Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002938

Physical Location & Seq

Genomic Coordinates Forward (+)

21850382 .. 21852924

Gene Structure 2543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1256700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCCACCATCAGCAGCCACCAATTTCTTCCACCACCCAAATCTCAGAATCTTCCACCGCCGTTCTTGTTGGCTCAAATCTCTGAAACCCATTTCTTTTCCCAGAATTCCCATCAAAAAACTGGATTCATCAGGTGGGTTTGTTCCAAAGAAAGCTGTTTCAGGGCAGAGGAGCAGAGTCATGGGTTCCAACTCCATGGTTGAGCTGATAAAGATGCTGCCTTTTCGAAACGCCGATGGCGAAGACGGCGGCGGAGAGCTTCATCGTGAAGATTACATTGATGGGACTTCGGAGTTGAGTCCTTTGGTTGTGGATAATGGGTTGGAATCGAAGCTCAATCGACTGAGCAAGTGGATAATATCTGCTTTATTTGCTGTGGTGATTCTATGGAGGCATGACGGAGAAGCCATATGGGCTGCAATGGGGTCTGTTGTAAATTCAATCCTATCTGTTATACTCAAAAGGATACTGAACCAGGAGAGGCCAATTCCGTCGTTGAGAGCTGAGCCCGGAATGCCTTCTTCCCACGCACAATCCATCTTCTACATTGTTACGTTCACTATTTGGTCAATTGTGGAATGGCTAGGGATGAATGAGATTTCTCTGACTGTCACTGCATTTGCCTTGGCGTTTGGTACATATTTTTCGTGGTTACGAGTCTCACAAAAACTTCATACACTCAGTCAAATTGTTGTGGGTGCTGCATTCGGAACTATTTTCGCCATCTTTTGGTTCTGGACATGGAATGCTTTTGTGGAGAAAGCATTTGTTTCGTCTTTATGGGTTCAAATAGTTGTATCTGTGGGGGCTGCTGGATTTTGTCTAGGATTTGTTGTGCATGTAATTCGTTATTGGCTCAAGGATGAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

291

Amino Acids

32.61

Weight (kDa)

9.66

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	167 - 249	3.9e-08	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50920 AT3G50920 AT5G66450 AT5G66450 AT5G66450 AT5G66450 AT5G66450
fragaria_vesca	FvH4_1g12790
malus_domestica	MD02G1143500.v1.1 MD15G1256700.v1.1
prunus_persica	Prupe.7G158200_v2.0.a1
pyrus_communis	pycom02g11340 pycom15g22470
rosa_chinensis	RchiOBHm_Chr2g0100911 RchiOBHm_Chr2g0100921 RchiOBHm_Chr2g0100931
rosa_laevigata	RLG00000016993 RLG00000017024 RLG00000017026
rosa_multiflora	Rmu_sc0001659.1_g000048 Rmu_sc0001862.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141740 Rroxscaffold_6G00391440
rosa_rugosa	Rorug02G0093700 Rorug02G0093800 Rorug02G0093800
rosa_samantha	Rh2AG139800 Rh2AG141300 Rh2AG141400 Rh2BG143100 Rh2BG146500 Rh2BG146600 Rh2CG147700 Rh2CG147800 Rh2DG147000 Rh2DG147100
rosa_wichuraiana	Rw2G011080 Rw2G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	729
AciI	CCGC	3 cut(s)	58, 249, 252
AcsI	RAATTY	2 cut(s)	105, 436
AfaI	GTAC	1 cut(s)	637
AfiI	CCNNNNNNNGG	1 cut(s)	729
AgsI	TTSAA	2 cut(s)	441, 788
AjnI	CCWGG	1 cut(s)	474
AluBI	AGCT	5 cut(s)	155, 205, 259, 334, 503
AluI	AGCT	5 cut(s)	155, 205, 259, 334, 503
Alw26I	GTCTC	1 cut(s)	664
AoxI	GGCC	1 cut(s)	482
ApeKI	GCWGC	5 cut(s)	14, 217, 416, 701, 809
ApoI	RAATTY	2 cut(s)	105, 436
Asp700I	GAANNNNTTC	1 cut(s)	517
AsuC2I	CCSGG	1 cut(s)	510
AsuHPI	GGTGA	1 cut(s)	391
AsuII	TTCGAA	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	510
BbsI	GAAGAC	1 cut(s)	249
BbvI	GCAGC	5 cut(s)	26, 204, 403, 688, 796
BccI	CCATC	6 cut(s)	16, 119, 230, 275, 545, 731
BceAI	ACGGC	2 cut(s)	45, 262
BcgI	CGANNNNNNTGC	4 cut(s)	753, 787, 827, 861
BciT130I	CCWGG	1 cut(s)	476
BciVI	GTATCC	1 cut(s)	459
BcnI	CCSGG	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	664
BfaI	CTAG	2 cut(s)	584, 824
BfuI	GTATCC	1 cut(s)	459
BglI	GCCNNNNNGGC	1 cut(s)	413
BisI	GCNGC	6 cut(s)	15, 218, 250, 417, 702, 810
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	6 cut(s)	16, 219, 251, 418, 703, 811
Bme1390I	CCNGG	2 cut(s)	476, 510
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	2 cut(s)	476, 510
BmsI	GCATC	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	249
Bpu1102I	GCTNAGC	1 cut(s)	504
Bpu14I	TTCGAA	1 cut(s)	226
BpuEI	CTTGAG	1 cut(s)	842
BpuMI	CCSGG	1 cut(s)	510
BsaJI	CCNNGG	2 cut(s)	195, 624
Bsc4I	CCNNNNNNNGG	1 cut(s)	729
Bse1I	ACTGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	476
BseDI	CCNNGG	2 cut(s)	195, 624
BseGI	GGATG	2 cut(s)	594, 868
BseLI	CCNNNNNNNGG	1 cut(s)	729
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	4 cut(s)	58, 335, 495, 694
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	184
BseXI	GCAGC	5 cut(s)	26, 204, 403, 688, 796
BshFI	GGCC	1 cut(s)	484
BsiSI	CCGG	1 cut(s)	510
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	729
BsmAI	GTCTC	1 cut(s)	664
BsmFI	GGGAC	1 cut(s)	298
BsmI	GAATGC	3 cut(s)	519, 704, 751
BsnI	GGCC	1 cut(s)	484
Bsp119I	TTCGAA	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp1720I	GCTNAGC	1 cut(s)	504
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	3 cut(s)	58, 249, 252
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	4 cut(s)	57, 336, 496, 693
BspLI	GGNNCC	1 cut(s)	187
BspT104I	TTCGAA	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	195, 624
BssT1I	CCWWGG	2 cut(s)	195, 624
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	1 cut(s)	610
BstBI	TTCGAA	1 cut(s)	226
BstDEI	CTNAG	4 cut(s)	44, 344, 504, 680
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	594, 868
BstMAI	GTCTC	1 cut(s)	664
BstMWI	GCNNNNNNNGC	4 cut(s)	246, 371, 413, 514
BstNI	CCWGG	1 cut(s)	476
BstNSI	RCATGY	1 cut(s)	842
BstSCI	CCNGG	2 cut(s)	474, 508
BstV1I	GCAGC	5 cut(s)	26, 204, 403, 688, 796
BstV2I	GAAGAC	1 cut(s)	249
BstXI	CCANNNNNNTGG	1 cut(s)	196
BsuI	GTATCC	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	484
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	2 cut(s)	594, 868
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	612
Csp6I	GTAC	1 cut(s)	636
CviAII	CATG	5 cut(s)	181, 196, 395, 741, 839
CviQI	GTAC	1 cut(s)	636
DdeI	CTNAG	4 cut(s)	44, 344, 504, 680
EciI	GGCGGA	1 cut(s)	267
Eco130I	CCWWGG	2 cut(s)	195, 624
Eco24I	GRGCYC	1 cut(s)	510
EcoRI	GAATTC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	474
EcoT14I	CCWWGG	2 cut(s)	195, 624
EcoT38I	GRGCYC	1 cut(s)	510
ErhI	CCWWGG	2 cut(s)	195, 624
FaeI	CATG	5 cut(s)	184, 199, 398, 744, 842
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	5 cut(s)	180, 195, 394, 740, 838
FauNDI	CATATG	1 cut(s)	410
Fnu4HI	GCNGC	6 cut(s)	15, 218, 250, 417, 702, 810
FokI	GGATG	1 cut(s)	601
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	6 cut(s)	15, 218, 250, 417, 702, 810
FspBI	CTAG	2 cut(s)	584, 824
GluI	GCNGC	6 cut(s)	15, 218, 250, 417, 702, 810
HaeIII	GGCC	1 cut(s)	484
HapII	CCGG	1 cut(s)	510
Hin1II	CATG	5 cut(s)	184, 199, 398, 744, 842
HinfI	GANTC	7 cut(s)	48, 125, 177, 298, 326, 382, 657
HpaII	CCGG	1 cut(s)	510
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	1 cut(s)	558
Hpy188I	TCNGA	5 cut(s)	47, 84, 292, 606, 710
Hpy188III	TCNNGA	2 cut(s)	266, 736
Hpy8I	GTNNAC	1 cut(s)	558
Hpy99I	CGWCG	1 cut(s)	496
HpyAV	CCTTC	1 cut(s)	528
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4IV	ACGT	1 cut(s)	554
HpyCH4V	TGCA	4 cut(s)	419, 617, 704, 838
HpyF10VI	GCNNNNNNNGC	4 cut(s)	246, 371, 413, 514
HpyF3I	CTNAG	4 cut(s)	44, 344, 504, 680
HpySE526I	ACGT	1 cut(s)	554
Hsp92II	CATG	5 cut(s)	184, 199, 398, 744, 842
LmnI	GCTCC	1 cut(s)	171
LpnPI	CCDG	9 cut(s)	107, 115, 117, 147, 461, 488, 523, 721, 798
Lsp1109I	GCAGC	5 cut(s)	26, 204, 403, 688, 796
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	2 cut(s)	584, 824
MaeII	ACGT	1 cut(s)	554
MaeIII	GTNAC	3 cut(s)	550, 610, 651
MboII	GAAGA	6 cut(s)	19, 43, 254, 281, 513, 532
MfeI	CAATTG	1 cut(s)	570
MhlI	GDGCHC	1 cut(s)	510
MluCI	AATT	7 cut(s)	22, 105, 436, 486, 570, 687, 843
MlyI	GAGTC	3 cut(s)	186, 307, 666
MmeI	TCCRAC	2 cut(s)	213, 303
MnlI	CCTC	3 cut(s)	162, 384, 474
MroXI	GAANNNNTTC	1 cut(s)	517
MspI	CCGG	1 cut(s)	510
MspR9I	CCNGG	2 cut(s)	476, 510
MunI	CAATTG	1 cut(s)	570
Mva1269I	GAATGC	3 cut(s)	519, 704, 751
MvaI	CCWGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	4 cut(s)	246, 371, 413, 514
NciI	CCSGG	1 cut(s)	510
NcoI	CCATGG	1 cut(s)	195
NdeI	CATATG	1 cut(s)	410
NlaIII	CATG	5 cut(s)	184, 199, 398, 744, 842
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	610
NspI	RCATGY	1 cut(s)	842
NspV	TTCGAA	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PctI	GAATGC	3 cut(s)	519, 704, 751
PdmI	GAANNNNTTC	1 cut(s)	517
PfeI	GAWTC	4 cut(s)	48, 125, 326, 382
PflMI	CCANNNNNTGG	1 cut(s)	729
PkrI	GCNGC	6 cut(s)	16, 219, 251, 418, 703, 811
PleI	GAGTC	3 cut(s)	185, 306, 665
PpsI	GAGTC	3 cut(s)	185, 306, 665
Psp6I	CCWGG	1 cut(s)	474
PspGI	CCWGG	1 cut(s)	474
PspN4I	GGNNCC	1 cut(s)	187
RsaI	GTAC	1 cut(s)	637
RsaNI	GTAC	1 cut(s)	636
SatI	GCNGC	6 cut(s)	15, 218, 250, 417, 702, 810
SchI	GAGTC	3 cut(s)	186, 307, 666
ScrFI	CCNGG	2 cut(s)	476, 510
SduI	GDGCHC	1 cut(s)	510
SetI	ASST	8 cut(s)	136, 157, 207, 261, 336, 505, 557, 872
SfaNI	GCATC	1 cut(s)	204
SfuI	TTCGAA	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
Sse9I	AATT	7 cut(s)	22, 105, 436, 486, 570, 687, 843
SsiI	CCGC	3 cut(s)	58, 249, 252
SspMI	CTAG	2 cut(s)	584, 824
StyD4I	CCNGG	2 cut(s)	474, 508
StyI	CCWWGG	2 cut(s)	195, 624
TaaI	ACNGT	1 cut(s)	610
TaiI	ACGT	1 cut(s)	557
TaqI	TCGA	3 cut(s)	226, 329, 340
TasI	AATT	7 cut(s)	22, 105, 436, 486, 570, 687, 843
TauI	GCSGC	1 cut(s)	252
TfiI	GAWTC	4 cut(s)	48, 125, 326, 382
TscAI	CASTG	1 cut(s)	619
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	5 cut(s)	14, 217, 416, 701, 809
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	4 cut(s)	117, 251, 605, 662
TspGWI	ACGGA	2 cut(s)	414, 480
TspRI	CASTG	1 cut(s)	619
Van91I	CCANNNNNTGG	1 cut(s)	729
XapI	RAATTY	2 cut(s)	105, 436
XceI	RCATGY	1 cut(s)	842
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	517
XspI	CTAG	2 cut(s)	584, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.