Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002938

Physical Location & Seq

Genomic Coordinates Reverse (-)

7687563 .. 7692733

Gene Structure 5171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0093800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2067 bp

ATGAAGAAATCACCGTTGCCATTACAGAACGCAAGCGGCGCGAGTAAGAATCAGAAGCTCGGAAAGGAAGCGCTGGTGAAGCTACTGAGATGGCATTTCGGTCATCCTGGATTCAGAGGGAAGCAATTGGAGGCCATTGAAGCTGTTCTATCAGGAAGAGATTGTTTCTGCTTGATGCCAACCGGAGGCGGGAAGTCGATGTGTTATCAGATACCGGCGCTGGCCAAGAAGACCGGAATCGTGCTTGTTGTGTGTCCTTTGATAGCTTTGATGGAAAACCAAGTGATGGCTTTGAAGGAGAAAGGAATTTCTGCTGAATATCTATCCTCCACACAGACTACACAAGTCAAAAATAAGATACATGAAGACCTTGATTCTGGAAAACCATCTTTGAGGCTGCTATATGTGACGCCGGAATTGATTGCAACACCTGGATTTATGACAAAGCTGACAAAGATTCACTCAAGAGGGTTGTTAAATCTTATTGCCATAGACGAGGCACATTGCATCTCTTCATGGGGCCATGATTTTAGGCCTAGCTATCGAAAGCTGTCGTCTTTGAGGAGCCACCTCCCAGGTGTACCAACATTAGCTTTGACAGCTACAGCCGTTCCTAAAGTTCAGAAGGATGTGATAGAGTCCTTACGCCTCCAAAACCCTTTAGTCCTAAAATCTTCTTTCAATCGTTCTAATATATATTATGAAGTTCGATACAAAGATCTTTTACACGATGTGTATGCTGATTTATCTGACGTACTAAAATCTAGTGGAGATATCTGTGCAATTGTCTACTGCCTTGAACGAACAATGTGCGATTACTTATCTGTTCATCTATCACAAAACGGGATATCATGTGCTGCTTATCATGCAGGGTTGAATGATAAATTACGCAGTTCAGTTTTAGATGATTGGATTTCTTCTAAAATACAAGTTGTCGTGGCAACGGTGGCTTTTGGGATGGGTATAGATAGAAAAGATGTCAGAATTGTTTGCCATTTTAATATTCCGAAGTCAATGGAAGGCTTCTACCAAGAGTCTGGTAGAGCTGGTCGTGATCAATTACCCTCCAGAAGCCTATTGTATTATGGAATTGAAGATTGCAAGAGAATGAAATTTATTCTAAGCAATGCTGAGAACAAGAAATCAAAGGCCTCAAACTCACAAGAAGAGTTGTCAAAAAAATCCCTGACTGACTTTCAACAGATGGTTGAGTATTGTGAGGGCTCTGGATGCCGGAGGAAAAAGATCCTTGAGAATTTTGGTGAAAAGGTACCTGTAACACTGTGTAGCAAAACATGTGATGCCTGCAAACATCCAAACCTCGTAGCCAAATACTTGGAGGAGCTCGCAACTGCTTGTATCGTCCGGCAGAAAGCTGGTTCATCTCGAATTTTTGTGGGCAGCTCCTCAAATAAGGTTAATGAAGATCAGTCCTCTGAATTCTGGAACTGTGATGATGAAGCAAGTTGTTCTGAGGAAGACATATCTGATTCTGATGATGATGTTGCGGACCTTGTAGCTGTCAAGAGCCTTACCAGATCAAAGTTGATCGATGAAAAATTGGAAGCCTTGCAGCGTGCAGAAGAAAAATATTACCAGAATAAATCTGATAAGCAGACGGATAAACTTAACAAGAATGCTATATCTGATACGCTGAGAGAAGCAAGCAAGCAGAGATTAGAAAATGCTGTAAAGCAGGCTCAGCAACGACTTGGAAACTTAAAGATTGAGGTGGAAATATCGGCATCTTTCCTTGAAAATGAATGTTACAAAAAATATGGGAAAACTGGGAAATCATTCTATTATTCTCAAGTCGCAAGTACAGTGAGGTGGTTATCAACCGTAAATTCTACTGACTTAACTGATCGTCTCGGCACCATAACCAGTTCCCCGTCAGAGAATACTCCGCTCAAAACAGCACCTTCTGCATCACAATCGCCATTGGTGGAGACAGGACCTTTTGCAACGCCATCACCTTTGGTGGACATAGCAACAGAAATCACCAGAAATGACTTACATGAGAGTGTTAGACCGGAAGCTTCTGTAGCTGTCACCAACGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

688

Amino Acids

76.24

Weight (kDa)

8.55

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	42 - 207	2.2e-26	DEAD/DEAH box helicase
Helicase_C	PF00271	247 - 352	1.5e-17	Helicase conserved C-terminal domain
RecQ_Zn_bind	PF16124	365 - 437	2.2e-12	RecQ zinc-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50920 AT3G50920 AT5G66450 AT5G66450 AT5G66450 AT5G66450 AT5G66450
fragaria_vesca	FvH4_1g12790
malus_domestica	MD02G1143500.v1.1 MD15G1256700.v1.1
prunus_persica	Prupe.7G158200_v2.0.a1
pyrus_communis	pycom02g11340 pycom15g22470
rosa_chinensis	RchiOBHm_Chr2g0100911 RchiOBHm_Chr2g0100921 RchiOBHm_Chr2g0100931
rosa_laevigata	RLG00000016993 RLG00000017024 RLG00000017026
rosa_multiflora	Rmu_sc0001659.1_g000048 Rmu_sc0001862.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141740 Rroxscaffold_6G00391440
rosa_rugosa	Rorug02G0093700 Rorug02G0093800 Rorug02G0093800
rosa_samantha	Rh2AG139800 Rh2AG141300 Rh2AG141400 Rh2BG143100 Rh2BG146500 Rh2BG146600 Rh2CG147700 Rh2CG147800 Rh2DG147000 Rh2DG147100
rosa_wichuraiana	Rw2G011080 Rw2G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1270
AccB1I	GGYRCC	2 cut(s)	1270, 1874
AccB7I	CCANNNNNTGG	1 cut(s)	286
AccBSI	CCGCTC	1 cut(s)	1909
AccI	GTMKAC	1 cut(s)	789
AccII	CGCG	1 cut(s)	41
AciI	CCGC	4 cut(s)	36, 189, 1508, 1907
AclWI	GGATC	1 cut(s)	1240
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	6 cut(s)	306, 1112, 1255, 1389, 1439, 1846
AcyI	GRCGYC	1 cut(s)	410
AdeI	CACNNNGTG	1 cut(s)	733
AfaI	GTAC	4 cut(s)	582, 756, 1272, 1822
AfeI	AGCGCT	1 cut(s)	72
AfiI	CCNNNNNNNGG	3 cut(s)	185, 189, 286
AflIII	ACRYGT	1 cut(s)	1295
AgsI	TTSAA	8 cut(s)	140, 295, 682, 800, 877, 1094, 1199, 1757
AjnI	CCWGG	3 cut(s)	106, 430, 574
Alw21I	GWGCWC	1 cut(s)	1347
Alw26I	GTCTC	2 cut(s)	1874, 1943
AlwI	GGATC	1 cut(s)	1240
Aor51HI	AGCGCT	1 cut(s)	72
AoxI	GGCC	5 cut(s)	132, 222, 520, 533, 1149
ApeKI	GCWGC	4 cut(s)	397, 857, 1401, 1573
ApoI	RAATTY	6 cut(s)	306, 1112, 1255, 1389, 1439, 1846
Asp700I	GAANNNNTTC	2 cut(s)	144, 1796
Asp718I	GGTACC	1 cut(s)	1270
AspLEI	GCGC	3 cut(s)	41, 73, 220
AspS9I	GGNCC	3 cut(s)	520, 1510, 1955
AsuHPI	GGTGA	6 cut(s)	3, 88, 1274, 1965, 1993, 2044
AvaII	GGWCC	2 cut(s)	1510, 1955
BalI	TGGCCA	1 cut(s)	224
BanI	GGYRCC	2 cut(s)	1270, 1874
BanII	GRGCYC	2 cut(s)	1226, 1347
BbsI	GAAGAC	3 cut(s)	236, 372, 1485
Bbv12I	GWGCWC	1 cut(s)	1347
BbvI	GCAGC	4 cut(s)	384, 844, 1413, 1585
BccI	CCATC	7 cut(s)	84, 265, 280, 394, 952, 1198, 1978
BceAI	ACGGC	1 cut(s)	593
BcgI	CGANNNNNNTGC	6 cut(s)	719, 753, 792, 826, 1917, 1951
BciT130I	CCWGG	3 cut(s)	108, 432, 576
BclI	TGATCA	1 cut(s)	1054
BcoDI	GTCTC	2 cut(s)	1874, 1943
BfaI	CTAG	2 cut(s)	537, 765
BfmI	CTRYAG	2 cut(s)	603, 2043
BfoI	RGCGCY	2 cut(s)	74, 221
BglII	AGATCT	1 cut(s)	718
BisI	GCNGC	5 cut(s)	37, 398, 858, 1402, 1574
BlpI	GCTNAGC	1 cut(s)	1701
BlsI	GCNGC	5 cut(s)	38, 399, 859, 1403, 1575
Bme1390I	CCNGG	3 cut(s)	108, 432, 576
Bme18I	GGWCC	2 cut(s)	1510, 1955
BmgT120I	GGNCC	3 cut(s)	520, 1510, 1955
BmiI	GGNNCC	4 cut(s)	521, 566, 1272, 1876
BmrFI	CCNGG	3 cut(s)	108, 432, 576
BmrI	ACTGGG	1 cut(s)	1797
BmsI	GCATC	6 cut(s)	165, 516, 1220, 1291, 1754, 1937
BmuI	ACTGGG	1 cut(s)	1797
BpiI	GAAGAC	3 cut(s)	236, 372, 1485
BpmI	CTGGAG	1 cut(s)	1051
Bpu1102I	GCTNAGC	1 cut(s)	1701
BpuEI	CTTGAG	3 cut(s)	448, 1271, 1794
Bsa29I	ATCGAT	1 cut(s)	1551
BsaHI	GRCGYC	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	574
BsaWI	WCCGGW	3 cut(s)	182, 233, 2032
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 189, 286
Bse118I	RCCGGY	1 cut(s)	214
Bse1I	ACTGG	2 cut(s)	1792, 1884
Bse3DI	GCAATG	2 cut(s)	502, 1132
BseBI	CCWGG	3 cut(s)	108, 432, 576
BseCI	ATCGAT	1 cut(s)	1551
BseDI	CCNNGG	1 cut(s)	574
BseGI	GGATG	5 cut(s)	103, 634, 963, 1235, 1312
BseLI	CCNNNNNNNGG	3 cut(s)	185, 189, 286
BseMI	GCAATG	2 cut(s)	502, 1132
BseMII	CTCAG	5 cut(s)	77, 1122, 1464, 1646, 1715
BseNI	ACTGG	2 cut(s)	1792, 1884
BseRI	GAGGAG	3 cut(s)	577, 1355, 1396
BseXI	GCAGC	4 cut(s)	384, 844, 1413, 1585
BsgI	GTGCAG	1 cut(s)	1599
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	5 cut(s)	134, 224, 522, 535, 1151
BshNI	GGYRCC	2 cut(s)	1270, 1874
BshVI	ATCGAT	1 cut(s)	1551
BsiHKAI	GWGCWC	1 cut(s)	1347
BsiSI	CCGG	7 cut(s)	183, 215, 234, 413, 1234, 1366, 2033
BslI	CCNNNNNNNGG	3 cut(s)	185, 189, 286
BsmAI	GTCTC	2 cut(s)	1874, 1943
BsmBI	CGTCTC	1 cut(s)	1874
BsmI	GAATGC	1 cut(s)	1642
BsnI	GGCC	5 cut(s)	134, 224, 522, 535, 1151
Bsp1286I	GDGCHC	2 cut(s)	1226, 1347
Bsp143I	GATC	7 cut(s)	718, 1054, 1245, 1426, 1538, 1548, 1864
Bsp1720I	GCTNAGC	1 cut(s)	1701
BspACI	CCGC	4 cut(s)	36, 189, 1508, 1907
BspANI	GGCC	5 cut(s)	134, 224, 522, 535, 1151
BspCNI	CTCAG	5 cut(s)	78, 1123, 1465, 1647, 1714
BspDI	ATCGAT	1 cut(s)	1551
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	4 cut(s)	521, 566, 1272, 1876
BspPI	GGATC	1 cut(s)	1240
BspT107I	GGYRCC	2 cut(s)	1270, 1874
BsrBI	CCGCTC	1 cut(s)	1909
BsrDI	GCAATG	2 cut(s)	502, 1132
BsrFI	RCCGGY	1 cut(s)	214
BsrI	ACTGG	2 cut(s)	1792, 1884
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	574
BssMI	GATC	7 cut(s)	718, 1054, 1245, 1426, 1538, 1548, 1864
BssNI	GRCGYC	1 cut(s)	410
Bst2UI	CCWGG	3 cut(s)	108, 432, 576
Bst4CI	ACNGT	6 cut(s)	15, 946, 1284, 1451, 1825, 1843
Bst6I	CTCTTC	3 cut(s)	151, 517, 1161
BstACI	GRCGYC	1 cut(s)	410
BstAPI	GCANNNNNTGC	1 cut(s)	1925
BstC8I	GCNNGC	8 cut(s)	34, 222, 1306, 1347, 1578, 1666, 1670, 1698
BstDEI	CTNAG	6 cut(s)	86, 1121, 1131, 1473, 1655, 1701
BstF5I	GGATG	5 cut(s)	103, 634, 963, 1235, 1312
BstFNI	CGCG	1 cut(s)	41
BstH2I	RGCGCY	2 cut(s)	74, 221
BstHHI	GCGC	3 cut(s)	41, 73, 220
BstKTI	GATC	7 cut(s)	721, 1057, 1248, 1429, 1541, 1551, 1867
BstMAI	GTCTC	2 cut(s)	1874, 1943
BstMBI	GATC	7 cut(s)	718, 1054, 1245, 1426, 1538, 1548, 1864
BstNI	CCWGG	3 cut(s)	108, 432, 576
BstNSI	RCATGY	1 cut(s)	1299
BstSCI	CCNGG	3 cut(s)	106, 430, 574
BstSFI	CTRYAG	2 cut(s)	603, 2043
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	4 cut(s)	384, 844, 1413, 1585
BstV2I	GAAGAC	3 cut(s)	236, 372, 1485
BstX2I	RGATCY	2 cut(s)	718, 1245
BstXI	CCANNNNNNTGG	2 cut(s)	1037, 1336
BstYI	RGATCY	2 cut(s)	718, 1245
Bsu15I	ATCGAT	1 cut(s)	1551
BsuRI	GGCC	5 cut(s)	134, 224, 522, 535, 1151
BsuTUI	ATCGAT	1 cut(s)	1551
BtsCI	GGATG	5 cut(s)	103, 634, 963, 1235, 1312
BtsIMutI	CAGTG	2 cut(s)	1280, 1830
Cac8I	GCNNGC	8 cut(s)	34, 222, 1306, 1347, 1578, 1666, 1670, 1698
CfoI	GCGC	3 cut(s)	41, 73, 220
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	3 cut(s)	520, 1510, 1955
ClaI	ATCGAT	1 cut(s)	1551
CseI	GACGC	1 cut(s)	418
Csp6I	GTAC	4 cut(s)	581, 755, 1271, 1821
CviAII	CATG	7 cut(s)	362, 516, 524, 852, 866, 1296, 2018
CviQI	GTAC	4 cut(s)	581, 755, 1271, 1821
DdeI	CTNAG	6 cut(s)	86, 1121, 1131, 1473, 1655, 1701
DpnI	GATC	7 cut(s)	720, 1056, 1247, 1428, 1540, 1550, 1866
DpnII	GATC	7 cut(s)	718, 1054, 1245, 1426, 1538, 1548, 1864
DraIII	CACNNNGTG	1 cut(s)	733
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	3 cut(s)	151, 517, 1161
EarI	CTCTTC	3 cut(s)	151, 517, 1161
Ecl136II	GAGCTC	1 cut(s)	1345
Eco147I	AGGCCT	2 cut(s)	535, 1151
Eco24I	GRGCYC	2 cut(s)	1226, 1347
Eco32I	GATATC	2 cut(s)	775, 849
Eco47I	GGWCC	2 cut(s)	1510, 1955
Eco47III	AGCGCT	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	1345
EcoICRI	GAGCTC	1 cut(s)	1345
EcoO109I	RGGNCCY	1 cut(s)	1955
EcoRI	GAATTC	1 cut(s)	1439
EcoRII	CCWGG	3 cut(s)	106, 430, 574
EcoRV	GATATC	2 cut(s)	775, 849
EcoT38I	GRGCYC	2 cut(s)	1226, 1347
Esp3I	CGTCTC	1 cut(s)	1874
FaeI	CATG	7 cut(s)	365, 519, 527, 855, 869, 1299, 2021
FatI	CATG	7 cut(s)	361, 515, 523, 851, 865, 1295, 2017
FauI	CCCGC	1 cut(s)	182
FbaI	TGATCA	1 cut(s)	1054
FblI	GTMKAC	1 cut(s)	789
Fnu4HI	GCNGC	5 cut(s)	37, 398, 858, 1402, 1574
FokI	GGATG	5 cut(s)	90, 641, 970, 1242, 1299
FriOI	GRGCYC	2 cut(s)	1226, 1347
Fsp4HI	GCNGC	5 cut(s)	37, 398, 858, 1402, 1574
FspBI	CTAG	2 cut(s)	537, 765
GlaI	GCGC	3 cut(s)	40, 72, 219
GluI	GCNGC	5 cut(s)	37, 398, 858, 1402, 1574
GsuI	CTGGAG	1 cut(s)	1051
HaeII	RGCGCY	2 cut(s)	74, 221
HaeIII	GGCC	5 cut(s)	134, 224, 522, 535, 1151
HapII	CCGG	7 cut(s)	183, 215, 234, 413, 1234, 1366, 2033
HgaI	GACGC	1 cut(s)	418
HhaI	GCGC	3 cut(s)	41, 73, 220
Hin1I	GRCGYC	1 cut(s)	410
Hin1II	CATG	7 cut(s)	365, 519, 527, 855, 869, 1299, 2021
Hin6I	GCGC	3 cut(s)	39, 71, 218
HinP1I	GCGC	3 cut(s)	39, 71, 218
HindIII	AAGCTT	1 cut(s)	2037
HinfI	GANTC	8 cut(s)	49, 111, 237, 374, 457, 638, 1034, 1490
HpaII	CCGG	7 cut(s)	183, 215, 234, 413, 1234, 1366, 2033
HphI	GGTGA	6 cut(s)	3, 88, 1274, 1965, 1993, 2044
Hpy166II	GTNNAC	3 cut(s)	581, 790, 1984
Hpy188III	TCNNGA	9 cut(s)	153, 378, 465, 1052, 1068, 1227, 1386, 1444, 1525
Hpy8I	GTNNAC	3 cut(s)	581, 790, 1984
HpyAV	CCTTC	4 cut(s)	289, 619, 1013, 1932
HpyCH4III	ACNGT	6 cut(s)	15, 946, 1284, 1451, 1825, 1843
HpyCH4IV	ACGT	1 cut(s)	753
HpyF3I	CTNAG	6 cut(s)	86, 1121, 1131, 1473, 1655, 1701
HpySE526I	ACGT	1 cut(s)	753
Hsp92I	GRCGYC	1 cut(s)	410
Hsp92II	CATG	7 cut(s)	365, 519, 527, 855, 869, 1299, 2021
HspAI	GCGC	3 cut(s)	39, 71, 218
KpnI	GGTACC	1 cut(s)	1274
Ksp22I	TGATCA	1 cut(s)	1054
Kzo9I	GATC	7 cut(s)	718, 1054, 1245, 1426, 1538, 1548, 1864
LmnI	GCTCC	3 cut(s)	564, 1342, 1409
Lsp1109I	GCAGC	4 cut(s)	384, 844, 1413, 1585
LweI	GCATC	6 cut(s)	165, 516, 1220, 1291, 1754, 1937
MaeI	CTAG	2 cut(s)	537, 765
MaeII	ACGT	1 cut(s)	753
MaeIII	GTNAC	4 cut(s)	406, 1276, 1766, 2050
MalI	GATC	7 cut(s)	720, 1056, 1247, 1428, 1540, 1550, 1866
MbiI	CCGCTC	1 cut(s)	1909
MboI	GATC	7 cut(s)	718, 1054, 1245, 1426, 1538, 1548, 1864
MfeI	CAATTG	2 cut(s)	125, 783
MflI	RGATCY	2 cut(s)	718, 1245
MhlI	GDGCHC	2 cut(s)	1226, 1347
MlsI	TGGCCA	1 cut(s)	224
MluNI	TGGCCA	1 cut(s)	224
MlyI	GAGTC	2 cut(s)	647, 1043
Mox20I	TGGCCA	1 cut(s)	224
MroXI	GAANNNNTTC	2 cut(s)	144, 1796
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	6 cut(s)	476, 999, 1419, 1629, 1721, 1859
MslI	CAYNNNNRTG	1 cut(s)	2022
Msp20I	TGGCCA	1 cut(s)	224
MspI	CCGG	7 cut(s)	183, 215, 234, 413, 1234, 1366, 2033
MspR9I	CCNGG	3 cut(s)	108, 432, 576
MunI	CAATTG	2 cut(s)	125, 783
Mva1269I	GAATGC	1 cut(s)	1642
MvaI	CCWGG	3 cut(s)	108, 432, 576
MvnI	CGCG	1 cut(s)	41
NdeII	GATC	7 cut(s)	718, 1054, 1245, 1426, 1538, 1548, 1864
NlaIII	CATG	7 cut(s)	365, 519, 527, 855, 869, 1299, 2021
NlaIV	GGNNCC	4 cut(s)	521, 566, 1272, 1876
NmeAIII	GCCGAG	1 cut(s)	1851
NmuCI	GTSAC	2 cut(s)	406, 2050
NspI	RCATGY	1 cut(s)	1299
PceI	AGGCCT	2 cut(s)	535, 1151
PciI	ACATGT	1 cut(s)	1295
PctI	GAATGC	1 cut(s)	1642
PdmI	GAANNNNTTC	2 cut(s)	144, 1796
PfeI	GAWTC	6 cut(s)	49, 111, 237, 374, 457, 1490
PflMI	CCANNNNNTGG	1 cut(s)	286
PfoI	TCCNGGA	1 cut(s)	106
PkrI	GCNGC	5 cut(s)	38, 399, 859, 1403, 1575
PleI	GAGTC	2 cut(s)	646, 1042
PpsI	GAGTC	2 cut(s)	646, 1042
PpuMI	RGGWCCY	1 cut(s)	1955
PscI	ACATGT	1 cut(s)	1295
Psp124BI	GAGCTC	1 cut(s)	1347
Psp5II	RGGWCCY	1 cut(s)	1955
Psp6I	CCWGG	3 cut(s)	106, 430, 574
PspGI	CCWGG	3 cut(s)	106, 430, 574
PspN4I	GGNNCC	4 cut(s)	521, 566, 1272, 1876
PspPI	GGNCC	3 cut(s)	520, 1510, 1955
PspPPI	RGGWCCY	1 cut(s)	1955
PsuI	RGATCY	2 cut(s)	718, 1245
RsaI	GTAC	4 cut(s)	582, 756, 1272, 1822
RsaNI	GTAC	4 cut(s)	581, 755, 1271, 1821
RseI	CAYNNNNRTG	1 cut(s)	2022
SacI	GAGCTC	1 cut(s)	1347
SaqAI	TTAA	6 cut(s)	476, 999, 1419, 1629, 1721, 1859
SatI	GCNGC	5 cut(s)	37, 398, 858, 1402, 1574
Sau3AI	GATC	7 cut(s)	718, 1054, 1245, 1426, 1538, 1548, 1864
Sau96I	GGNCC	3 cut(s)	520, 1510, 1955
SchI	GAGTC	2 cut(s)	647, 1043
ScrFI	CCNGG	3 cut(s)	108, 432, 576
SduI	GDGCHC	2 cut(s)	1226, 1347
SfaNI	GCATC	6 cut(s)	165, 516, 1220, 1291, 1754, 1937
SfcI	CTRYAG	2 cut(s)	603, 2043
SinI	GGWCC	2 cut(s)	1510, 1955
SmiMI	CAYNNNNRTG	1 cut(s)	2022
SmlI	CTYRAG	3 cut(s)	463, 1250, 1809
SmoI	CTYRAG	3 cut(s)	463, 1250, 1809
SseBI	AGGCCT	2 cut(s)	535, 1151
SsiI	CCGC	4 cut(s)	36, 189, 1508, 1907
SspI	AATATT	2 cut(s)	1003, 1592
SspMI	CTAG	2 cut(s)	537, 765
SstI	GAGCTC	1 cut(s)	1347
StuI	AGGCCT	2 cut(s)	535, 1151
StyD4I	CCNGG	3 cut(s)	106, 430, 574
TaaI	ACNGT	6 cut(s)	15, 946, 1284, 1451, 1825, 1843
TaiI	ACGT	1 cut(s)	756
TaqI	TCGA	5 cut(s)	197, 544, 709, 1387, 1551
TaqII	GACCGA	1 cut(s)	89
TatI	WGTACW	1 cut(s)	1820
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	6 cut(s)	49, 111, 237, 374, 457, 1490
Tru1I	TTAA	6 cut(s)	476, 999, 1419, 1629, 1721, 1859
Tru9I	TTAA	6 cut(s)	476, 999, 1419, 1629, 1721, 1859
TscAI	CASTG	2 cut(s)	1287, 1830
TseFI	GTSAC	2 cut(s)	406, 2050
TseI	GCWGC	4 cut(s)	397, 857, 1401, 1573
Tsp45I	GTSAC	2 cut(s)	406, 2050
TspGWI	ACGGA	1 cut(s)	1634
TspRI	CASTG	2 cut(s)	1287, 1830
Van91I	CCANNNNNTGG	1 cut(s)	286
VpaK11BI	GGWCC	2 cut(s)	1510, 1955
XapI	RAATTY	6 cut(s)	306, 1112, 1255, 1389, 1439, 1846
XceI	RCATGY	1 cut(s)	1299
XmiI	GTMKAC	1 cut(s)	789
XmnI	GAANNNNTTC	2 cut(s)	144, 1796
XspI	CTAG	2 cut(s)	537, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.