Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007192

Physical Location & Seq

Genomic Coordinates Forward (+)

10224968 .. 10229597

Gene Structure 4630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG137200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAATACAGCGGTGTTCAACGTCCGTTATCCTCCGATGGGTTCACAGCCTCGCTGCCGCTGCCGCCGCCTAACGATTGCGAACTCTCCGGTCAGGTTTCCGATTCCGTCACCACAGAGACGTCCTCAGGGAGCTCCGACGATCAAGAATCATCGGTCTCCGATTGCGAAAGCAGCGTCACAAGCCGCGGCGACGACTACCGTCGCCGGGTGTTGGACGCCGGGTTAGTGAAACTTGGAGAAGGGGACAGAGTCCACGACCTCATCAAGCAAAGGTTTCTTGCGAGTTTGGGATTGCTTGGAGCGCACGTCACCGTTACGGCGATTAATAGAAACTCCCATTCGGGTTTTACGGGTCAAGCCCGGCTGCACGCGTTTCGGGTTTACTTGAAAGCTGTGGAGGACAAATGTGGTGGAAACGCCAATGTGAAATATGGTTGGTATTCTCCGAGTTCGAAAGCCGAGATTTCGAAGATCATTGGCCATGGATTTGGTCATTGTGAAAAGATCAATGGGGTTTATGGTAGAGGTGTCTATCTTGCTCCTGATGATTCACCTTTGGAATGTTTGGAAAACTTGAGTGAAGATGAAGACGGTCTTCGGCATCTTTTGCTTTGCCGTGTGATTTTGGGGAAGCCGGAAGTTGTGCTGCCTGGTAATTCTGAACAGTATCATCCCAGTTCGCAAGAGTTTGATTCGGGTGTGGACAGACTTTTCGCTCCCAAGAAGTATGTAGTGTGGAGTACTCACATGAACACTCATATCTTGCCGGAGTATGTCATCAGCTTCAGAGCTCCTACTTGCCTGAAAGGTATGCAAAACATTCACATTTGGAGATTTGTTTTGGGTCTGTTGAGTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0072593

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PARP RST

Protein Analysis

287

Amino Acids

31.44

Weight (kDa)

5.87

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47720 AT5G62520 AT5G62520
fragaria_vesca	FvH4_5g05320
malus_domestica	MD06G1173800.v1.1 MD14G1180300.v1.1
prunus_persica	Prupe.5G173700_v2.0.a1 Prupe.5G173700_v2.0.a1
pyrus_communis	pycom06g15500 pycom14g15030
rosa_chinensis	RchiOBHm_Chr7g0193541
rosa_laevigata	RLG00000004264
rosa_multiflora	Rmu_co8208784.1_g000001 Rmu_sc0000282.1_g000002 Rmu_sc0006688.1_g000001 Rmu_sc0029611.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262020
rosa_rugosa	Rorug07G0010000 Rorug07G0010000 Rorug07G0010100
rosa_samantha	Rh7AG136900 Rh7BG137200 Rh7CG140500 Rh7DG138300
rosa_wichuraiana	Rw7G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	125
AccII	CGCG	2 cut(s)	189, 374
AciI	CCGC	6 cut(s)	12, 59, 65, 68, 187, 189
AcoI	YGGCCR	1 cut(s)	481
AcuI	CTGAAG	1 cut(s)	772
AcyI	GRCGYC	2 cut(s)	122, 219
AfaI	GTAC	1 cut(s)	745
AfiI	CCNNNNNNNGG	3 cut(s)	39, 208, 214
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	20, 391
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	652
AluBI	AGCT	4 cut(s)	135, 395, 786, 794
AluI	AGCT	4 cut(s)	135, 395, 786, 794
Alw21I	GWGCWC	2 cut(s)	137, 796
Alw26I	GTCTC	2 cut(s)	113, 163
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	5 cut(s)	55, 61, 174, 367, 649
ArsI	GACNNNNNNTTYG	4 cut(s)	162, 194, 698, 730
AseI	ATTAAT	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	307
AsuC2I	CCSGG	3 cut(s)	209, 223, 364
AsuHPI	GGTGA	3 cut(s)	103, 304, 546
AsuII	TTCGAA	2 cut(s)	455, 470
AxyI	CCTNAGG	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	483
BanII	GRGCYC	2 cut(s)	137, 796
BbsI	GAAGAC	2 cut(s)	590, 597
Bbv12I	GWGCWC	2 cut(s)	137, 796
BbvI	GCAGC	5 cut(s)	42, 48, 186, 354, 636
BccI	CCATC	1 cut(s)	32
BceAI	ACGGC	2 cut(s)	336, 603
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BciT130I	CCWGG	1 cut(s)	654
BcnI	CCSGG	3 cut(s)	209, 223, 364
BcoDI	GTCTC	2 cut(s)	113, 163
BmcAI	AGTACT	1 cut(s)	745
Bme1390I	CCNGG	4 cut(s)	209, 223, 364, 654
BmgBI	CACGTC	1 cut(s)	310
BmrFI	CCNGG	4 cut(s)	209, 223, 364, 654
BmrI	ACTGGG	1 cut(s)	672
BmsI	GCATC	1 cut(s)	613
BmuI	ACTGGG	1 cut(s)	672
BoxI	GACNNNNGTC	1 cut(s)	201
BpiI	GAAGAC	2 cut(s)	590, 597
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
Bpu14I	TTCGAA	2 cut(s)	455, 470
BpuEI	CTTGAG	1 cut(s)	598
BpuMI	CCSGG	3 cut(s)	209, 223, 364
BsaHI	GRCGYC	2 cut(s)	122, 219
BsaI	GGTCTC	1 cut(s)	163
BsaJI	CCNNGG	2 cut(s)	187, 484
BsaWI	WCCGGW	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 208, 214
Bse1I	ACTGG	1 cut(s)	678
Bse21I	CCTNAGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	654
BseDI	CCNNGG	2 cut(s)	187, 484
BseGI	GGATG	1 cut(s)	673
BseLI	CCNNNNNNNGG	3 cut(s)	39, 208, 214
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	678
BseXI	GCAGC	5 cut(s)	42, 48, 186, 354, 636
BsgI	GTGCAG	1 cut(s)	353
Bsh1236I	CGCG	2 cut(s)	189, 374
BshFI	GGCC	1 cut(s)	483
BsiHKAI	GWGCWC	2 cut(s)	137, 796
BsiSI	CCGG	6 cut(s)	90, 208, 222, 364, 638, 770
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	3 cut(s)	39, 208, 214
BsmAI	GTCTC	2 cut(s)	113, 163
BsmBI	CGTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	1 cut(s)	483
Bso31I	GGTCTC	1 cut(s)	163
Bsp119I	TTCGAA	2 cut(s)	455, 470
Bsp1286I	GDGCHC	2 cut(s)	137, 796
Bsp143I	GATC	3 cut(s)	142, 474, 507
Bsp19I	CCATGG	1 cut(s)	484
BspACI	CCGC	6 cut(s)	12, 59, 65, 68, 187, 189
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	1 cut(s)	140
BspFNI	CGCG	2 cut(s)	189, 374
BspT104I	TTCGAA	2 cut(s)	455, 470
BspTNI	GGTCTC	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	678
BssECI	CCNNGG	2 cut(s)	187, 484
BssMI	GATC	3 cut(s)	142, 474, 507
BssNI	GRCGYC	2 cut(s)	122, 219
BssT1I	CCWWGG	1 cut(s)	484
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	4 cut(s)	203, 316, 596, 669
BstACI	GRCGYC	2 cut(s)	122, 219
BstAPI	GCANNNNNTGC	1 cut(s)	610
BstBI	TTCGAA	2 cut(s)	455, 470
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	1 cut(s)	127
BstDSI	CCRYGG	2 cut(s)	187, 484
BstF5I	GGATG	1 cut(s)	673
BstFNI	CGCG	2 cut(s)	189, 374
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	3 cut(s)	145, 477, 510
BstMAI	GTCTC	2 cut(s)	113, 163
BstMBI	GATC	3 cut(s)	142, 474, 507
BstMWI	GCNNNNNNNGC	7 cut(s)	61, 64, 67, 174, 183, 304, 610
BstNI	CCWGG	1 cut(s)	654
BstPAI	GACNNNNGTC	1 cut(s)	201
BstSCI	CCNGG	4 cut(s)	207, 221, 362, 652
BstUI	CGCG	2 cut(s)	189, 374
BstV1I	GCAGC	5 cut(s)	42, 48, 186, 354, 636
BstV2I	GAAGAC	2 cut(s)	590, 597
BstXI	CCANNNNNNTGG	1 cut(s)	491
Bsu36I	CCTNAGG	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	483
BtgI	CCRYGG	2 cut(s)	187, 484
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	673
Cac8I	GCNNGC	1 cut(s)	372
CfoI	GCGC	1 cut(s)	307
Cfr42I	CCGCGG	1 cut(s)	190
CseI	GACGC	2 cut(s)	166, 227
Csp6I	GTAC	1 cut(s)	744
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	2 cut(s)	485, 751
CviQI	GTAC	1 cut(s)	744
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	3 cut(s)	144, 476, 509
DpnII	GATC	3 cut(s)	142, 474, 507
EaeI	YGGCCR	1 cut(s)	481
Ecl136II	GAGCTC	2 cut(s)	135, 794
Eco130I	CCWWGG	1 cut(s)	484
Eco24I	GRGCYC	2 cut(s)	137, 796
Eco31I	GGTCTC	1 cut(s)	163
Eco53kI	GAGCTC	2 cut(s)	135, 794
Eco57I	CTGAAG	1 cut(s)	772
Eco81I	CCTNAGG	1 cut(s)	127
EcoICRI	GAGCTC	2 cut(s)	135, 794
EcoRII	CCWGG	1 cut(s)	652
EcoT14I	CCWWGG	1 cut(s)	484
EcoT38I	GRGCYC	2 cut(s)	137, 796
ErhI	CCWWGG	1 cut(s)	484
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	2 cut(s)	488, 754
FaiI	YATR	8 cut(s)	435, 486, 522, 732, 752, 762, 777, 815
FalI	AAGNNNNNCTT	2 cut(s)	582, 614
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	2 cut(s)	484, 750
FokI	GGATG	1 cut(s)	660
FriOI	GRGCYC	2 cut(s)	137, 796
GlaI	GCGC	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	483
HapII	CCGG	6 cut(s)	90, 208, 222, 364, 638, 770
HgaI	GACGC	2 cut(s)	166, 227
HhaI	GCGC	1 cut(s)	307
Hin1I	GRCGYC	2 cut(s)	122, 219
Hin1II	CATG	2 cut(s)	488, 754
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HinfI	GANTC	5 cut(s)	104, 149, 252, 551, 695
HpaII	CCGG	6 cut(s)	90, 208, 222, 364, 638, 770
HphI	GGTGA	3 cut(s)	103, 304, 546
Hpy166II	GTNNAC	4 cut(s)	45, 256, 385, 706
Hpy188I	TCNGA	7 cut(s)	37, 103, 139, 163, 450, 664, 791
Hpy188III	TCNNGA	2 cut(s)	146, 545
Hpy8I	GTNNAC	4 cut(s)	45, 256, 385, 706
Hpy99I	CGWCG	3 cut(s)	143, 197, 207
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	4 cut(s)	203, 316, 596, 669
HpyCH4IV	ACGT	3 cut(s)	22, 122, 309
HpyCH4V	TGCA	2 cut(s)	370, 817
HpyF10VI	GCNNNNNNNGC	7 cut(s)	61, 64, 67, 174, 183, 304, 610
HpyF3I	CTNAG	1 cut(s)	127
HpySE526I	ACGT	3 cut(s)	22, 122, 309
Hsp92I	GRCGYC	2 cut(s)	122, 219
Hsp92II	CATG	2 cut(s)	488, 754
HspAI	GCGC	1 cut(s)	305
KspI	CCGCGG	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	142, 474, 507
LmnI	GCTCC	6 cut(s)	132, 140, 302, 547, 724, 799
Lsp1109I	GCAGC	5 cut(s)	42, 48, 186, 354, 636
LweI	GCATC	1 cut(s)	613
MaeII	ACGT	3 cut(s)	22, 122, 309
MaeIII	GTNAC	4 cut(s)	109, 178, 310, 316
MalI	GATC	3 cut(s)	144, 476, 509
MboI	GATC	3 cut(s)	142, 474, 507
MboII	GAAGA	4 cut(s)	484, 590, 596, 602
MhlI	GDGCHC	2 cut(s)	137, 796
MlsI	TGGCCA	1 cut(s)	483
MluCI	AATT	1 cut(s)	658
MluI	ACGCGT	1 cut(s)	372
MluNI	TGGCCA	1 cut(s)	483
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	2 cut(s)	162, 195
MnlI	CCTC	6 cut(s)	43, 61, 136, 272, 394, 521
Mox20I	TGGCCA	1 cut(s)	483
MscI	TGGCCA	1 cut(s)	483
MseI	TTAA	1 cut(s)	327
Msp20I	TGGCCA	1 cut(s)	483
MspA1I	CMGCKG	3 cut(s)	12, 61, 189
MspI	CCGG	6 cut(s)	90, 208, 222, 364, 638, 770
MspR9I	CCNGG	4 cut(s)	209, 223, 364, 654
MvaI	CCWGG	1 cut(s)	654
MvnI	CGCG	2 cut(s)	189, 374
MwoI	GCNNNNNNNGC	7 cut(s)	61, 64, 67, 174, 183, 304, 610
NciI	CCSGG	3 cut(s)	209, 223, 364
NcoI	CCATGG	1 cut(s)	484
NdeII	GATC	3 cut(s)	142, 474, 507
NlaIII	CATG	2 cut(s)	488, 754
NmeAIII	GCCGAG	1 cut(s)	487
NmuCI	GTSAC	3 cut(s)	109, 178, 310
NspV	TTCGAA	2 cut(s)	455, 470
PfeI	GAWTC	4 cut(s)	104, 149, 551, 695
PflFI	GACNNNGTC	1 cut(s)	251
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PshAI	GACNNNNGTC	1 cut(s)	201
PshBI	ATTAAT	1 cut(s)	327
Psp124BI	GAGCTC	2 cut(s)	137, 796
Psp6I	CCWGG	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	652
PsyI	GACNNNGTC	1 cut(s)	251
RsaI	GTAC	1 cut(s)	745
RsaNI	GTAC	1 cut(s)	744
SacI	GAGCTC	2 cut(s)	137, 796
SacII	CCGCGG	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	327
Sau3AI	GATC	3 cut(s)	142, 474, 507
ScaI	AGTACT	1 cut(s)	745
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	4 cut(s)	209, 223, 364, 654
SduI	GDGCHC	2 cut(s)	137, 796
SfaNI	GCATC	1 cut(s)	613
Sfr303I	CCGCGG	1 cut(s)	190
SfuI	TTCGAA	2 cut(s)	455, 470
SgrBI	CCGCGG	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	577
SmoI	CTYRAG	1 cut(s)	577
Sse9I	AATT	1 cut(s)	658
SsiI	CCGC	6 cut(s)	12, 59, 65, 68, 187, 189
SstI	GAGCTC	2 cut(s)	137, 796
StyD4I	CCNGG	4 cut(s)	207, 221, 362, 652
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	4 cut(s)	203, 316, 596, 669
TaiI	ACGT	3 cut(s)	25, 125, 312
TaqI	TCGA	2 cut(s)	455, 470
TaqII	GACCGA	1 cut(s)	145
TasI	AATT	1 cut(s)	658
TatI	WGTACW	1 cut(s)	743
TauI	GCSGC	5 cut(s)	61, 67, 70, 189, 192
TfiI	GAWTC	4 cut(s)	104, 149, 551, 695
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TseFI	GTSAC	3 cut(s)	109, 178, 310
TseI	GCWGC	5 cut(s)	55, 61, 174, 367, 649
Tsp45I	GTSAC	3 cut(s)	109, 178, 310
TspDTI	ATGAA	2 cut(s)	603, 767
TspGWI	ACGGA	2 cut(s)	15, 97
Tth111I	GACNNNGTC	1 cut(s)	251
VspI	ATTAAT	1 cut(s)	327
ZraI	GACGTC	1 cut(s)	123
ZrmI	AGTACT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.