Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008424

Physical Location & Seq

Genomic Coordinates Reverse (-)

12964804 .. 12965451

Gene Structure 648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG147900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGATTAATGGATATGCTCAACATGGGTACTACCACGAAGCCATTGATCTGTTTGAGAAGCTTCCTACGGTTGGTCTGAAACCGGACTCAGTGACCTTCATTGGTGTTCTTGCCGCGTGTAGCCATGCTGGACTAGTTGATCTTGGTTTTCACTACTTCAATTCAATGAGCAATGAATTTAAGATTAGTCCTTCAAAAGAACACTACGGCTGCATGATTGATCTCCTTTGTCGAGCTGGACGGTTAAGTGAAGCAGAGCACATGATCAAAAGTATGCCAGTTCAACAGGATGATGTTGTCTGGTCTACTCTACTTACAGCATGTCGTCTCCATGGTGATGTTGACTGCGGAAGACACGCTGCAGAGGAGATTCTTAAATTAAATCCTAATTGTGCAGTGACTCACATAACGCTAGCTGGTATTTATGCTGCCAAAGGAATGTGGAGGGAAGCCGCAGAGGTAAGGAGAATGATGAGATCAAAGGGCGTAATTAAGGAACCCGGATGGTCTGGGATAGAGGTCAAGAATGGGATTTCTGTGTTTGTTGCTGGAGATAGGTCTCATCCACAAGGTGATGAGATATATAGTGTGCTGGAATTACTAGATTCAAAGGCAGAGATTTCTACTCGGGAAACAGTTCTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

215

Amino Acids

23.79

Weight (kDa)

5.98

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	1 - 41	4.1e-07	PPR repeat family
PPR_1	PF12854	62 - 92	8.7e-06	PPR repeat
E_motif	PF20431	111 - 173	5.7e-11	E motif
Eplus_motif	PF20430	181 - 199	1.4e-06	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47840
fragaria_vesca	FvH4_1g12800 FvH4_2g13800
malus_domestica	MD02G1143600.v1.1 MD15G1256800.v1.1
prunus_persica	Prupe.7G158100_v2.0.a1
pyrus_communis	pycom02g11350 pycom11g12090 pycom15g22480
rosa_chinensis	RchiOBHm_Chr2g0100941
rosa_laevigata	RLG00000016992 RLG00000017027
rosa_multiflora	Rmu_sc0001659.1_g000049 Rmu_sc0001862.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141730
rosa_rugosa	Rorug02G0091300 Rorug02G0093800
rosa_samantha	Rh2AG141500 Rh2BG143000 Rh2BG146700 Rh2CG147900 Rh2DG147200
rosa_wichuraiana	Rw2G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	305
AccII	CGCG	1 cut(s)	116
AciI	CCGC	3 cut(s)	114, 348, 453
AcsI	RAATTY	1 cut(s)	176
AdeI	CACNNNGTG	1 cut(s)	572
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgsI	TTSAA	5 cut(s)	160, 165, 195, 284, 609
AhlI	ACTAGT	1 cut(s)	133
AluBI	AGCT	3 cut(s)	61, 236, 416
AluI	AGCT	3 cut(s)	61, 236, 416
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	2 cut(s)	332, 564
Ama87I	CYCGRG	1 cut(s)	627
ApeKI	GCWGC	3 cut(s)	210, 359, 428
ApoI	RAATTY	1 cut(s)	176
AseI	ATTAAT	1 cut(s)	6
Asp700I	GAANNNNTTC	1 cut(s)	636
AsuC2I	CCSGG	1 cut(s)	501
AsuHPI	GGTGA	2 cut(s)	347, 584
AsuNHI	GCTAGC	1 cut(s)	412
AvaI	CYCGRG	1 cut(s)	627
BbsI	GAAGAC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	3 cut(s)	197, 346, 415
BccI	CCATC	1 cut(s)	498
BceAI	ACGGC	1 cut(s)	223
BclI	TGATCA	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	501
BcoDI	GTCTC	2 cut(s)	332, 564
BcuI	ACTAGT	1 cut(s)	133
BfaI	CTAG	3 cut(s)	134, 413, 602
BfmI	CTRYAG	1 cut(s)	360
BisI	GCNGC	5 cut(s)	114, 211, 360, 429, 453
BlsI	GCNGC	5 cut(s)	115, 212, 361, 430, 454
Bme1390I	CCNGG	1 cut(s)	501
BmeT110I	CYCGRG	1 cut(s)	627
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	1 cut(s)	501
BmtI	GCTAGC	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	570
BpuMI	CCSGG	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	564
BsaJI	CCNNGG	1 cut(s)	331
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	278
Bse3DI	GCAATG	1 cut(s)	178
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	3 cut(s)	295, 509, 562
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	3 cut(s)	197, 346, 415
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	627
BsiSI	CCGG	2 cut(s)	83, 501
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	2 cut(s)	332, 564
BsmBI	CGTCTC	1 cut(s)	332
Bso31I	GGTCTC	1 cut(s)	564
BsoBI	CYCGRG	1 cut(s)	627
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	5 cut(s)	46, 139, 220, 264, 476
Bsp19I	CCATGG	1 cut(s)	331
BspACI	CCGC	3 cut(s)	114, 348, 453
BspCNI	CTCAG	1 cut(s)	101
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	498
BspMAI	CTGCAG	1 cut(s)	364
BspOI	GCTAGC	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	564
BsrDI	GCAATG	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	5 cut(s)	46, 139, 220, 264, 476
BssT1I	CCWWGG	1 cut(s)	331
Bst4CI	ACNGT	3 cut(s)	70, 243, 637
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	1 cut(s)	88
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	3 cut(s)	295, 509, 562
BstFNI	CGCG	1 cut(s)	116
BstKTI	GATC	5 cut(s)	49, 142, 223, 267, 479
BstMAI	GTCTC	2 cut(s)	332, 564
BstMBI	GATC	5 cut(s)	46, 139, 220, 264, 476
BstNSI	RCATGY	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	499
BstSFI	CTRYAG	1 cut(s)	360
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	3 cut(s)	197, 346, 415
BstV2I	GAAGAC	1 cut(s)	358
BtgI	CCRYGG	1 cut(s)	331
BtsCI	GGATG	3 cut(s)	295, 509, 562
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	2 cut(s)	96, 402
Cac8I	GCNNGC	1 cut(s)	414
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	6 cut(s)	23, 125, 214, 262, 321, 332
CviJI	RGCY	7 cut(s)	41, 61, 123, 210, 236, 416, 452
CviKI_1	RGCY	7 cut(s)	41, 61, 123, 210, 236, 416, 452
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	1 cut(s)	88
DpnI	GATC	5 cut(s)	48, 141, 222, 266, 478
DpnII	GATC	5 cut(s)	46, 139, 220, 264, 476
DraIII	CACNNNGTG	1 cut(s)	572
Eco130I	CCWWGG	1 cut(s)	331
Eco31I	GGTCTC	1 cut(s)	564
Eco88I	CYCGRG	1 cut(s)	627
EcoT14I	CCWWGG	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	331
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	6 cut(s)	26, 128, 217, 265, 324, 335
FatI	CATG	6 cut(s)	22, 124, 213, 261, 320, 331
FbaI	TGATCA	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	305
Fnu4HI	GCNGC	5 cut(s)	114, 211, 360, 429, 453
FokI	GGATG	3 cut(s)	302, 516, 549
Fsp4HI	GCNGC	5 cut(s)	114, 211, 360, 429, 453
FspBI	CTAG	3 cut(s)	134, 413, 602
GluI	GCNGC	5 cut(s)	114, 211, 360, 429, 453
GsuI	CTGGAG	1 cut(s)	570
HapII	CCGG	2 cut(s)	83, 501
Hin1II	CATG	6 cut(s)	26, 128, 217, 265, 324, 335
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	4 cut(s)	86, 370, 400, 605
HpaII	CCGG	2 cut(s)	83, 501
HphI	GGTGA	2 cut(s)	347, 584
Hpy166II	GTNNAC	2 cut(s)	306, 343
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	2 cut(s)	523, 629
Hpy8I	GTNNAC	2 cut(s)	306, 343
HpyAV	CCTTC	2 cut(s)	106, 201
HpyCH4III	ACNGT	3 cut(s)	70, 243, 637
HpyCH4V	TGCA	3 cut(s)	213, 362, 395
HpyF3I	CTNAG	1 cut(s)	88
Hsp92II	CATG	6 cut(s)	26, 128, 217, 265, 324, 335
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	5 cut(s)	46, 139, 220, 264, 476
Lsp1109I	GCAGC	3 cut(s)	197, 346, 415
MaeI	CTAG	3 cut(s)	134, 413, 602
MaeIII	GTNAC	2 cut(s)	91, 397
MalI	GATC	5 cut(s)	48, 141, 222, 266, 478
MboI	GATC	5 cut(s)	46, 139, 220, 264, 476
MboII	GAAGA	2 cut(s)	363, 632
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	6 cut(s)	160, 176, 377, 388, 489, 596
MlyI	GAGTC	2 cut(s)	80, 394
MnlI	CCTC	4 cut(s)	358, 438, 451, 511
MroXI	GAANNNNTTC	1 cut(s)	636
MseI	TTAA	6 cut(s)	6, 180, 245, 375, 380, 492
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	2 cut(s)	83, 501
MspR9I	CCNGG	1 cut(s)	501
MvnI	CGCG	1 cut(s)	116
NciI	CCSGG	1 cut(s)	501
NcoI	CCATGG	1 cut(s)	331
NdeII	GATC	5 cut(s)	46, 139, 220, 264, 476
NheI	GCTAGC	1 cut(s)	412
NlaIII	CATG	6 cut(s)	26, 128, 217, 265, 324, 335
NlaIV	GGNNCC	1 cut(s)	498
NmuCI	GTSAC	2 cut(s)	91, 397
NspI	RCATGY	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	636
PfeI	GAWTC	2 cut(s)	370, 605
PkrI	GCNGC	5 cut(s)	115, 212, 361, 430, 454
PleI	GAGTC	2 cut(s)	80, 394
PpsI	GAGTC	2 cut(s)	80, 394
PshBI	ATTAAT	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	498
PstI	CTGCAG	1 cut(s)	364
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	6 cut(s)	6, 180, 245, 375, 380, 492
SatI	GCNGC	5 cut(s)	114, 211, 360, 429, 453
Sau3AI	GATC	5 cut(s)	46, 139, 220, 264, 476
SchI	GAGTC	2 cut(s)	80, 394
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	8 cut(s)	63, 98, 238, 418, 462, 522, 560, 574
SfcI	CTRYAG	1 cut(s)	360
SmiMI	CAYNNNNRTG	1 cut(s)	336
SpeI	ACTAGT	1 cut(s)	133
Sse9I	AATT	6 cut(s)	160, 176, 377, 388, 489, 596
SsiI	CCGC	3 cut(s)	114, 348, 453
SspMI	CTAG	3 cut(s)	134, 413, 602
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	3 cut(s)	70, 243, 637
TaqI	TCGA	1 cut(s)	232
TasI	AATT	6 cut(s)	160, 176, 377, 388, 489, 596
TauI	GCSGC	2 cut(s)	116, 455
TfiI	GAWTC	2 cut(s)	370, 605
Tru1I	TTAA	6 cut(s)	6, 180, 245, 375, 380, 492
Tru9I	TTAA	6 cut(s)	6, 180, 245, 375, 380, 492
TscAI	CASTG	2 cut(s)	96, 402
TseFI	GTSAC	2 cut(s)	91, 397
TseI	GCWGC	3 cut(s)	210, 359, 428
Tsp45I	GTSAC	2 cut(s)	91, 397
TspDTI	ATGAA	3 cut(s)	88, 189, 632
TspRI	CASTG	2 cut(s)	96, 402
VspI	ATTAAT	1 cut(s)	6
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	1 cut(s)	324
XmiI	GTMKAC	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	636
XspI	CTAG	3 cut(s)	134, 413, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.