Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002938

Physical Location & Seq

Genomic Coordinates Forward (+)

11927230 .. 11929979

Gene Structure 2750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1143500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCCATCATCAGCAGCCACCAATTTTTTCCACCACCCAAACCTCAGAATCTTCCCCCGCCGTTCTTATCGGCTCAAATATCTGAAACCCATTTCTTCTTTTCCCAGATTTCGCGCCAAAAAACTGGATTTCTCAGGTGGATTCGTCCCCAAGAAAGCTGTTTCGGGGCGGAGGAGCAGAGTCATGGCTTCGAATTCCATGGTTGAGCTGATAAAGATGCTGCCTTCTCGAAACGCCGACGGCGAAGACAGCGGCGGAGAGATTCAGCCTGAAGATTATATTGATGGTCCTTCAGAGTTGAGTCCTTTGATTGTGGATAATGGGTTGGAATCGAAACTCAATCGACTGAGCAAGTGGATTATATCTGCCCTTTTTGCTGTGGTGATTCTGTGGAGGCATGATGGAGAAGCCCTGTGGGCTGCAATGGGGTCTGTTGCAAATTCAATCCTATCTGTTATACTCAAAAGGATACTGAACCAGGAGAGGCCAATTCCGTCGTTGAGATCGGAGCCCGGAATGCCTTCTTCCCACGCGCAATCCATCTTCTACGTTGTTACGTTCACTATTTGGTCAATTGTGGAATGGCTAGGGGTAAATGTAATTTCCATCTCCGTCGGAGCGTTTGCCTTAGCGTTTGGTACATATTTTACATGGTTACGAGTCTCGCAAAAGCTTCATACGCTTAGCCAAGTCATTGTGGGTGCTGCGTTCGGAACCATTTTCTCCATCTTTTGGTTCTGGTCATGGAATGCTTTTGTGCAGAAAGCGTTTGTTACCACTTTATGGGTTCAAATAGTTGTAGTTTTGGGGGCTGCTGGATTTTGCCTAGGATTTCTTGTGCATGTAATTCGTAATTGGTTTAGGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

290

Amino Acids

32.44

Weight (kDa)

10.24

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	156 - 250	6.7e-07	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50920 AT3G50920 AT5G66450 AT5G66450 AT5G66450 AT5G66450 AT5G66450
fragaria_vesca	FvH4_1g12790
malus_domestica	MD02G1143500.v1.1 MD15G1256700.v1.1
prunus_persica	Prupe.7G158200_v2.0.a1
pyrus_communis	pycom02g11340 pycom15g22470
rosa_chinensis	RchiOBHm_Chr2g0100911 RchiOBHm_Chr2g0100921 RchiOBHm_Chr2g0100931
rosa_laevigata	RLG00000016993 RLG00000017024 RLG00000017026
rosa_multiflora	Rmu_sc0001659.1_g000048 Rmu_sc0001862.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141740 Rroxscaffold_6G00391440
rosa_rugosa	Rorug02G0093700 Rorug02G0093800 Rorug02G0093800
rosa_samantha	Rh2AG139800 Rh2AG141300 Rh2AG141400 Rh2BG143100 Rh2BG146500 Rh2BG146600 Rh2CG147700 Rh2CG147800 Rh2DG147000 Rh2DG147100
rosa_wichuraiana	Rw2G011080 Rw2G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	732, 783
AccII	CGCG	2 cut(s)	114, 533
AciI	CCGC	4 cut(s)	58, 169, 252, 255
AcsI	RAATTY	2 cut(s)	193, 439
AcuI	CTGAAG	2 cut(s)	276, 291
AfaI	GTAC	1 cut(s)	640
AfiI	CCNNNNNNNGG	2 cut(s)	732, 783
AgsI	TTSAA	2 cut(s)	444, 791
AjnI	CCWGG	1 cut(s)	477
AluBI	AGCT	3 cut(s)	158, 208, 673
AluI	AGCT	3 cut(s)	158, 208, 673
Alw26I	GTCTC	1 cut(s)	667
AoxI	GGCC	1 cut(s)	485
ApeKI	GCWGC	5 cut(s)	14, 220, 419, 704, 812
ApoI	RAATTY	2 cut(s)	193, 439
Asp700I	GAANNNNTTC	1 cut(s)	520
AspA2I	CCTAGG	1 cut(s)	826
AspLEI	GCGC	2 cut(s)	116, 535
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	1 cut(s)	394
AsuII	TTCGAA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	287
AvrII	CCTAGG	1 cut(s)	826
BanII	GRGCYC	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	252
BbvI	GCAGC	5 cut(s)	26, 207, 406, 691, 799
BccI	CCATC	6 cut(s)	13, 278, 395, 548, 614, 734
BceAI	ACGGC	2 cut(s)	45, 256
BcgI	CGANNNNNNTGC	2 cut(s)	830, 864
BciT130I	CCWGG	1 cut(s)	479
BciVI	GTATCC	1 cut(s)	462
BcnI	CCSGG	1 cut(s)	513
BcoDI	GTCTC	1 cut(s)	667
BfaI	CTAG	2 cut(s)	587, 827
BfuI	GTATCC	1 cut(s)	462
BglI	GCCNNNNNGGC	1 cut(s)	416
BisI	GCNGC	6 cut(s)	15, 221, 253, 420, 705, 813
BlnI	CCTAGG	1 cut(s)	826
BlpI	GCTNAGC	1 cut(s)	683
BlsI	GCNGC	6 cut(s)	16, 222, 254, 421, 706, 814
Bme1390I	CCNGG	2 cut(s)	479, 513
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	2 cut(s)	510, 715
BmrFI	CCNGG	2 cut(s)	479, 513
BmsI	GCATC	1 cut(s)	207
BpiI	GAAGAC	1 cut(s)	252
Bpu10I	CCTNAGC	1 cut(s)	628
Bpu1102I	GCTNAGC	1 cut(s)	683
Bpu14I	TTCGAA	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	513
BsaJI	CCNNGG	2 cut(s)	198, 826
Bsc4I	CCNNNNNNNGG	2 cut(s)	732, 783
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	2 cut(s)	198, 826
BseLI	CCNNNNNNNGG	2 cut(s)	732, 783
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	3 cut(s)	58, 147, 338
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	187
BseXI	GCAGC	5 cut(s)	26, 207, 406, 691, 799
BsgI	GTGCAG	1 cut(s)	779
Bsh1236I	CGCG	2 cut(s)	114, 533
BshFI	GGCC	1 cut(s)	487
BsiSI	CCGG	1 cut(s)	513
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	732, 783
BsmAI	GTCTC	1 cut(s)	667
BsmFI	GGGAC	1 cut(s)	131
BsmI	GAATGC	2 cut(s)	522, 754
BsnI	GGCC	1 cut(s)	487
Bsp119I	TTCGAA	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	1 cut(s)	503
Bsp1720I	GCTNAGC	1 cut(s)	683
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	4 cut(s)	58, 169, 252, 255
BspANI	GGCC	1 cut(s)	487
BspCNI	CTCAG	3 cut(s)	57, 146, 339
BspFNI	CGCG	2 cut(s)	114, 533
BspLI	GGNNCC	2 cut(s)	510, 715
BspT104I	TTCGAA	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	198, 826
BssMI	GATC	1 cut(s)	503
BssT1I	CCWWGG	2 cut(s)	198, 826
Bst2UI	CCWGG	1 cut(s)	479
BstBI	TTCGAA	1 cut(s)	191
BstDEI	CTNAG	6 cut(s)	44, 133, 347, 628, 683, 867
BstDSI	CCRYGG	1 cut(s)	198
BstFNI	CGCG	2 cut(s)	114, 533
BstHHI	GCGC	2 cut(s)	116, 535
BstKTI	GATC	1 cut(s)	506
BstMAI	GTCTC	1 cut(s)	667
BstMBI	GATC	1 cut(s)	503
BstMWI	GCNNNNNNNGC	5 cut(s)	249, 374, 416, 517, 679
BstNI	CCWGG	1 cut(s)	479
BstNSI	RCATGY	1 cut(s)	845
BstSCI	CCNGG	2 cut(s)	477, 511
BstUI	CGCG	2 cut(s)	114, 533
BstV1I	GCAGC	5 cut(s)	26, 207, 406, 691, 799
BstV2I	GAAGAC	1 cut(s)	252
BstXI	CCANNNNNNTGG	1 cut(s)	124
BsuI	GTATCC	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	487
BtgI	CCRYGG	1 cut(s)	198
CfoI	GCGC	2 cut(s)	116, 535
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	639
CviAII	CATG	6 cut(s)	184, 199, 398, 651, 744, 842
CviQI	GTAC	1 cut(s)	639
DdeI	CTNAG	6 cut(s)	44, 133, 347, 628, 683, 867
DpnI	GATC	1 cut(s)	505
DpnII	GATC	1 cut(s)	503
EciI	GGCGGA	2 cut(s)	184, 270
Eco130I	CCWWGG	2 cut(s)	198, 826
Eco24I	GRGCYC	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	287
Eco57I	CTGAAG	2 cut(s)	276, 291
EcoRI	GAATTC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	477
EcoT14I	CCWWGG	2 cut(s)	198, 826
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	2 cut(s)	198, 826
FaeI	CATG	6 cut(s)	187, 202, 401, 654, 747, 845
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	6 cut(s)	183, 198, 397, 650, 743, 841
FauI	CCCGC	1 cut(s)	65
Fnu4HI	GCNGC	6 cut(s)	15, 221, 253, 420, 705, 813
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	6 cut(s)	15, 221, 253, 420, 705, 813
FspBI	CTAG	2 cut(s)	587, 827
GlaI	GCGC	2 cut(s)	115, 534
GluI	GCNGC	6 cut(s)	15, 221, 253, 420, 705, 813
HaeIII	GGCC	1 cut(s)	487
HapII	CCGG	1 cut(s)	513
HhaI	GCGC	2 cut(s)	116, 535
Hin1II	CATG	6 cut(s)	187, 202, 401, 654, 747, 845
Hin6I	GCGC	2 cut(s)	114, 533
HinP1I	GCGC	2 cut(s)	114, 533
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	8 cut(s)	48, 141, 180, 262, 301, 329, 385, 660
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	1 cut(s)	561
Hpy188I	TCNGA	6 cut(s)	47, 84, 295, 508, 617, 713
Hpy188III	TCNNGA	1 cut(s)	228
Hpy8I	GTNNAC	1 cut(s)	561
Hpy99I	CGWCG	3 cut(s)	242, 499, 617
HpyAV	CCTTC	3 cut(s)	234, 300, 531
HpyCH4IV	ACGT	2 cut(s)	549, 557
HpyCH4V	TGCA	4 cut(s)	422, 437, 760, 841
HpyF10VI	GCNNNNNNNGC	5 cut(s)	249, 374, 416, 517, 679
HpyF3I	CTNAG	6 cut(s)	44, 133, 347, 628, 683, 867
HpySE526I	ACGT	2 cut(s)	549, 557
Hsp92II	CATG	6 cut(s)	187, 202, 401, 654, 747, 845
HspAI	GCGC	2 cut(s)	114, 533
Kzo9I	GATC	1 cut(s)	503
LmnI	GCTCC	3 cut(s)	174, 508, 617
Lsp1109I	GCAGC	5 cut(s)	26, 207, 406, 691, 799
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	2 cut(s)	587, 827
MaeII	ACGT	2 cut(s)	549, 557
MaeIII	GTNAC	3 cut(s)	553, 654, 772
MalI	GATC	1 cut(s)	505
MboI	GATC	1 cut(s)	503
MboII	GAAGA	6 cut(s)	43, 87, 257, 284, 516, 535
MfeI	CAATTG	1 cut(s)	573
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	8 cut(s)	22, 193, 439, 489, 573, 600, 846, 853
MlyI	GAGTC	3 cut(s)	189, 310, 669
MmeI	TCCRAC	2 cut(s)	306, 595
MnlI	CCTC	4 cut(s)	53, 165, 387, 477
MroXI	GAANNNNTTC	1 cut(s)	520
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	1 cut(s)	513
MspR9I	CCNGG	2 cut(s)	479, 513
MunI	CAATTG	1 cut(s)	573
Mva1269I	GAATGC	2 cut(s)	522, 754
MvaI	CCWGG	1 cut(s)	479
MvnI	CGCG	2 cut(s)	114, 533
MwoI	GCNNNNNNNGC	5 cut(s)	249, 374, 416, 517, 679
NciI	CCSGG	1 cut(s)	513
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	1 cut(s)	503
NlaIII	CATG	6 cut(s)	187, 202, 401, 654, 747, 845
NlaIV	GGNNCC	2 cut(s)	510, 715
NspI	RCATGY	1 cut(s)	845
NspV	TTCGAA	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PctI	GAATGC	2 cut(s)	522, 754
PdmI	GAANNNNTTC	1 cut(s)	520
PfeI	GAWTC	5 cut(s)	48, 141, 262, 329, 385
PflMI	CCANNNNNTGG	2 cut(s)	732, 783
PkrI	GCNGC	6 cut(s)	16, 222, 254, 421, 706, 814
PleI	GAGTC	3 cut(s)	188, 309, 668
PpsI	GAGTC	3 cut(s)	188, 309, 668
Psp6I	CCWGG	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	2 cut(s)	510, 715
PspPI	GGNCC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	640
RsaNI	GTAC	1 cut(s)	639
SatI	GCNGC	6 cut(s)	15, 221, 253, 420, 705, 813
Sau3AI	GATC	1 cut(s)	503
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	3 cut(s)	189, 310, 669
ScrFI	CCNGG	2 cut(s)	479, 513
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	7 cut(s)	45, 139, 160, 210, 552, 560, 675
SfaNI	GCATC	1 cut(s)	207
SfuI	TTCGAA	1 cut(s)	191
SinI	GGWCC	1 cut(s)	287
Sse9I	AATT	8 cut(s)	22, 193, 439, 489, 573, 600, 846, 853
SsiI	CCGC	4 cut(s)	58, 169, 252, 255
SspMI	CTAG	2 cut(s)	587, 827
StyD4I	CCNGG	2 cut(s)	477, 511
StyI	CCWWGG	2 cut(s)	198, 826
TaiI	ACGT	2 cut(s)	552, 560
TaqI	TCGA	4 cut(s)	191, 229, 332, 343
TasI	AATT	8 cut(s)	22, 193, 439, 489, 573, 600, 846, 853
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	5 cut(s)	48, 141, 262, 329, 385
TseI	GCWGC	5 cut(s)	14, 220, 419, 704, 812
TspDTI	ATGAA	1 cut(s)	665
TspGWI	ACGGA	2 cut(s)	483, 601
Van91I	CCANNNNNTGG	2 cut(s)	732, 783
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	2 cut(s)	193, 439
XceI	RCATGY	1 cut(s)	845
XmaJI	CCTAGG	1 cut(s)	826
XmnI	GAANNNNTTC	1 cut(s)	520
XspI	CTAG	2 cut(s)	587, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.