGTC 2 cut(s) 279, 835
ScrFI CCNGG 2 cut(s) 241, 672
SduI GDGCHC 3 cut(s) 155, 516, 814
SfaNI GCATC 2 cut(s) 631, 867
Sfr303I CCGCGG 1 cut(s) 208
SfuI TTCGAA 3 cut(s) 473, 488, 908
SgrBI CCGCGG 1 cut(s) 208
SmlI CTYRAG 2 cut(s) 595, 1074
SmoI CTYRAG 2 cut(s) 595, 1074
Sse9I AATT 3 cut(s) 676, 852, 882
SspMI CTAG 1 cut(s) 927
SstI GAGCTC 2 cut(s) 155, 814
StyD4I CCNGG 2 cut(s) 239, 670
StyI CCWWGG 2 cut(s) 502, 872
TaaI ACNGT 6 cut(s) 11, 221, 334, 518, 614, 687
TaiI ACGT 3 cut(s) 25, 143, 330
TaqI TCGA 3 cut(s) 473, 488, 908
TaqII GACCGA 1 cut(s) 163
TasI AATT 3 cut(s) 676, 852, 882
TatI WGTACW 2 cut(s) 761, 971
TfiI GAWTC 4 cut(s) 122, 167, 569, 713
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 3 cut(s) 16, 521, 904
TseFI GTSAC 3 cut(s) 127, 196, 328
TseI GCWGC 4 cut(s) 64, 192, 385, 667
Tsp45I GTSAC 3 cut(s) 127, 196, 328
TspDTI ATGAA 2 cut(s) 621, 785
TspGWI ACGGA 2 cut(s) 15, 115
TspRI CASTG 3 cut(s) 16, 521, 904
Tth111I GACNNNGTC 1 cut(s) 269
VspI ATTAAT 1 cut(s) 345
XcmI CCANNNNNNNNNTGG 1 cut(s) 870
XmnI GAANNNNTTC 1 cut(s) 830
XspI CTAG 1 cut(s) 927
ZraI GACGTC 1 cut(s) 141
ZrmI AGTACT 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.