Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008424

Physical Location & Seq

Genomic Coordinates Reverse (-)

21858602 .. 21859272

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1256800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTCAATGCTTGAACAAAGGAAACAACTGCAAGCTCATGTTCTGTATGTCGGTTTAGAGTTTACATCTATGGTACAAAGTGCTTTTGTAAATATGTATTTGAAATGTGGAAGTATAAAAGAAGCTGCAAAGATCTTTCATGTAACGAAACTTAGTGATATTATTTCATGGACGACGATGATTAATGGATATGCTGAATGTGGGTTCTACCAAGAAGCCATTGATATGTTTGAGAAGATTCTTAGGTACAATTCAATGAGCAATGACTTTGGGATTAATCTTGCAAAAGAACACTATAGCTGCATGGTTGATCTCCTCTGTCGAGTTGGACGGTTAAGTAAGGCAGAGGATATGATCAAAAGTATGCTATTTCAACATGATGATGTCGTTTGGTCTACTCTCCTTAGAGCTTGTGGGCTCCATGGTGACGTCGATTGTGGAAGATGTGTTGCAGATGAGATCCTTAAATTGGATCCGAGTTTTGCTAAAGGAAAATGGAGGGAAGCGGAAGAAGTAAGGAAAATGATGAGATCAAAGGGGGTAATTAAAGAGCCGGGATGGTCTTGGATAAAGGTCAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

195

Amino Acids

22.28

Weight (kDa)

7.58

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	55 - 83	2.2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47840
fragaria_vesca	FvH4_1g12800 FvH4_2g13800
malus_domestica	MD02G1143600.v1.1 MD15G1256800.v1.1
prunus_persica	Prupe.7G158100_v2.0.a1
pyrus_communis	pycom02g11350 pycom11g12090 pycom15g22480
rosa_chinensis	RchiOBHm_Chr2g0100941
rosa_laevigata	RLG00000016992 RLG00000017027
rosa_multiflora	Rmu_sc0001659.1_g000049 Rmu_sc0001862.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141730
rosa_rugosa	Rorug02G0091300 Rorug02G0093800
rosa_samantha	Rh2AG141500 Rh2BG143000 Rh2BG146700 Rh2CG147900 Rh2DG147200
rosa_wichuraiana	Rw2G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	432
AccI	GTMKAC	1 cut(s)	395
AciI	CCGC	1 cut(s)	506
AclWI	GGATC	3 cut(s)	454, 467, 480
AcyI	GRCGYC	1 cut(s)	429
AfaI	GTAC	2 cut(s)	75, 248
AfiI	CCNNNNNNNGG	1 cut(s)	469
AgsI	TTSAA	4 cut(s)	14, 103, 255, 374
AluBI	AGCT	4 cut(s)	35, 125, 300, 410
AluI	AGCT	4 cut(s)	35, 125, 300, 410
AlwI	GGATC	3 cut(s)	454, 467, 480
ApeKI	GCWGC	2 cut(s)	125, 300
AseI	ATTAAT	2 cut(s)	183, 276
AsuC2I	CCSGG	1 cut(s)	555
AsuHPI	GGTGA	1 cut(s)	437
BamHI	GGATCC	1 cut(s)	472
BanII	GRGCYC	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	112, 287
BccI	CCATC	1 cut(s)	552
BclI	TGATCA	1 cut(s)	354
BcnI	CCSGG	1 cut(s)	555
BfmI	CTRYAG	1 cut(s)	295
BglII	AGATCT	1 cut(s)	132
BisI	GCNGC	2 cut(s)	126, 301
BlsI	GCNGC	2 cut(s)	127, 302
Bme1390I	CCNGG	1 cut(s)	555
BmiI	GGNNCC	2 cut(s)	419, 474
BmrFI	CCNGG	1 cut(s)	555
BpuMI	CCSGG	1 cut(s)	555
BsaHI	GRCGYC	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse3DI	GCAATG	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	421
BseGI	GGATG	1 cut(s)	563
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMI	GCAATG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	2 cut(s)	112, 287
BsiSI	CCGG	1 cut(s)	554
BslI	CCNNNNNNNGG	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	6 cut(s)	132, 310, 354, 459, 472, 530
Bsp19I	CCATGG	1 cut(s)	421
BspACI	CCGC	1 cut(s)	506
BspLI	GGNNCC	2 cut(s)	419, 474
BspPI	GGATC	3 cut(s)	454, 467, 480
BsrDI	GCAATG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	6 cut(s)	132, 310, 354, 459, 472, 530
BssNI	GRCGYC	1 cut(s)	429
BssT1I	CCWWGG	1 cut(s)	421
Bst4CI	ACNGT	1 cut(s)	333
BstACI	GRCGYC	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	3 cut(s)	152, 242, 404
BstDSI	CCRYGG	1 cut(s)	421
BstF5I	GGATG	1 cut(s)	563
BstKTI	GATC	6 cut(s)	135, 313, 357, 462, 475, 533
BstMBI	GATC	6 cut(s)	132, 310, 354, 459, 472, 530
BstSCI	CCNGG	1 cut(s)	553
BstSFI	CTRYAG	1 cut(s)	295
BstV1I	GCAGC	2 cut(s)	112, 287
BstX2I	RGATCY	3 cut(s)	132, 459, 472
BstYI	RGATCY	3 cut(s)	132, 459, 472
BtgI	CCRYGG	1 cut(s)	421
BtsCI	GGATG	1 cut(s)	563
Cac8I	GCNNGC	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	74, 247
CviAII	CATG	6 cut(s)	38, 140, 168, 304, 377, 422
CviJI	RGCY	7 cut(s)	35, 125, 218, 300, 410, 418, 553
CviKI_1	RGCY	7 cut(s)	35, 125, 218, 300, 410, 418, 553
CviQI	GTAC	2 cut(s)	74, 247
DdeI	CTNAG	3 cut(s)	152, 242, 404
DpnI	GATC	6 cut(s)	134, 312, 356, 461, 474, 532
DpnII	GATC	6 cut(s)	132, 310, 354, 459, 472, 530
Eco130I	CCWWGG	1 cut(s)	421
Eco24I	GRGCYC	1 cut(s)	420
EcoT14I	CCWWGG	1 cut(s)	421
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	6 cut(s)	41, 143, 171, 307, 380, 425
FatI	CATG	6 cut(s)	37, 139, 167, 303, 376, 421
FbaI	TGATCA	1 cut(s)	354
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	2 cut(s)	126, 301
FokI	GGATG	1 cut(s)	570
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	2 cut(s)	126, 301
GluI	GCNGC	2 cut(s)	126, 301
HapII	CCGG	1 cut(s)	554
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	6 cut(s)	41, 143, 171, 307, 380, 425
HinfI	GANTC	1 cut(s)	238
HpaII	CCGG	1 cut(s)	554
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	2 cut(s)	63, 396
Hpy188I	TCNGA	1 cut(s)	477
Hpy8I	GTNNAC	2 cut(s)	63, 396
Hpy99I	CGWCG	2 cut(s)	178, 434
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	5 cut(s)	31, 128, 284, 303, 452
HpyF3I	CTNAG	3 cut(s)	152, 242, 404
HpySE526I	ACGT	1 cut(s)	429
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	6 cut(s)	41, 143, 171, 307, 380, 425
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	6 cut(s)	132, 310, 354, 459, 472, 530
LmnI	GCTCC	1 cut(s)	423
LpnPI	CCDG	1 cut(s)	567
Lsp1109I	GCAGC	2 cut(s)	112, 287
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	2 cut(s)	142, 425
MalI	GATC	6 cut(s)	134, 312, 356, 461, 474, 532
MboI	GATC	6 cut(s)	132, 310, 354, 459, 472, 530
MboII	GAAGA	3 cut(s)	247, 453, 521
MflI	RGATCY	3 cut(s)	132, 459, 472
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	3 cut(s)	250, 467, 543
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	3 cut(s)	326, 340, 492
MseI	TTAA	5 cut(s)	183, 276, 335, 465, 546
MslI	CAYNNNNRTG	2 cut(s)	224, 381
MspI	CCGG	1 cut(s)	554
MspR9I	CCNGG	1 cut(s)	555
NciI	CCSGG	1 cut(s)	555
NcoI	CCATGG	1 cut(s)	421
NdeII	GATC	6 cut(s)	132, 310, 354, 459, 472, 530
NlaIII	CATG	6 cut(s)	41, 143, 171, 307, 380, 425
NlaIV	GGNNCC	2 cut(s)	419, 474
NmuCI	GTSAC	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	127, 302
PshBI	ATTAAT	2 cut(s)	183, 276
PspN4I	GGNNCC	2 cut(s)	419, 474
PsuI	RGATCY	3 cut(s)	132, 459, 472
RsaI	GTAC	2 cut(s)	75, 248
RsaNI	GTAC	2 cut(s)	74, 247
RseI	CAYNNNNRTG	2 cut(s)	224, 381
SaqAI	TTAA	5 cut(s)	183, 276, 335, 465, 546
SatI	GCNGC	2 cut(s)	126, 301
Sau3AI	GATC	6 cut(s)	132, 310, 354, 459, 472, 530
ScrFI	CCNGG	1 cut(s)	555
SduI	GDGCHC	1 cut(s)	420
SetI	ASST	7 cut(s)	37, 127, 248, 302, 412, 432, 576
SfcI	CTRYAG	1 cut(s)	295
SmiMI	CAYNNNNRTG	2 cut(s)	224, 381
Sse9I	AATT	3 cut(s)	250, 467, 543
SsiI	CCGC	1 cut(s)	506
StyD4I	CCNGG	1 cut(s)	553
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	1 cut(s)	333
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	2 cut(s)	322, 432
TasI	AATT	3 cut(s)	250, 467, 543
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	5 cut(s)	183, 276, 335, 465, 546
Tru9I	TTAA	5 cut(s)	183, 276, 335, 465, 546
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	2 cut(s)	125, 300
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	2 cut(s)	128, 156
VspI	ATTAAT	2 cut(s)	183, 276
XmiI	GTMKAC	1 cut(s)	395
ZraI	GACGTC	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.