Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008424

Physical Location & Seq

Genomic Coordinates Forward (+)

7288696 .. 7289847

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0091300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCGGTTATGAAGCCTGGAGTGATTTCCTTGTTTGATGTTGATGGGACTCTCACTGCTCCCAAAAAGGATGTTACTCCGCAAATGTTAGGATTCATGCGAGAACTCAAGAAGGTTGTTACAGTGGGCATTGTGGGAGGATCCAACCTTTCTAACAAAGCAGCTTGGAAAGACAGTTTCCCTTGGGCTGCAATAGGAGGTATGGATAACAAGCTTATCATCTGGGATTTGCAACATTCGTTGCCCCGTTCTACATGTGACCATGAGCTCTTCACCAGCTTGTTTGCTTCCATTAAATGTCAATTGTTGGATGTCATACTTCAGATTTTAAATCTCTGCAATTGGTCTAATGGAAGAAATGTTCCTTGTATGGCAGGATGGAGTGACATGCTTGACCTGGCTTGGGGTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

137

Amino Acids

15.08

Weight (kDa)

6.7

Isoelectric Point (pI)

27.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47840
fragaria_vesca	FvH4_1g12800 FvH4_2g13800
malus_domestica	MD02G1143600.v1.1 MD15G1256800.v1.1
prunus_persica	Prupe.7G158100_v2.0.a1
pyrus_communis	pycom02g11350 pycom11g12090 pycom15g22480
rosa_chinensis	RchiOBHm_Chr2g0100941
rosa_laevigata	RLG00000016992 RLG00000017027
rosa_multiflora	Rmu_sc0001659.1_g000049 Rmu_sc0001862.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141730
rosa_rugosa	Rorug02G0091300 Rorug02G0093800
rosa_samantha	Rh2AG141500 Rh2BG143000 Rh2BG146700 Rh2CG147900 Rh2DG147200
rosa_wichuraiana	Rw2G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 80
AclWI	GGATC	2 cut(s)	135, 148
AcuI	CTGAAG	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	403
AflIII	ACRYGT	1 cut(s)	254
AjnI	CCWGG	2 cut(s)	16, 396
AloI	GAACNNNNNNTCC	2 cut(s)	345, 377
AluBI	AGCT	4 cut(s)	164, 214, 268, 279
AluI	AGCT	4 cut(s)	164, 214, 268, 279
Alw21I	GWGCWC	1 cut(s)	270
AlwI	GGATC	2 cut(s)	135, 148
ApeKI	GCWGC	2 cut(s)	161, 188
AsuHPI	GGTGA	1 cut(s)	265
BamHI	GGATCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	173, 175
BccI	CCATC	2 cut(s)	38, 372
BciT130I	CCWGG	2 cut(s)	18, 398
BfaI	CTAG	1 cut(s)	412
BisI	GCNGC	2 cut(s)	162, 189
BlsI	GCNGC	2 cut(s)	163, 190
Bme1390I	CCNGG	2 cut(s)	18, 398
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	2 cut(s)	18, 398
BpmI	CTGGAG	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
BseBI	CCWGG	2 cut(s)	18, 398
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	3 cut(s)	76, 316, 383
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseXI	GCAGC	2 cut(s)	173, 175
BsiHKAI	GWGCWC	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmFI	GGGAC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	140
BspACI	CCGC	2 cut(s)	5, 80
BspLI	GGNNCC	1 cut(s)	142
BspPI	GGATC	2 cut(s)	135, 148
BspQI	GCTCTTC	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	182
Bst2UI	CCWGG	2 cut(s)	18, 398
Bst4CI	ACNGT	2 cut(s)	124, 176
Bst6I	CTCTTC	1 cut(s)	275
BstF5I	GGATG	3 cut(s)	76, 316, 383
BstKTI	GATC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	140
BstNI	CCWGG	2 cut(s)	18, 398
BstNSI	RCATGY	2 cut(s)	258, 391
BstSCI	CCNGG	2 cut(s)	16, 396
BstV1I	GCAGC	2 cut(s)	173, 175
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BtsCI	GGATG	3 cut(s)	76, 316, 383
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	54, 129
CviAII	CATG	4 cut(s)	97, 255, 263, 388
CviJI	RGCY	7 cut(s)	16, 164, 188, 214, 268, 279, 401
CviKI_1	RGCY	7 cut(s)	16, 164, 188, 214, 268, 279, 401
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
DraI	TTTAAA	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Ecl136II	GAGCTC	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	305
EcoICRI	GAGCTC	1 cut(s)	268
EcoRII	CCWGG	2 cut(s)	16, 396
EcoT14I	CCWWGG	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	4 cut(s)	100, 258, 266, 391
FaiI	YATR	8 cut(s)	11, 98, 203, 256, 264, 317, 371, 389
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	4 cut(s)	96, 254, 262, 387
Fnu4HI	GCNGC	2 cut(s)	162, 189
FokI	GGATG	3 cut(s)	83, 323, 390
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	2 cut(s)	162, 189
FspBI	CTAG	1 cut(s)	412
GluI	GCNGC	2 cut(s)	162, 189
GsuI	CTGGAG	1 cut(s)	39
Hin1II	CATG	4 cut(s)	100, 258, 266, 391
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	2 cut(s)	49, 93
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	2 cut(s)	124, 176
HpyCH4V	TGCA	3 cut(s)	191, 232, 339
Hsp92II	CATG	4 cut(s)	100, 258, 266, 391
Kzo9I	GATC	1 cut(s)	140
LguI	GCTCTTC	1 cut(s)	275
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	7 cut(s)	3, 30, 208, 289, 360, 383, 410
Lsp1109I	GCAGC	2 cut(s)	173, 175
MaeI	CTAG	1 cut(s)	412
MaeIII	GTNAC	4 cut(s)	73, 118, 257, 383
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MboII	GAAGA	2 cut(s)	262, 366
MfeI	CAATTG	2 cut(s)	302, 340
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	2 cut(s)	302, 340
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	2 cut(s)	168, 288
MnlI	CCTC	2 cut(s)	131, 191
MseI	TTAA	2 cut(s)	294, 329
MspR9I	CCNGG	2 cut(s)	18, 398
MunI	CAATTG	2 cut(s)	302, 340
MvaI	CCWGG	2 cut(s)	18, 398
NdeII	GATC	1 cut(s)	140
NlaIII	CATG	4 cut(s)	100, 258, 266, 391
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	2 cut(s)	257, 383
NspI	RCATGY	2 cut(s)	258, 391
PciI	ACATGT	1 cut(s)	254
PciSI	GCTCTTC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	163, 190
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PscI	ACATGT	1 cut(s)	254
Psp124BI	GAGCTC	1 cut(s)	270
Psp6I	CCWGG	2 cut(s)	16, 396
PspGI	CCWGG	2 cut(s)	16, 396
PspN4I	GGNNCC	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	140
SacI	GAGCTC	1 cut(s)	270
SapI	GCTCTTC	1 cut(s)	275
SaqAI	TTAA	2 cut(s)	294, 329
SatI	GCNGC	2 cut(s)	162, 189
Sau3AI	GATC	1 cut(s)	140
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	2 cut(s)	18, 398
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	8 cut(s)	117, 150, 166, 202, 216, 270, 281, 399
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	2 cut(s)	302, 340
SsiI	CCGC	2 cut(s)	5, 80
SspMI	CTAG	1 cut(s)	412
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	2 cut(s)	16, 396
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	2 cut(s)	124, 176
TasI	AATT	2 cut(s)	302, 340
TfiI	GAWTC	1 cut(s)	93
Tru1I	TTAA	2 cut(s)	294, 329
Tru9I	TTAA	2 cut(s)	294, 329
TscAI	CASTG	2 cut(s)	61, 129
TseFI	GTSAC	2 cut(s)	257, 383
TseI	GCWGC	2 cut(s)	161, 188
Tsp45I	GTSAC	2 cut(s)	257, 383
TspDTI	ATGAA	2 cut(s)	26, 85
TspRI	CASTG	2 cut(s)	61, 129
XceI	RCATGY	2 cut(s)	258, 391
XspI	CTAG	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.