Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002938

Physical Location & Seq

Genomic Coordinates Forward (+)

12222204 .. 12223233

Gene Structure 1030 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017026

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCTTCCAGCATCATTGTTGAGCTGATTAATTTGCCTAATGGTGACATAGTGCTTGAACAGGAAAACTATAATTCTGGCCTCGAAACCACTGTTGACCGATTGAGCAAGTGGCTTGTACCTGGACTTTTTGCTGTTGGAATACTATGTAGGCATGATGCAGAAGCTATGTGGGCTGCCGTGGGGTATTTGGCGAATACTATGCTCGCTATGATGATCAAACGAATACTGACTCAAGAGAGACGTGCTGCCTTTGGTGTATCTGAGCTTGGAGTGCCGTCTTTGCATGCGCAATCTATCTTCTACATTGTTATATTTGCCATTTCTTCAGTTGTGCATTCTCTAGGGATAAATGTGATCACGCTGACCATGAGTGGATTTGCAGTGGCATTTAGCTCATATCTTTCATGGATTCCAGTCTCACATCGACTTCATACTCTGAGCCAAGTGATTGTGGGTGGTACCCTTGGGACCATTTTCTCCATTCTATGGTACTGGTCAGGGAATGTCGCTGTGCATGCACGAACTGTTGAGAATATTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

182

Amino Acids

19.79

Weight (kDa)

6.27

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50920 AT3G50920 AT5G66450 AT5G66450 AT5G66450 AT5G66450 AT5G66450
fragaria_vesca	FvH4_1g12790
malus_domestica	MD02G1143500.v1.1 MD15G1256700.v1.1
prunus_persica	Prupe.7G158200_v2.0.a1
pyrus_communis	pycom02g11340 pycom15g22470
rosa_chinensis	RchiOBHm_Chr2g0100911 RchiOBHm_Chr2g0100921 RchiOBHm_Chr2g0100931
rosa_laevigata	RLG00000016993 RLG00000017024 RLG00000017026
rosa_multiflora	Rmu_sc0001659.1_g000048 Rmu_sc0001862.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141740 Rroxscaffold_6G00391440
rosa_rugosa	Rorug02G0093700 Rorug02G0093800 Rorug02G0093800
rosa_samantha	Rh2AG139800 Rh2AG141300 Rh2AG141400 Rh2BG143100 Rh2BG146500 Rh2BG146600 Rh2CG147700 Rh2CG147800 Rh2DG147000 Rh2DG147100
rosa_wichuraiana	Rw2G011080 Rw2G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	291
Acc65I	GGTACC	1 cut(s)	461
AccB1I	GGYRCC	1 cut(s)	461
AccB7I	CCANNNNNTGG	1 cut(s)	489
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	3 cut(s)	120, 463, 494
AfiI	CCNNNNNNNGG	1 cut(s)	489
AgsI	TTSAA	1 cut(s)	59
AjiI	CACGTC	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	4 cut(s)	25, 167, 268, 396
AluI	AGCT	4 cut(s)	25, 167, 268, 396
Alw26I	GTCTC	2 cut(s)	235, 424
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	2 cut(s)	176, 248
AseI	ATTAAT	1 cut(s)	30
Asp718I	GGTACC	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	471
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	471
BanI	GGYRCC	1 cut(s)	461
BbvI	GCAGC	2 cut(s)	163, 235
BceAI	ACGGC	2 cut(s)	164, 262
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	1 cut(s)	123
BclI	TGATCA	2 cut(s)	216, 357
BcoDI	GTCTC	2 cut(s)	235, 424
BfaI	CTAG	1 cut(s)	344
BisI	GCNGC	2 cut(s)	177, 249
BlsI	GCNGC	2 cut(s)	178, 250
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	471
BmgBI	CACGTC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	471
BmiI	GGNNCC	2 cut(s)	463, 472
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	2 cut(s)	21, 148
BpuEI	CTTGAG	1 cut(s)	219
BsaJI	CCNNGG	2 cut(s)	180, 466
Bsc4I	CCNNNNNNNGG	1 cut(s)	489
Bse1I	ACTGG	2 cut(s)	416, 500
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	2 cut(s)	180, 466
BseLI	CCNNNNNNNGG	1 cut(s)	489
BseMII	CTCAG	2 cut(s)	255, 431
BseNI	ACTGG	2 cut(s)	416, 500
BseXI	GCAGC	2 cut(s)	163, 235
BshFI	GGCC	1 cut(s)	81
BshNI	GGYRCC	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	489
BsmAI	GTCTC	2 cut(s)	235, 424
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	484
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	216, 357
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	2 cut(s)	256, 432
BspLI	GGNNCC	2 cut(s)	463, 472
BspT107I	GGYRCC	1 cut(s)	461
BsrI	ACTGG	2 cut(s)	416, 500
BssECI	CCNNGG	2 cut(s)	180, 466
BssMI	GATC	2 cut(s)	216, 357
BssT1I	CCWWGG	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	94, 529
BstC8I	GCNNGC	3 cut(s)	207, 288, 519
BstDEI	CTNAG	2 cut(s)	264, 440
BstDSI	CCRYGG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	2 cut(s)	219, 360
BstMAI	GTCTC	2 cut(s)	235, 424
BstMBI	GATC	2 cut(s)	216, 357
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 274, 283, 518
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	2 cut(s)	290, 521
BstSCI	CCNGG	1 cut(s)	121
BstV1I	GCAGC	2 cut(s)	163, 235
BsuRI	GGCC	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	180
BtrI	CACGTC	1 cut(s)	245
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	2 cut(s)	90, 390
Cac8I	GCNNGC	3 cut(s)	207, 288, 519
CfoI	GCGC	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	471
Csp6I	GTAC	3 cut(s)	119, 462, 493
CviAII	CATG	5 cut(s)	155, 287, 370, 408, 518
CviJI	RGCY	9 cut(s)	5, 25, 81, 115, 167, 176, 268, 396, 444
CviKI_1	RGCY	9 cut(s)	5, 25, 81, 115, 167, 176, 268, 396, 444
CviQI	GTAC	3 cut(s)	119, 462, 493
DdeI	CTNAG	2 cut(s)	264, 440
DpnI	GATC	2 cut(s)	218, 359
DpnII	GATC	2 cut(s)	216, 357
Eco130I	CCWWGG	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	471
Eco57I	CTGAAG	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	466
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	5 cut(s)	158, 290, 373, 411, 521
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	5 cut(s)	154, 286, 369, 407, 517
FbaI	TGATCA	2 cut(s)	216, 357
Fnu4HI	GCNGC	2 cut(s)	177, 249
Fsp4HI	GCNGC	2 cut(s)	177, 249
FspBI	CTAG	1 cut(s)	344
FspI	TGCGCA	1 cut(s)	291
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	2 cut(s)	177, 249
HaeIII	GGCC	1 cut(s)	81
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	5 cut(s)	158, 290, 373, 411, 521
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	2 cut(s)	232, 412
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	265, 441
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	1 cut(s)	97
HpyCH4III	ACNGT	2 cut(s)	94, 529
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	6 cut(s)	161, 286, 337, 383, 517, 521
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 274, 283, 518
HpyF3I	CTNAG	2 cut(s)	264, 440
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	5 cut(s)	158, 290, 373, 411, 521
HspAI	GCGC	1 cut(s)	290
KpnI	GGTACC	1 cut(s)	465
Ksp22I	TGATCA	2 cut(s)	216, 357
Kzo9I	GATC	2 cut(s)	216, 357
LpnPI	CCDG	8 cut(s)	22, 47, 63, 108, 135, 429, 481, 486
Lsp1109I	GCAGC	2 cut(s)	163, 235
LweI	GCATC	2 cut(s)	21, 148
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	2 cut(s)	218, 359
MboI	GATC	2 cut(s)	216, 357
MboII	GAAGA	2 cut(s)	292, 318
MluCI	AATT	2 cut(s)	31, 73
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	1 cut(s)	92
MseI	TTAA	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	4 cut(s)	173, 274, 283, 518
NdeII	GATC	2 cut(s)	216, 357
NlaIII	CATG	5 cut(s)	158, 290, 373, 411, 521
NlaIV	GGNNCC	2 cut(s)	463, 472
NmuCI	GTSAC	1 cut(s)	44
NsbI	TGCGCA	1 cut(s)	291
NspI	RCATGY	2 cut(s)	290, 521
PaeI	GCATGC	2 cut(s)	290, 521
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	412
PflMI	CCANNNNNTGG	1 cut(s)	489
PkrI	GCNGC	2 cut(s)	178, 250
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PshBI	ATTAAT	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	463, 472
PspPI	GGNCC	1 cut(s)	471
RsaI	GTAC	3 cut(s)	120, 463, 494
RsaNI	GTAC	3 cut(s)	119, 462, 493
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	2 cut(s)	177, 249
Sau3AI	GATC	2 cut(s)	216, 357
Sau96I	GGNCC	1 cut(s)	471
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	6 cut(s)	27, 124, 169, 247, 270, 398
SfaNI	GCATC	2 cut(s)	21, 148
SinI	GGWCC	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
SphI	GCATGC	2 cut(s)	290, 521
Sse9I	AATT	2 cut(s)	31, 73
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	1 cut(s)	344
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	2 cut(s)	94, 529
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	84, 427
TaqII	GACCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	31, 73
TfiI	GAWTC	1 cut(s)	412
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	2 cut(s)	97, 390
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	2 cut(s)	176, 248
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	396, 422
TspRI	CASTG	2 cut(s)	97, 390
Van91I	CCANNNNNTGG	1 cut(s)	489
VpaK11BI	GGWCC	1 cut(s)	471
VspI	ATTAAT	1 cut(s)	30
XceI	RCATGY	2 cut(s)	290, 521
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.