Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008424

Physical Location & Seq

Genomic Coordinates Forward (+)

12305922 .. 12306902

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG143000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGACCACAGTAATTGCACGGTATTCTCAAGCAGGTTATGGGAAGAAGCTTTCAAGTGTTTGTTGTGGATGAGAAGGGAAAAACCAAAACCAAACGAGTATGCTTTTGCAAGTGTATTAAGTGTTTGTGGAAGCATGGCAATGCTTGAGCAAGGTAAGCAATTGCATGCTTATGTCCTAACGGTTGGTCTAGATTCTGAAGCTATGGTACAAAGTGCCTTAGTCAATCTGTACTCGAAATGTGAAAGTATACAAGAGGCTGCAAAAATCTTTGATGTGACAAAAGCAAAAGATGATGATGTTATTTCATGGACGTCCAAGATTAATGGATATGCTCAACATGGGTACTACCAAGAAGCCATTGATGTGTTTGAGAAGCTTCCTACGGTTGGTCTGAAACCAGACTCAGTTACCTTCATTGTTGTTACCTTCATTGGTGTTCTTGCTGCGTGTAGCCATGCTGGACTAGTTGATCTTGGTTTCCACTACTTCAATTCAATGAGAAATGACTTTAAGATTAGTCCTTCAAAAGAACAATACGGCTGCATGATTGATCTCCTTTGTCGAGCTGGACGGTTAAGTGAGGCAGAGCATATTATCAGAAGTATGCCAGTTCAACAGGATGATGTTGTCTGGTCTACTCTACTTACAGCATGTAGGCTCCATGGTGATGTTGACTGCAGAAGATGCGCTGCAGAGGAGATTCTTAAATTCAATCCTAATTGTGCAGTGACTCACATAACGCTAGCTAGTGTTTATGCTGCCAAAGGAATGTGGAGGGAAGCAGCAGCAGTAAGGAGAATGATGAGATCAAAGGGCGTAATTAAGGAACCTGGATGGTCTGGGATAGAGGTCAAGAATGGGATTTCTGTGTTTGTTGCTGGAGATAGGTCTCATCCACAAGGTGATGAGATATATAGTGTGCTGGAATTACTAGATTCAAGGGCAGATATTTCTACTCGGGAAACAGTTCTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

326

Amino Acids

36.39

Weight (kDa)

6.07

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	100 - 140	8.1e-08	PPR repeat family
E_motif	PF20431	222 - 284	3.8e-08	E motif
Eplus_motif	PF20430	292 - 310	2.4e-06	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47840
fragaria_vesca	FvH4_1g12800 FvH4_2g13800
malus_domestica	MD02G1143600.v1.1 MD15G1256800.v1.1
prunus_persica	Prupe.7G158100_v2.0.a1
pyrus_communis	pycom02g11350 pycom11g12090 pycom15g22480
rosa_chinensis	RchiOBHm_Chr2g0100941
rosa_laevigata	RLG00000016992 RLG00000017027
rosa_multiflora	Rmu_sc0001659.1_g000049 Rmu_sc0001862.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141730
rosa_rugosa	Rorug02G0091300 Rorug02G0093800
rosa_samantha	Rh2AG141500 Rh2BG143000 Rh2BG146700 Rh2CG147900 Rh2DG147200
rosa_wichuraiana	Rw2G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	317
Acc36I	ACCTGC	1 cut(s)	24
AccI	GTMKAC	2 cut(s)	250, 638
AcsI	RAATTY	1 cut(s)	710
AcuI	CTGAAG	1 cut(s)	219
AcyI	GRCGYC	1 cut(s)	314
AdeI	CACNNNGTG	1 cut(s)	905
AfaI	GTAC	3 cut(s)	210, 233, 347
AfiI	CCNNNNNNNGG	1 cut(s)	389
AgsI	TTSAA	7 cut(s)	55, 493, 498, 528, 617, 715, 942
AhlI	ACTAGT	1 cut(s)	466
AjnI	CCWGG	1 cut(s)	832
AluBI	AGCT	5 cut(s)	50, 203, 379, 569, 749
AluI	AGCT	5 cut(s)	50, 203, 379, 569, 749
Alw26I	GTCTC	1 cut(s)	897
Ama87I	CYCGRG	1 cut(s)	960
ApeKI	GCWGC	7 cut(s)	260, 446, 543, 692, 761, 785, 788
ApoI	RAATTY	1 cut(s)	710
AseI	ATTAAT	1 cut(s)	324
Asp700I	GAANNNNTTC	1 cut(s)	969
AspLEI	GCGC	1 cut(s)	692
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	680, 917
AsuNHI	GCTAGC	1 cut(s)	745
AvaI	CYCGRG	1 cut(s)	960
AvaII	GGWCC	1 cut(s)	4
BarI	GAAGNNNNNNTAC	2 cut(s)	192, 224
BbvI	GCAGC	7 cut(s)	247, 433, 530, 679, 748, 797, 800
BccI	CCATC	1 cut(s)	831
BceAI	ACGGC	1 cut(s)	556
BciT130I	CCWGG	1 cut(s)	834
BcoDI	GTCTC	1 cut(s)	897
BcuI	ACTAGT	1 cut(s)	466
BfaI	CTAG	5 cut(s)	191, 467, 746, 750, 935
BfmI	CTRYAG	2 cut(s)	679, 693
BfuAI	ACCTGC	1 cut(s)	24
BisI	GCNGC	7 cut(s)	261, 447, 544, 693, 762, 786, 789
BlsI	GCNGC	7 cut(s)	262, 448, 545, 694, 763, 787, 790
Bme1390I	CCNGG	1 cut(s)	834
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	960
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	662, 831
BmrFI	CCNGG	1 cut(s)	834
BmsI	GCATC	1 cut(s)	677
BmtI	GCTAGC	1 cut(s)	749
BpmI	CTGGAG	1 cut(s)	903
BpuEI	CTTGAG	2 cut(s)	13, 167
BsaHI	GRCGYC	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	897
BsaJI	CCNNGG	1 cut(s)	664
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	611
Bse3DI	GCAATG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	834
BseDI	CCNNGG	1 cut(s)	664
BseGI	GGATG	4 cut(s)	75, 628, 842, 895
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	611
BseRI	GAGGAG	1 cut(s)	713
BseXI	GCAGC	7 cut(s)	247, 433, 530, 679, 748, 797, 800
BsgI	GTGCAG	1 cut(s)	747
BsiHKCI	CYCGRG	1 cut(s)	960
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	1 cut(s)	897
Bso31I	GGTCTC	1 cut(s)	897
BsoBI	CYCGRG	1 cut(s)	960
Bsp143I	GATC	3 cut(s)	472, 553, 809
Bsp19I	CCATGG	1 cut(s)	664
BspCNI	CTCAG	1 cut(s)	419
BspLI	GGNNCC	2 cut(s)	662, 831
BspMAI	CTGCAG	2 cut(s)	683, 697
BspMI	ACCTGC	1 cut(s)	24
BspOI	GCTAGC	1 cut(s)	749
BspTNI	GGTCTC	1 cut(s)	897
BsrDI	GCAATG	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	611
BssECI	CCNNGG	1 cut(s)	664
BssMI	GATC	3 cut(s)	472, 553, 809
BssNAI	GTATAC	1 cut(s)	251
BssNI	GRCGYC	1 cut(s)	314
BssT1I	CCWWGG	1 cut(s)	664
Bst1107I	GTATAC	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	834
Bst4CI	ACNGT	6 cut(s)	11, 22, 184, 388, 576, 970
BstACI	GRCGYC	1 cut(s)	314
BstAPI	GCANNNNNTGC	1 cut(s)	687
BstC8I	GCNNGC	2 cut(s)	168, 747
BstDEI	CTNAG	2 cut(s)	220, 406
BstDSI	CCRYGG	1 cut(s)	664
BstF5I	GGATG	4 cut(s)	75, 628, 842, 895
BstHHI	GCGC	1 cut(s)	692
BstKTI	GATC	3 cut(s)	475, 556, 812
BstMAI	GTCTC	1 cut(s)	897
BstMBI	GATC	3 cut(s)	472, 553, 809
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 687
BstNI	CCWGG	1 cut(s)	834
BstNSI	RCATGY	2 cut(s)	170, 657
BstSCI	CCNGG	1 cut(s)	832
BstSFI	CTRYAG	2 cut(s)	679, 693
BstV1I	GCAGC	7 cut(s)	247, 433, 530, 679, 748, 797, 800
BstZ17I	GTATAC	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	664
BtsCI	GGATG	4 cut(s)	75, 628, 842, 895
BtsI	GCAGTG	1 cut(s)	735
BtsIMutI	CAGTG	1 cut(s)	735
BveI	ACCTGC	1 cut(s)	24
Cac8I	GCNNGC	2 cut(s)	168, 747
CfoI	GCGC	1 cut(s)	692
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	3 cut(s)	209, 232, 346
CspCI	CAANNNNNGTGG	1 cut(s)	31
CviAII	CATG	8 cut(s)	136, 167, 309, 341, 458, 547, 654, 665
CviQI	GTAC	3 cut(s)	209, 232, 346
DdeI	CTNAG	2 cut(s)	220, 406
DpnI	GATC	3 cut(s)	474, 555, 811
DpnII	GATC	3 cut(s)	472, 553, 809
DraIII	CACNNNGTG	1 cut(s)	905
Eco130I	CCWWGG	1 cut(s)	664
Eco31I	GGTCTC	1 cut(s)	897
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	960
EcoRII	CCWGG	1 cut(s)	832
EcoT14I	CCWWGG	1 cut(s)	664
ErhI	CCWWGG	1 cut(s)	664
FaeI	CATG	8 cut(s)	139, 170, 312, 344, 461, 550, 657, 668
FatI	CATG	8 cut(s)	135, 166, 308, 340, 457, 546, 653, 664
FblI	GTMKAC	2 cut(s)	250, 638
Fnu4HI	GCNGC	7 cut(s)	261, 447, 544, 693, 762, 786, 789
FokI	GGATG	4 cut(s)	82, 635, 849, 882
Fsp4HI	GCNGC	7 cut(s)	261, 447, 544, 693, 762, 786, 789
FspBI	CTAG	5 cut(s)	191, 467, 746, 750, 935
GlaI	GCGC	1 cut(s)	691
GluI	GCNGC	7 cut(s)	261, 447, 544, 693, 762, 786, 789
GsuI	CTGGAG	1 cut(s)	903
HhaI	GCGC	1 cut(s)	692
Hin1I	GRCGYC	1 cut(s)	314
Hin1II	CATG	8 cut(s)	139, 170, 312, 344, 461, 550, 657, 668
Hin6I	GCGC	1 cut(s)	690
HinP1I	GCGC	1 cut(s)	690
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HindIII	AAGCTT	2 cut(s)	48, 377
HinfI	GANTC	5 cut(s)	194, 404, 703, 733, 938
HphI	GGTGA	2 cut(s)	680, 917
Hpy166II	GTNNAC	3 cut(s)	251, 639, 676
Hpy188I	TCNGA	3 cut(s)	199, 396, 602
Hpy188III	TCNNGA	3 cut(s)	191, 856, 962
Hpy8I	GTNNAC	3 cut(s)	251, 639, 676
HpyAV	CCTTC	4 cut(s)	69, 424, 439, 534
HpyCH4III	ACNGT	6 cut(s)	11, 22, 184, 388, 576, 970
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	8 cut(s)	18, 110, 166, 263, 546, 681, 695, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 687
HpyF3I	CTNAG	2 cut(s)	220, 406
HpySE526I	ACGT	1 cut(s)	314
Hsp92I	GRCGYC	1 cut(s)	314
Hsp92II	CATG	8 cut(s)	139, 170, 312, 344, 461, 550, 657, 668
HspAI	GCGC	1 cut(s)	690
Kzo9I	GATC	3 cut(s)	472, 553, 809
LmnI	GCTCC	1 cut(s)	666
Lsp1109I	GCAGC	7 cut(s)	247, 433, 530, 679, 748, 797, 800
LweI	GCATC	1 cut(s)	677
MaeI	CTAG	5 cut(s)	191, 467, 746, 750, 935
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	4 cut(s)	277, 409, 424, 730
MalI	GATC	3 cut(s)	474, 555, 811
MboI	GATC	3 cut(s)	472, 553, 809
MboII	GAAGA	3 cut(s)	56, 696, 965
MfeI	CAATTG	1 cut(s)	161
MluCI	AATT	7 cut(s)	13, 161, 493, 710, 721, 822, 929
MlyI	GAGTC	2 cut(s)	398, 727
MnlI	CCTC	5 cut(s)	250, 577, 691, 771, 844
MroXI	GAANNNNTTC	1 cut(s)	969
MseI	TTAA	6 cut(s)	119, 324, 513, 578, 708, 825
MslI	CAYNNNNRTG	4 cut(s)	140, 171, 365, 669
MspR9I	CCNGG	1 cut(s)	834
MunI	CAATTG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	834
MwoI	GCNNNNNNNGC	2 cut(s)	157, 687
NcoI	CCATGG	1 cut(s)	664
NdeII	GATC	3 cut(s)	472, 553, 809
NheI	GCTAGC	1 cut(s)	745
NlaIII	CATG	8 cut(s)	139, 170, 312, 344, 461, 550, 657, 668
NlaIV	GGNNCC	2 cut(s)	662, 831
NmuCI	GTSAC	2 cut(s)	277, 730
NspI	RCATGY	2 cut(s)	170, 657
PaeI	GCATGC	1 cut(s)	170
PdmI	GAANNNNTTC	1 cut(s)	969
PfeI	GAWTC	3 cut(s)	194, 703, 938
PkrI	GCNGC	7 cut(s)	262, 448, 545, 694, 763, 787, 790
PleI	GAGTC	2 cut(s)	398, 727
PpsI	GAGTC	2 cut(s)	398, 727
PshBI	ATTAAT	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	832
PspGI	CCWGG	1 cut(s)	832
PspN4I	GGNNCC	2 cut(s)	662, 831
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	2 cut(s)	683, 697
RsaI	GTAC	3 cut(s)	210, 233, 347
RsaNI	GTAC	3 cut(s)	209, 232, 346
RseI	CAYNNNNRTG	4 cut(s)	140, 171, 365, 669
SaqAI	TTAA	6 cut(s)	119, 324, 513, 578, 708, 825
SatI	GCNGC	7 cut(s)	261, 447, 544, 693, 762, 786, 789
Sau3AI	GATC	3 cut(s)	472, 553, 809
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	398, 727
ScrFI	CCNGG	1 cut(s)	834
SfaNI	GCATC	1 cut(s)	677
SfcI	CTRYAG	2 cut(s)	679, 693
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	4 cut(s)	140, 171, 365, 669
SmlI	CTYRAG	2 cut(s)	28, 146
SmoI	CTYRAG	2 cut(s)	28, 146
SpeI	ACTAGT	1 cut(s)	466
SphI	GCATGC	1 cut(s)	170
Sse9I	AATT	7 cut(s)	13, 161, 493, 710, 721, 822, 929
SspMI	CTAG	5 cut(s)	191, 467, 746, 750, 935
StyD4I	CCNGG	1 cut(s)	832
StyI	CCWWGG	1 cut(s)	664
TaaI	ACNGT	6 cut(s)	11, 22, 184, 388, 576, 970
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	2 cut(s)	236, 565
TasI	AATT	7 cut(s)	13, 161, 493, 710, 721, 822, 929
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	3 cut(s)	194, 703, 938
Tru1I	TTAA	6 cut(s)	119, 324, 513, 578, 708, 825
Tru9I	TTAA	6 cut(s)	119, 324, 513, 578, 708, 825
TscAI	CASTG	1 cut(s)	735
TseFI	GTSAC	2 cut(s)	277, 730
TseI	GCWGC	7 cut(s)	260, 446, 543, 692, 761, 785, 788
Tsp45I	GTSAC	2 cut(s)	277, 730
TspDTI	ATGAA	4 cut(s)	297, 406, 421, 965
TspRI	CASTG	1 cut(s)	735
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	1 cut(s)	324
XapI	RAATTY	1 cut(s)	710
XbaI	TCTAGA	1 cut(s)	190
XceI	RCATGY	2 cut(s)	170, 657
XmiI	GTMKAC	2 cut(s)	250, 638
XmnI	GAANNNNTTC	1 cut(s)	969
XspI	CTAG	5 cut(s)	191, 467, 746, 750, 935
ZraI	GACGTC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.