Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002938

Physical Location & Seq

Genomic Coordinates Reverse (-)

18922304 .. 18923772

Gene Structure 1469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G50920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCAGCGTCGTCTTCTCTTCTTCTTCTTCTTCACTGTCCCACCTGCAATTTCTACTTTGACTCTTCCTCGTACCTTAAAAGATCGAGACTTTCGAGCTATAGTTCGATTATCTCTCGTGGGTCTCCTTTGTTTGTCTCTAGCTTTGGATCTATGACCGTTAAAAGATTCTCTAGCAGAGTCGGAAGCAGGAGCAATGACGGTAACGAACAATTTGGAGCGTTGGAGCAAGAATCTTTCATCAACAACTCATCGGAGATACGGAAAGACTTGGTCACCGGCGGTGGGATTGAAGCCATTGTTAATCGTCTGAGCAAATGGGTTGTGTCTGTTCTATTTGGTTCAATCATTCTTTTGCGACATGATGGTGCAGCCTTGTGGGCAGTCATTGGATCGATTTCGAATTCTGCTCTCTCTGTAGTTCTTAAACGTATACTTAACCAAGAGAGGCCTACTACAACATTGCGATCTGATCCCGGGATGCCATCTTCTCATGCTCAATCCATTTCTTTCATATCTGTCTTTGCTGTTTTATCCGTTATGGAATGGCTTGGAACCAACGGTGTGTCTTTGTTTCTTAGCGGCTTAATCCTCGCATTGGGTTCATACTTTATACGGTTAAGGGTTTCTCAAAAACTGCACACAAGCAGTCAAGTGGTGGTGGGTGCCATTGTTGGTTCTCTTTTCTGCATCTTATGGTACACAATGTGGAATTCGCTTCTTCGTGAAGCCTTCGAGGCATCTCTATTAGTGCAAATATCTGTATTTCTGTTTGCAGCTACATTTGCGCTAGCTTTCGCAGCGTACGTTGTACTTAACTGGTTCAAAGACGAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

279

Amino Acids

30.59

Weight (kDa)

9.58

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	126 - 238	1.8e-07	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50920 AT3G50920 AT5G66450 AT5G66450 AT5G66450 AT5G66450 AT5G66450
fragaria_vesca	FvH4_1g12790
malus_domestica	MD02G1143500.v1.1 MD15G1256700.v1.1
prunus_persica	Prupe.7G158200_v2.0.a1
pyrus_communis	pycom02g11340 pycom15g22470
rosa_chinensis	RchiOBHm_Chr2g0100911 RchiOBHm_Chr2g0100921 RchiOBHm_Chr2g0100931
rosa_laevigata	RLG00000016993 RLG00000017024 RLG00000017026
rosa_multiflora	Rmu_sc0001659.1_g000048 Rmu_sc0001862.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141740 Rroxscaffold_6G00391440
rosa_rugosa	Rorug02G0093700 Rorug02G0093800 Rorug02G0093800
rosa_samantha	Rh2AG139800 Rh2AG141300 Rh2AG141400 Rh2BG143100 Rh2BG146500 Rh2BG146600 Rh2CG147700 Rh2CG147800 Rh2DG147000 Rh2DG147100
rosa_wichuraiana	Rw2G011080 Rw2G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	53
Acc36I	ACCTGC	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	665
AccI	GTMKAC	1 cut(s)	433
AciI	CCGC	2 cut(s)	282, 582
AclWI	GGATC	3 cut(s)	157, 400, 467
AcsI	RAATTY	2 cut(s)	403, 712
AdeI	CACNNNGTG	1 cut(s)	708
AfaI	GTAC	4 cut(s)	74, 701, 806, 813
AfiI	CCNNNNNNNGG	2 cut(s)	285, 598
AgsI	TTSAA	3 cut(s)	293, 345, 826
AluBI	AGCT	4 cut(s)	99, 144, 779, 794
AluI	AGCT	4 cut(s)	99, 144, 779, 794
Alw26I	GTCTC	3 cut(s)	82, 129, 142
AlwI	GGATC	3 cut(s)	157, 400, 467
Ama87I	CYCGRG	1 cut(s)	476
AoxI	GGCC	1 cut(s)	449
ApeKI	GCWGC	4 cut(s)	5, 371, 776, 800
ApoI	RAATTY	2 cut(s)	403, 712
AspLEI	GCGC	1 cut(s)	790
AsuC2I	CCSGG	2 cut(s)	477, 478
AsuHPI	GGTGA	1 cut(s)	268
AsuII	TTCGAA	1 cut(s)	401
AsuNHI	GCTAGC	1 cut(s)	790
AvaI	CYCGRG	1 cut(s)	476
BanI	GGYRCC	1 cut(s)	665
BauI	CACGAG	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	6
BbvI	GCAGC	4 cut(s)	17, 383, 788, 812
BccI	CCATC	2 cut(s)	359, 493
BcnI	CCSGG	2 cut(s)	477, 478
BcoDI	GTCTC	3 cut(s)	82, 129, 142
BfaI	CTAG	3 cut(s)	141, 174, 791
BfmI	CTRYAG	2 cut(s)	100, 417
BfuAI	ACCTGC	1 cut(s)	53
BglI	GCCNNNNNGGC	2 cut(s)	380, 737
BisI	GCNGC	5 cut(s)	6, 372, 583, 777, 801
BlsI	GCNGC	5 cut(s)	7, 373, 584, 778, 802
Bme1390I	CCNGG	2 cut(s)	477, 478
BmeT110I	CYCGRG	1 cut(s)	476
BmiI	GGNNCC	2 cut(s)	556, 667
BmrFI	CCNGG	2 cut(s)	477, 478
BmsI	GCATC	3 cut(s)	471, 699, 749
BmtI	GCTAGC	1 cut(s)	794
BpiI	GAAGAC	1 cut(s)	6
Bpu14I	TTCGAA	1 cut(s)	401
BpuMI	CCSGG	2 cut(s)	477, 478
Bsa29I	ATCGAT	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	476
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 598
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	824
Bse3DI	GCAATG	2 cut(s)	202, 461
BseCI	ATCGAT	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	476
BseGI	GGATG	1 cut(s)	486
BseLI	CCNNNNNNNGG	2 cut(s)	285, 598
BseMI	GCAATG	2 cut(s)	202, 461
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	824
BseXI	GCAGC	4 cut(s)	17, 383, 788, 812
BsgI	GTGCAG	2 cut(s)	390, 623
BshFI	GGCC	1 cut(s)	451
BshNI	GGYRCC	1 cut(s)	665
BshVI	ATCGAT	1 cut(s)	395
BsiHKCI	CYCGRG	1 cut(s)	476
BsiSI	CCGG	2 cut(s)	279, 477
BsiWI	CGTACG	1 cut(s)	804
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	285, 598
BsmAI	GTCTC	3 cut(s)	82, 129, 142
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	451
Bso31I	GGTCTC	1 cut(s)	129
BsoBI	CYCGRG	1 cut(s)	476
Bsp119I	TTCGAA	1 cut(s)	401
Bsp143I	GATC	5 cut(s)	83, 149, 392, 467, 472
BspACI	CCGC	2 cut(s)	282, 582
BspANI	GGCC	1 cut(s)	451
BspCNI	CTCAG	1 cut(s)	303
BspDI	ATCGAT	1 cut(s)	395
BspLI	GGNNCC	2 cut(s)	556, 667
BspMI	ACCTGC	1 cut(s)	53
BspOI	GCTAGC	1 cut(s)	794
BspPI	GGATC	3 cut(s)	157, 400, 467
BspT104I	TTCGAA	1 cut(s)	401
BspT107I	GGYRCC	1 cut(s)	665
BspTNI	GGTCTC	1 cut(s)	129
BsrDI	GCAATG	2 cut(s)	202, 461
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	824
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	476
BssMI	GATC	5 cut(s)	83, 149, 392, 467, 472
BssNAI	GTATAC	1 cut(s)	434
BssSI	CACGAG	1 cut(s)	117
Bst1107I	GTATAC	1 cut(s)	434
Bst2BI	CACGAG	1 cut(s)	117
Bst4CI	ACNGT	5 cut(s)	38, 160, 203, 563, 618
Bst6I	CTCTTC	2 cut(s)	24, 70
BstBI	TTCGAA	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	792
BstDEI	CTNAG	2 cut(s)	311, 578
BstEII	GGTNACC	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	486
BstHHI	GCGC	1 cut(s)	790
BstKTI	GATC	5 cut(s)	86, 152, 395, 470, 475
BstMAI	GTCTC	3 cut(s)	82, 129, 142
BstMBI	GATC	5 cut(s)	83, 149, 392, 467, 472
BstMWI	GCNNNNNNNGC	4 cut(s)	380, 737, 785, 800
BstPI	GGTNACC	1 cut(s)	274
BstSCI	CCNGG	2 cut(s)	475, 476
BstSFI	CTRYAG	2 cut(s)	100, 417
BstV1I	GCAGC	4 cut(s)	17, 383, 788, 812
BstV2I	GAAGAC	1 cut(s)	6
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BstZ17I	GTATAC	1 cut(s)	434
Bsu15I	ATCGAT	1 cut(s)	395
BsuRI	GGCC	1 cut(s)	451
BsuTUI	ATCGAT	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	34
BveI	ACCTGC	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	792
CfoI	GCGC	1 cut(s)	790
Cfr10I	RCCGGY	1 cut(s)	278
Cfr9I	CCCGGG	1 cut(s)	476
ClaI	ATCGAT	1 cut(s)	395
Csp6I	GTAC	4 cut(s)	73, 700, 805, 812
CviAII	CATG	2 cut(s)	362, 494
CviQI	GTAC	4 cut(s)	73, 700, 805, 812
DdeI	CTNAG	2 cut(s)	311, 578
DpnI	GATC	5 cut(s)	85, 151, 394, 469, 474
DpnII	GATC	5 cut(s)	83, 149, 392, 467, 472
DraIII	CACNNNGTG	1 cut(s)	708
Eam1104I	CTCTTC	2 cut(s)	24, 70
EarI	CTCTTC	2 cut(s)	24, 70
Eco147I	AGGCCT	1 cut(s)	451
Eco31I	GGTCTC	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	476
Eco91I	GGTNACC	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	274
EcoRI	GAATTC	2 cut(s)	403, 712
FaeI	CATG	2 cut(s)	365, 497
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	2 cut(s)	361, 493
FblI	GTMKAC	1 cut(s)	433
Fnu4HI	GCNGC	5 cut(s)	6, 372, 583, 777, 801
FokI	GGATG	1 cut(s)	493
Fsp4HI	GCNGC	5 cut(s)	6, 372, 583, 777, 801
FspBI	CTAG	3 cut(s)	141, 174, 791
GlaI	GCGC	1 cut(s)	789
GluI	GCNGC	5 cut(s)	6, 372, 583, 777, 801
HaeIII	GGCC	1 cut(s)	451
HapII	CCGG	2 cut(s)	279, 477
HhaI	GCGC	1 cut(s)	790
Hin1II	CATG	2 cut(s)	365, 497
Hin6I	GCGC	1 cut(s)	788
HinP1I	GCGC	1 cut(s)	788
HinfI	GANTC	4 cut(s)	62, 168, 180, 233
HpaII	CCGG	2 cut(s)	279, 477
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	2 cut(s)	434, 702
Hpy188I	TCNGA	4 cut(s)	185, 256, 312, 472
Hpy188III	TCNNGA	2 cut(s)	87, 725
Hpy8I	GTNNAC	2 cut(s)	434, 702
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	742
HpyCH4III	ACNGT	5 cut(s)	38, 160, 203, 563, 618
HpyCH4IV	ACGT	2 cut(s)	430, 807
HpyCH4V	TGCA	6 cut(s)	48, 371, 640, 690, 754, 776
HpyF10VI	GCNNNNNNNGC	4 cut(s)	380, 737, 785, 800
HpyF3I	CTNAG	2 cut(s)	311, 578
HpySE526I	ACGT	2 cut(s)	430, 807
Hsp92II	CATG	2 cut(s)	365, 497
HspAI	GCGC	1 cut(s)	788
Kzo9I	GATC	5 cut(s)	83, 149, 392, 467, 472
LmnI	GCTCC	3 cut(s)	192, 218, 226
LpnPI	CCDG	5 cut(s)	58, 175, 292, 490, 805
Lsp1109I	GCAGC	4 cut(s)	17, 383, 788, 812
LweI	GCATC	3 cut(s)	471, 699, 749
MaeI	CTAG	3 cut(s)	141, 174, 791
MaeII	ACGT	2 cut(s)	430, 807
MaeIII	GTNAC	2 cut(s)	203, 274
MalI	GATC	5 cut(s)	85, 151, 394, 469, 474
MboI	GATC	5 cut(s)	83, 149, 392, 467, 472
MboII	GAAGA	9 cut(s)	6, 11, 14, 17, 20, 23, 57, 480, 713
MflI	RGATCY	1 cut(s)	149
MluCI	AATT	4 cut(s)	49, 212, 403, 712
MlyI	GAGTC	2 cut(s)	56, 189
MmeI	TCCRAC	2 cut(s)	163, 204
MnlI	CCTC	4 cut(s)	79, 441, 602, 730
MseI	TTAA	8 cut(s)	78, 162, 303, 426, 438, 587, 620, 816
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	2 cut(s)	279, 477
MspR9I	CCNGG	2 cut(s)	477, 478
MwoI	GCNNNNNNNGC	4 cut(s)	380, 737, 785, 800
NciI	CCSGG	2 cut(s)	477, 478
NdeII	GATC	5 cut(s)	83, 149, 392, 467, 472
NheI	GCTAGC	1 cut(s)	790
NlaIII	CATG	2 cut(s)	365, 497
NlaIV	GGNNCC	2 cut(s)	556, 667
NmuCI	GTSAC	1 cut(s)	274
NspV	TTCGAA	1 cut(s)	401
PaqCI	CACCTGC	1 cut(s)	53
PceI	AGGCCT	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	2 cut(s)	92, 804
PfeI	GAWTC	2 cut(s)	168, 233
Pfl23II	CGTACG	1 cut(s)	804
PflFI	GACNNNGTC	1 cut(s)	272
PkrI	GCNGC	5 cut(s)	7, 373, 584, 778, 802
PleI	GAGTC	2 cut(s)	56, 188
PpsI	GAGTC	2 cut(s)	56, 188
PspEI	GGTNACC	1 cut(s)	274
PspLI	CGTACG	1 cut(s)	804
PspN4I	GGNNCC	2 cut(s)	556, 667
PsuI	RGATCY	1 cut(s)	149
PsyI	GACNNNGTC	1 cut(s)	272
RsaI	GTAC	4 cut(s)	74, 701, 806, 813
RsaNI	GTAC	4 cut(s)	73, 700, 805, 812
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	8 cut(s)	78, 162, 303, 426, 438, 587, 620, 816
SatI	GCNGC	5 cut(s)	6, 372, 583, 777, 801
Sau3AI	GATC	5 cut(s)	83, 149, 392, 467, 472
SchI	GAGTC	2 cut(s)	56, 189
ScrFI	CCNGG	2 cut(s)	477, 478
SetI	ASST	8 cut(s)	47, 78, 101, 146, 433, 781, 796, 810
SfaNI	GCATC	3 cut(s)	471, 699, 749
SfcI	CTRYAG	2 cut(s)	100, 417
SfuI	TTCGAA	1 cut(s)	401
SgrAI	CRCCGGYG	1 cut(s)	278
SmaI	CCCGGG	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	366
Sse9I	AATT	4 cut(s)	49, 212, 403, 712
SseBI	AGGCCT	1 cut(s)	451
SsiI	CCGC	2 cut(s)	282, 582
SspMI	CTAG	3 cut(s)	141, 174, 791
StuI	AGGCCT	1 cut(s)	451
StyD4I	CCNGG	2 cut(s)	475, 476
TaaI	ACNGT	5 cut(s)	38, 160, 203, 563, 618
TaiI	ACGT	2 cut(s)	433, 810
TaqI	TCGA	6 cut(s)	86, 95, 107, 395, 401, 735
TasI	AATT	4 cut(s)	49, 212, 403, 712
TatI	WGTACW	1 cut(s)	811
TauI	GCSGC	1 cut(s)	585
TfiI	GAWTC	2 cut(s)	168, 233
Tru1I	TTAA	8 cut(s)	78, 162, 303, 426, 438, 587, 620, 816
Tru9I	TTAA	8 cut(s)	78, 162, 303, 426, 438, 587, 620, 816
TscAI	CASTG	1 cut(s)	41
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	4 cut(s)	5, 371, 776, 800
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	3 cut(s)	229, 502, 594
TspGWI	ACGGA	2 cut(s)	277, 526
TspMI	CCCGGG	1 cut(s)	476
TspRI	CASTG	1 cut(s)	41
Tth111I	GACNNNGTC	1 cut(s)	272
XapI	RAATTY	2 cut(s)	403, 712
XmaI	CCCGGG	1 cut(s)	476
XmiI	GTMKAC	1 cut(s)	433
XspI	CTAG	3 cut(s)	141, 174, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.