AT3G47840

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
17651841 .. 17654032
2192 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47840.1

Sequence Viewer

Length: 2121 bp
ATGATTTCGAGTGTGAGAAATTGCGGCACAATCCAACGGTTTTGTACAACTTCGATTTCATTGCTCCAGAAACCGGTTGAGGAGAACATTGTCCGTATCTCGAATCAGGTGATGGTCAAATTTGATCCCAACTCTCACCTTAGGAGTCTCATCAATGCAGGGAATTTGCGAGCTGCTCGCCAAGTGTTCGATAAAATGCCCCACGGAGATATTGTTTCATGGACATCCATCATTAAAAGATACGTAACTGCAAACAACTCTGACGAAGCACTGATTTTGTTCTCCGCAATGCGTGTTGTTGATCATGCCGTCTCACCTGATACCTCTGTGCTAAGTGTTGTACTCAAGGCTTGTGGTCAAAGCTCCAATATTGCATATGGAGAATCTTTGCATGCTTATGCGGTGAAAACTTCGCTTCTCAGCTCTGTATATGTGGGAAGTTCTTTACTGGATATGTATAAGAGAGTTGGAAAGATTGATAAGAGTTGCAGAGTCTTTAGCGAAATGCCTTTTAGAAATGCTGTAACATGGACAGCGATTATTACGGGGTTGGTTCACGCTGGTCGTTACAAGGAAGGTCTTACGTACTTTTCTGAAATGTCGAGATCGGAAGAACTATCTGATACTTATACATTTGCTATTGCCTTGAAGGCTTGTGCTGGTTTACGTCAAGTTAAATATGGTAAGGCGATTCATACTCATGTGATAGTGAGAGGCTTTGTTACCACTCTTTGCGTGGCTAACTCACTCGCGACAATGTACACTGAATGTGGGGAAATGCAGGACGGACTTTGTTTGTTTGAAAATATGAGTGAGAGGGATGTGGTTTCGTGGACAAGCCTTATTGTGGCTTACAAGCGAATCGGTCAAGAAGTAAAAGCTGTGGAGACATTTATAAAGATGAGAAATTCTCAAGTCCCTCCTAATGAACAAACTTTTGCATCAATGTTTTCTGCGTGTGCGAGTCTTTCTAGACTTGTGTGGGGCGAGCAGCTCCACTGTAATGTTTTGTCTCTAGGTTTAAATGATTCTTTGTCAGTGAGTAACTCGATGATGAAGATGTATTCTACATGTGGGAATTTAGTCTCTGCTTCTGTTTTGTTTCAAGGAATGAGATGCAGGGACATTATTTCGTGGAGTACCATTATTGGAGGGTACTGTCAAGCCGGTTTTGGAGAAGAAGGTTTTAAGTATTTCTCATGGATGAGACAATCAGGGACAAAACCAACAGATTTTGCTCTTGCTAGTTTGCTGAGTGTTTCAGGAAACATGGCAGTTATTGAGGGAGGCAGGCAAGTTCACGCGCTTGCTCTTTGTTTTGGTTTAGAACAGAACTCCACGGTTCGTAGTAGTCTGATTAATATGTACTCGAAATGTGGAAGTATCAAAGAAGCTTCAATGATATTCGGAGAAACAGATAGAGATGATATTGTTTCTCTGACAGCTATGATCAATGGATATGCAGAACATGGAAAGAGCAAAGAAGCTATTGATCTGTTTGAGAAGAGTCTAAAGGTTGGTTTCAGACCCGACTCTGTAACTTTCATCAGCGTTCTCACCGCCTGCACTCATTCGGGACAGCTTGACCTTGGTTTTCACTATTTCAACATGATGCAAGAGACGTATAATATGAGACCAGCCAAGGAACATTATGGTTGTATGGTTGATCTGTTATGTAGAGCAGGACGGCTAAGTGATGCAGAGAAGATGATCAATGAGATGTCATGGAAGAAAGACGATGTAGTCTGGACCACACTTCTCATTGCGTGTAAGGCCAAAGGAGACATTGAACGTGGGAGAAGGGCTGCTGAGAGGATTCTAGAGCTGGATCCTACTTGTGCAACTGCACTTGTAACACTAGCCAATATATATTCAAGCACAGGGAACTTGGAAGAAGCTGCAAATGTAAGAAAGAATATGAAAGCAAAAGGCGTGATCAAAGAGCCCGGATGGTCATCAATTAAGATCAAGGATTGCGTTTCAGCGTTTGTATCTGGTGATCGGTTCCATCCGCAAAGTGAAGATATATACAATATCTTGGAATTAGCAGTATCTGGTGCAGAAGCTCATAGATTTGATTGCACATTAAAGAGAGCTTTTGGGGTTAATTTATATTCCTGA

Protein Analysis

706

Amino Acids

78.05

Weight (kDa)

8.33

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 173 - 220 3.8e-08 PPR repeat family
PPR_2 PF13041 273 - 321 2.4e-09 PPR repeat family
PPR_2 PF13041 374 - 418 2.5e-07 PPR repeat family
PPR_2 PF13041 476 - 523 1.9e-09 PPR repeat family
PPR_1 PF12854 550 - 575 8e-06 PPR repeat
E_motif PF20431 595 - 654 9.8e-14 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 896
AasI GACNNNNNNGTC 1 cut(s) 1742
AccII CGCG 2 cut(s) 752, 1304
AciI CCGC 5 cut(s) 24, 285, 401, 1560, 2012
AclWI GGATC 3 cut(s) 119, 1823, 1836
AcsI RAATTY 4 cut(s) 119, 163, 907, 1078
AfaI GTAC 7 cut(s) 46, 342, 587, 761, 1141, 1157, 1367
AfiI CCNNNNNNNGG 2 cut(s) 73, 847
AflIII ACRYGT 1 cut(s) 1070
AgeI ACCGGT 1 cut(s) 73
AgsI TTSAA 7 cut(s) 649, 803, 1106, 1398, 1606, 1790, 1875
Alw26I GTCTC 9 cut(s) 152, 316, 881, 1017, 1090, 1201, 1613, 1627, 1776
AlwI GGATC 3 cut(s) 119, 1823, 1836
AlwNI CAGNNNCTG 1 cut(s) 2054
AoxI GGCC 1 cut(s) 1773
ApeKI GCWGC 4 cut(s) 173, 991, 1805, 1898
ApoI RAATTY 4 cut(s) 119, 163, 907, 1078
AseI ATTAAT 1 cut(s) 1359
AsiGI ACCGGT 1 cut(s) 73
AspLEI GCGC 1 cut(s) 1306
AspS9I GGNCC 1 cut(s) 1749
AsuC2I CCSGG 1 cut(s) 1947
AsuHPI GGTGA 6 cut(s) 121, 128, 306, 415, 1549, 2009
AvaII GGWCC 1 cut(s) 1749
AxyI CCTNAGG 1 cut(s) 140
BaeI ACNNNNGTAYC 2 cut(s) 312, 345
BamHI GGATCC 1 cut(s) 1828
BanII GRGCYC 1 cut(s) 1947
BbvI GCAGC 4 cut(s) 160, 1003, 1792, 1885
BccI CCATC 4 cut(s) 106, 236, 1944, 2016
BceAI ACGGC 2 cut(s) 293, 1703
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BclI TGATCA 4 cut(s) 301, 1449, 1710, 1935
BcnI CCSGG 1 cut(s) 1947
BcoDI GTCTC 9 cut(s) 152, 316, 881, 1017, 1090, 1201, 1613, 1627, 1776
BfaI CTAG 5 cut(s) 972, 1016, 1245, 1820, 1859
BglI GCCNNNNNGGC 1 cut(s) 650
BisI GCNGC 5 cut(s) 25, 174, 992, 1806, 1899
BlsI GCNGC 5 cut(s) 26, 175, 993, 1807, 1900
Bme1390I CCNGG 1 cut(s) 1947
Bme18I GGWCC 1 cut(s) 1749
BmgT120I GGNCC 1 cut(s) 1749
BmiI GGNNCC 2 cut(s) 1830, 2006
BmrFI CCNGG 1 cut(s) 1947
BmsI GCATC 4 cut(s) 950, 1106, 1602, 1687
BplI GAGNNNNNCTC 2 cut(s) 895, 927
BpmI CTGGAG 1 cut(s) 50
BpuEI CTTGAG 2 cut(s) 329, 897
BpuMI CCSGG 1 cut(s) 1947
BsaAI YACGTR 2 cut(s) 244, 585
BsaBI GATNNNNATC 1 cut(s) 1954
BsaI GGTCTC 1 cut(s) 1627
BsaJI CCNNGG 4 cut(s) 202, 1338, 1588, 1641
BsaWI WCCGGW 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 847
Bse118I RCCGGY 2 cut(s) 73, 1166
Bse1I ACTGG 1 cut(s) 453
Bse21I CCTNAGG 1 cut(s) 140
Bse3DI GCAATG 3 cut(s) 59, 294, 1761
Bse8I GATNNNNATC 1 cut(s) 1954
BseDI CCNNGG 4 cut(s) 202, 1338, 1588, 1641
BseGI GGATG 5 cut(s) 224, 826, 1209, 1955, 2008
BseJI GATNNNNATC 1 cut(s) 1954
BseLI CCNNNNNNNGG 2 cut(s) 73, 847
BseMI GCAATG 3 cut(s) 59, 294, 1761
BseMII CTCAG 3 cut(s) 433, 1244, 1800
BseNI ACTGG 1 cut(s) 453
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 4 cut(s) 160, 1003, 1792, 1885
BsgI GTGCAG 3 cut(s) 1549, 1830, 2079
Bsh1236I CGCG 2 cut(s) 752, 1304
BshFI GGCC 1 cut(s) 1775
BshTI ACCGGT 1 cut(s) 73
BsiSI CCGG 3 cut(s) 74, 1167, 1947
BslFI GGGAC 4 cut(s) 902, 1136, 1231, 1590
BslI CCNNNNNNNGG 2 cut(s) 73, 847
BsmAI GTCTC 9 cut(s) 152, 316, 881, 1017, 1090, 1201, 1613, 1627, 1776
BsmBI CGTCTC 2 cut(s) 316, 1613
BsmFI GGGAC 4 cut(s) 902, 1136, 1231, 1590
BsnI GGCC 1 cut(s) 1775
Bso31I GGTCTC 1 cut(s) 1627
Bsp1286I GDGCHC 1 cut(s) 1947
Bsp1407I TGTACA 2 cut(s) 44, 759
Bsp68I TCGCGA 1 cut(s) 752
BspACI CCGC 5 cut(s) 24, 285, 401, 1560, 2012
BspANI GGCC 1 cut(s) 1775
BspCNI CTCAG 3 cut(s) 432, 1245, 1801
BspFNI CGCG 2 cut(s) 752, 1304
BspLI GGNNCC 2 cut(s) 1830, 2006
BspPI GGATC 3 cut(s) 119, 1823, 1836
BspTNI GGTCTC 1 cut(s) 1627
BsrDI GCAATG 3 cut(s) 59, 294, 1761
BsrFI RCCGGY 2 cut(s) 73, 1166
BsrGI TGTACA 2 cut(s) 44, 759
BsrI ACTGG 1 cut(s) 453
BssAI RCCGGY 2 cut(s) 73, 1166
BssECI CCNNGG 4 cut(s) 202, 1338, 1588, 1641
BssT1I CCWWGG 2 cut(s) 1588, 1641
Bst4CI ACNGT 4 cut(s) 39, 1001, 1160, 1342
Bst6I CTCTTC 1 cut(s) 1499
BstAUI TGTACA 2 cut(s) 44, 759
BstBAI YACGTR 2 cut(s) 244, 585
BstC8I GCNNGC 7 cut(s) 171, 178, 393, 989, 1292, 1308, 1564
BstDEI CTNAG 6 cut(s) 140, 332, 419, 1253, 1691, 1809
BstDSI CCRYGG 2 cut(s) 202, 1338
BstF5I GGATG 5 cut(s) 224, 826, 1209, 1955, 2008
BstFNI CGCG 2 cut(s) 752, 1304
BstHHI GCGC 1 cut(s) 1306
BstMAI GTCTC 9 cut(s) 152, 316, 881, 1017, 1090, 1201, 1613, 1627, 1776
BstMWI GCNNNNNNNGC 2 cut(s) 650, 1772
BstNSI RCATGY 2 cut(s) 395, 1074
BstSCI CCNGG 1 cut(s) 1945
BstSNI TACGTA 2 cut(s) 244, 585
BstUI CGCG 2 cut(s) 752, 1304
BstV1I GCAGC 4 cut(s) 160, 1003, 1792, 1885
BstX2I RGATCY 1 cut(s) 1828
BstYI RGATCY 1 cut(s) 1828
Bsu36I CCTNAGG 1 cut(s) 140
BsuRI GGCC 1 cut(s) 1775
BtgI CCRYGG 2 cut(s) 202, 1338
BtsCI GGATG 5 cut(s) 224, 826, 1209, 1955, 2008
BtsIMutI CAGTG 4 cut(s) 269, 762, 997, 1044
BtuMI TCGCGA 1 cut(s) 752
Cac8I GCNNGC 7 cut(s) 171, 178, 393, 989, 1292, 1308, 1564
CaiI CAGNNNCTG 1 cut(s) 2054
CfoI GCGC 1 cut(s) 1306
Cfr10I RCCGGY 2 cut(s) 73, 1166
Cfr13I GGNCC 1 cut(s) 1749
Csp6I GTAC 7 cut(s) 45, 341, 586, 760, 1140, 1156, 1366
CspAI ACCGGT 1 cut(s) 73
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviQI GTAC 7 cut(s) 45, 341, 586, 760, 1140, 1156, 1366
DdeI CTNAG 6 cut(s) 140, 332, 419, 1253, 1691, 1809
DraI TTTAAA 1 cut(s) 1023
DrdI GACNNNNNNGTC 1 cut(s) 1742
DseDI GACNNNNNNGTC 1 cut(s) 1742
Eam1104I CTCTTC 1 cut(s) 1499
EarI CTCTTC 1 cut(s) 1499
Eco105I TACGTA 2 cut(s) 244, 585
Eco130I CCWWGG 2 cut(s) 1588, 1641
Eco24I GRGCYC 1 cut(s) 1947
Eco31I GGTCTC 1 cut(s) 1627
Eco47I GGWCC 1 cut(s) 1749
Eco81I CCTNAGG 1 cut(s) 140
EcoT14I CCWWGG 2 cut(s) 1588, 1641
EcoT38I GRGCYC 1 cut(s) 1947
ErhI CCWWGG 2 cut(s) 1588, 1641
Esp3I CGTCTC 2 cut(s) 316, 1613
FaqI GGGAC 4 cut(s) 902, 1136, 1231, 1590
FauNDI CATATG 1 cut(s) 376
FbaI TGATCA 4 cut(s) 301, 1449, 1710, 1935
Fnu4HI GCNGC 5 cut(s) 25, 174, 992, 1806, 1899
FokI GGATG 5 cut(s) 211, 833, 1216, 1962, 1995
FriOI GRGCYC 1 cut(s) 1947
Fsp4HI GCNGC 5 cut(s) 25, 174, 992, 1806, 1899
FspBI CTAG 5 cut(s) 972, 1016, 1245, 1820, 1859
GlaI GCGC 1 cut(s) 1305
GluI GCNGC 5 cut(s) 25, 174, 992, 1806, 1899
GsuI CTGGAG 1 cut(s) 50
HaeIII GGCC 1 cut(s) 1775
HapII CCGG 3 cut(s) 74, 1167, 1947
HhaI GCGC 1 cut(s) 1306
Hin6I GCGC 1 cut(s) 1304
HinP1I GCGC 1 cut(s) 1304
HindIII AAGCTT 1 cut(s) 1392
HpaII CCGG 3 cut(s) 74, 1167, 1947
HphI GGTGA 6 cut(s) 121, 128, 306, 415, 1549, 2009
Hpy166II GTNNAC 5 cut(s) 556, 665, 762, 834, 1300
Hpy188I TCNGA 8 cut(s) 262, 595, 610, 622, 1356, 1409, 1440, 1526
Hpy8I GTNNAC 5 cut(s) 556, 665, 762, 834, 1300
HpyAV CCTTC 4 cut(s) 569, 643, 1175, 1794
HpyCH4III ACNGT 4 cut(s) 39, 1001, 1160, 1342
HpyCH4IV ACGT 5 cut(s) 243, 584, 667, 1622, 1792
HpyF10VI GCNNNNNNNGC 2 cut(s) 650, 1772
HpyF3I CTNAG 6 cut(s) 140, 332, 419, 1253, 1691, 1809
HpySE526I ACGT 5 cut(s) 243, 584, 667, 1622, 1792
HspAI GCGC 1 cut(s) 1304
Ksp22I TGATCA 4 cut(s) 301, 1449, 1710, 1935
LmnI GCTCC 3 cut(s) 69, 368, 999
Lsp1109I GCAGC 4 cut(s) 160, 1003, 1792, 1885
LweI GCATC 4 cut(s) 950, 1106, 1602, 1687
MaeI CTAG 5 cut(s) 972, 1016, 1245, 1820, 1859
MaeII ACGT 5 cut(s) 243, 584, 667, 1622, 1792
MaeIII GTNAC 7 cut(s) 244, 523, 566, 721, 1043, 1537, 1852
MboII GAAGA 8 cut(s) 623, 1069, 1190, 1516, 1717, 1741, 1904, 2033
MflI RGATCY 1 cut(s) 1828
MhlI GDGCHC 1 cut(s) 1947
MluCI AATT 8 cut(s) 19, 119, 163, 907, 1078, 1959, 2042, 2107
MlyI GAGTC 5 cut(s) 154, 501, 973, 1516, 1526
MmeI TCCRAC 2 cut(s) 58, 448
MnlI CCTC 9 cut(s) 73, 334, 707, 810, 930, 1145, 1276, 1280, 1806
MseI TTAA 8 cut(s) 234, 675, 1022, 1188, 1359, 1962, 2087, 2106
MslI CAYNNNNRTG 3 cut(s) 396, 699, 1002
MspI CCGG 3 cut(s) 74, 1167, 1947
MspR9I CCNGG 1 cut(s) 1947
MvnI CGCG 2 cut(s) 752, 1304
MwoI GCNNNNNNNGC 2 cut(s) 650, 1772
NciI CCSGG 1 cut(s) 1947
NdeI CATATG 1 cut(s) 376
NlaIV GGNNCC 2 cut(s) 1830, 2006
NruI TCGCGA 1 cut(s) 752
NspI RCATGY 2 cut(s) 395, 1074
PaeI GCATGC 1 cut(s) 395
PciI ACATGT 1 cut(s) 1070
PfeI GAWTC 6 cut(s) 103, 383, 691, 861, 1028, 1816
PinAI ACCGGT 1 cut(s) 73
PkrI GCNGC 5 cut(s) 26, 175, 993, 1807, 1900
PleI GAGTC 5 cut(s) 153, 500, 972, 1515, 1526
PpsI GAGTC 5 cut(s) 153, 500, 972, 1515, 1526
Ppu21I YACGTR 2 cut(s) 244, 585
PscI ACATGT 1 cut(s) 1070
PshBI ATTAAT 1 cut(s) 1359
PsiI TTATAA 1 cut(s) 896
PspN4I GGNNCC 2 cut(s) 1830, 2006
PspPI GGNCC 1 cut(s) 1749
PstNI CAGNNNCTG 1 cut(s) 2054
PsuI RGATCY 1 cut(s) 1828
RruI TCGCGA 1 cut(s) 752
RsaI GTAC 7 cut(s) 46, 342, 587, 761, 1141, 1157, 1367
RsaNI GTAC 7 cut(s) 45, 341, 586, 760, 1140, 1156, 1366
RseI CAYNNNNRTG 3 cut(s) 396, 699, 1002
SaqAI TTAA 8 cut(s) 234, 675, 1022, 1188, 1359, 1962, 2087, 2106
SatI GCNGC 5 cut(s) 25, 174, 992, 1806, 1899
Sau96I GGNCC 1 cut(s) 1749
SchI GAGTC 5 cut(s) 154, 501, 973, 1516, 1526
ScrFI CCNGG 1 cut(s) 1947
SduI GDGCHC 1 cut(s) 1947
SfaNI GCATC 4 cut(s) 950, 1106, 1602, 1687
SinI GGWCC 1 cut(s) 1749
SmiMI CAYNNNNRTG 3 cut(s) 396, 699, 1002
SmlI CTYRAG 2 cut(s) 344, 912
SmoI CTYRAG 2 cut(s) 344, 912
SnaBI TACGTA 2 cut(s) 244, 585
SphI GCATGC 1 cut(s) 395
Sse9I AATT 8 cut(s) 19, 119, 163, 907, 1078, 1959, 2042, 2107
SsiI CCGC 5 cut(s) 24, 285, 401, 1560, 2012
SspI AATATT 1 cut(s) 370
SspMI CTAG 5 cut(s) 972, 1016, 1245, 1820, 1859
StyD4I CCNGG 1 cut(s) 1945
StyI CCWWGG 2 cut(s) 1588, 1641
TaaI ACNGT 4 cut(s) 39, 1001, 1160, 1342
TaiI ACGT 5 cut(s) 246, 587, 670, 1625, 1795
TaqI TCGA 7 cut(s) 8, 53, 101, 189, 602, 1049, 1370
TaqII GACCGA 1 cut(s) 854
TasI AATT 8 cut(s) 19, 119, 163, 907, 1078, 1959, 2042, 2107
TatI WGTACW 4 cut(s) 44, 340, 759, 1365
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 6 cut(s) 103, 383, 691, 861, 1028, 1816
Tru1I TTAA 8 cut(s) 234, 675, 1022, 1188, 1359, 1962, 2087, 2106
Tru9I TTAA 8 cut(s) 234, 675, 1022, 1188, 1359, 1962, 2087, 2106
TscAI CASTG 4 cut(s) 276, 769, 1004, 1044
TseI GCWGC 4 cut(s) 173, 991, 1805, 1898
TspDTI ATGAA 7 cut(s) 48, 207, 683, 942, 1070, 1534, 1934
TspGWI ACGGA 3 cut(s) 83, 219, 801
TspRI CASTG 4 cut(s) 276, 769, 1004, 1044
VpaK11BI GGWCC 1 cut(s) 1749
VspI ATTAAT 1 cut(s) 1359
XapI RAATTY 4 cut(s) 119, 163, 907, 1078
XbaI TCTAGA 2 cut(s) 971, 1819
XceI RCATGY 2 cut(s) 395, 1074
XcmI CCANNNNNNNNNTGG 1 cut(s) 733
XspI CTAG 5 cut(s) 972, 1016, 1245, 1820, 1859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.