Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002938

Physical Location & Seq

Genomic Coordinates Forward (+)

7065277 .. 7067238

Gene Structure 1962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGACATCATCAGCAGCCATTAGTATTCTCCAACCCAAACTCCAATTCTTCCCCTGTCGTTTTTGCTCCCTCAAATCATTCAAACCCAAATTTCCCATATCCAAACTGGCCTTCTCCGGTGGATTAGACCCCACGAAAGCTCCTTCACGTAGAAACAGAGTCATGGGTTCCAACAATAGCATCGTTGAGCTCACAAATTTGCTCCCTTTTCGGAACAACGGCAACGAAGCTGTTAGGGTGCTCCAACATGGGTCTGAGGATTCGGGTCTTGTATCCAATAGGTTTGAATCCACACTCAATCGATTGAGTAAGTGGCTTGTGTCTGGCGTTTTTGCTGTGGTGATACTATGTAGGCATGATGGGGAAGCTATGTGGGCTGCACTGGGGTCTGTGGTGAATTCCATACTCTGTATTGTACTTAAGAAGATATTGAATCAAGAAAGGCCTGTTCCTTCTTTGAGATCCGAGCCTGGAATGCCGTCTTCGCATTCTCAATCCATCTTCTACATTTTTATGTTTGCAATTTTTTCAATTGTGGAATGGCTAGGGATAAATGAGATTAGCCTGATTACTAGTGCTCTTGCCTTGGCATTTGGTGCATATCTTTCATGGTTAAGAATTTCTCAGCGACTTCATACCATGAGCCAAGTGGTTGTGGGTGCTGCAATTGGAACCGTTTTCTCCATTTTGTGGTACTGGTCATGGAATGCTGTTGTTCATGAAGCATTTACTTCCTTTTTGTGGGTTCGAATAGTTGTTATTTTGGGGGCAGCTGTGTTTTGTGCAGGATTCCTTTTGTATGTGATTCGTTATTGGATTAGGGATGACCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

278

Amino Acids

30.98

Weight (kDa)

9.82

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	135 - 236	1.5e-09	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50920 AT3G50920 AT5G66450 AT5G66450 AT5G66450 AT5G66450 AT5G66450
fragaria_vesca	FvH4_1g12790
malus_domestica	MD02G1143500.v1.1 MD15G1256700.v1.1
prunus_persica	Prupe.7G158200_v2.0.a1
pyrus_communis	pycom02g11340 pycom15g22470
rosa_chinensis	RchiOBHm_Chr2g0100911 RchiOBHm_Chr2g0100921 RchiOBHm_Chr2g0100931
rosa_laevigata	RLG00000016993 RLG00000017024 RLG00000017026
rosa_multiflora	Rmu_sc0001659.1_g000048 Rmu_sc0001862.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141740 Rroxscaffold_6G00391440
rosa_rugosa	Rorug02G0093700 Rorug02G0093800 Rorug02G0093800
rosa_samantha	Rh2AG139800 Rh2AG141300 Rh2AG141400 Rh2BG143100 Rh2BG146500 Rh2BG146600 Rh2CG147700 Rh2CG147800 Rh2DG147000 Rh2DG147100
rosa_wichuraiana	Rw2G011080 Rw2G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	690
AclWI	GGATC	1 cut(s)	456
AcsI	RAATTY	4 cut(s)	89, 196, 397, 618
AfaI	GTAC	2 cut(s)	417, 695
AfiI	CCNNNNNNNGG	2 cut(s)	690, 741
AflII	CTTAAG	1 cut(s)	419
AgsI	TTSAA	4 cut(s)	82, 287, 433, 531
AhlI	ACTAGT	1 cut(s)	572
AjnI	CCWGG	1 cut(s)	469
AjuI	GAANNNNNNNTTGG	4 cut(s)	29, 61, 95, 127
AluBI	AGCT	5 cut(s)	140, 190, 230, 368, 773
AluI	AGCT	5 cut(s)	140, 190, 230, 368, 773
Alw21I	GWGCWC	3 cut(s)	192, 243, 580
AlwI	GGATC	1 cut(s)	456
AoxI	GGCC	2 cut(s)	108, 443
ApeKI	GCWGC	4 cut(s)	14, 377, 662, 770
ApoI	RAATTY	4 cut(s)	89, 196, 397, 618
AsuHPI	GGTGA	2 cut(s)	352, 406
AsuII	TTCGAA	1 cut(s)	748
BanII	GRGCYC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	3 cut(s)	192, 243, 580
BbvI	GCAGC	4 cut(s)	26, 364, 649, 782
BccI	CCATC	2 cut(s)	353, 506
BceAI	ACGGC	2 cut(s)	235, 463
BciT130I	CCWGG	1 cut(s)	471
BciVI	GTATCC	1 cut(s)	283
BcuI	ACTAGT	1 cut(s)	572
BfaI	CTAG	2 cut(s)	545, 573
BfrI	CTTAAG	1 cut(s)	419
BfuI	GTATCC	1 cut(s)	283
BisI	GCNGC	4 cut(s)	15, 378, 663, 771
BlsI	GCNGC	4 cut(s)	16, 379, 664, 772
Bme1390I	CCNGG	1 cut(s)	471
BmiI	GGNNCC	2 cut(s)	169, 673
BmrFI	CCNGG	1 cut(s)	471
BmrI	ACTGGG	1 cut(s)	392
BmsI	GCATC	1 cut(s)	189
BmuI	ACTGGG	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	474
Bpu14I	TTCGAA	1 cut(s)	748
Bsa29I	ATCGAT	1 cut(s)	301
BsaAI	YACGTR	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	585
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	4 cut(s)	24, 54, 124, 154
Bsc4I	CCNNNNNNNGG	2 cut(s)	690, 741
Bse1I	ACTGG	3 cut(s)	111, 387, 701
BseBI	CCWGG	1 cut(s)	471
BseCI	ATCGAT	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	1 cut(s)	829
BseLI	CCNNNNNNNGG	2 cut(s)	690, 741
BseMII	CTCAG	2 cut(s)	246, 638
BseNI	ACTGG	3 cut(s)	111, 387, 701
BseXI	GCAGC	4 cut(s)	26, 364, 649, 782
BsgI	GTGCAG	2 cut(s)	363, 804
BshFI	GGCC	2 cut(s)	110, 445
BshVI	ATCGAT	1 cut(s)	301
BsiHKAI	GWGCWC	3 cut(s)	192, 243, 580
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	690, 741
BsmI	GAATGC	3 cut(s)	480, 487, 712
BsnI	GGCC	2 cut(s)	110, 445
Bsp119I	TTCGAA	1 cut(s)	748
Bsp1286I	GDGCHC	3 cut(s)	192, 243, 580
Bsp143I	GATC	1 cut(s)	461
BspANI	GGCC	2 cut(s)	110, 445
BspCNI	CTCAG	2 cut(s)	247, 637
BspDI	ATCGAT	1 cut(s)	301
BspHI	TCATGA	1 cut(s)	718
BspLI	GGNNCC	2 cut(s)	169, 673
BspPI	GGATC	1 cut(s)	456
BspT104I	TTCGAA	1 cut(s)	748
BspTI	CTTAAG	1 cut(s)	419
BsrI	ACTGG	3 cut(s)	111, 387, 701
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	1 cut(s)	461
BssT1I	CCWWGG	1 cut(s)	585
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	1 cut(s)	676
BstAFI	CTTAAG	1 cut(s)	419
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstBAI	YACGTR	1 cut(s)	149
BstBI	TTCGAA	1 cut(s)	748
BstDEI	CTNAG	2 cut(s)	255, 624
BstF5I	GGATG	1 cut(s)	829
BstKTI	GATC	1 cut(s)	464
BstMBI	GATC	1 cut(s)	461
BstMWI	GCNNNNNNNGC	4 cut(s)	374, 475, 484, 596
BstNI	CCWGG	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	469
BstV1I	GCAGC	4 cut(s)	26, 364, 649, 782
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
Bsu15I	ATCGAT	1 cut(s)	301
BsuI	GTATCC	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	110, 445
BsuTUI	ATCGAT	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	829
BtsIMutI	CAGTG	1 cut(s)	380
CciI	TCATGA	1 cut(s)	718
ClaI	ATCGAT	1 cut(s)	301
Csp6I	GTAC	2 cut(s)	416, 694
CviAII	CATG	7 cut(s)	163, 248, 356, 609, 640, 702, 719
CviQI	GTAC	2 cut(s)	416, 694
DdeI	CTNAG	2 cut(s)	255, 624
DpnI	GATC	1 cut(s)	463
DpnII	GATC	1 cut(s)	461
Ecl136II	GAGCTC	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	585
Eco147I	AGGCCT	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	7 cut(s)	166, 251, 359, 612, 643, 705, 722
FatI	CATG	7 cut(s)	162, 247, 355, 608, 639, 701, 718
Fnu4HI	GCNGC	4 cut(s)	15, 378, 663, 771
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	4 cut(s)	15, 378, 663, 771
FspBI	CTAG	2 cut(s)	545, 573
GluI	GCNGC	4 cut(s)	15, 378, 663, 771
HaeIII	GGCC	2 cut(s)	110, 445
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	7 cut(s)	166, 251, 359, 612, 643, 705, 722
HinfI	GANTC	6 cut(s)	159, 260, 287, 433, 789, 805
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	2 cut(s)	352, 406
Hpy188I	TCNGA	3 cut(s)	213, 256, 466
Hpy188III	TCNNGA	2 cut(s)	437, 719
HpyAV	CCTTC	3 cut(s)	121, 153, 462
HpyCH4III	ACNGT	1 cut(s)	676
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	5 cut(s)	380, 521, 599, 665, 785
HpyF10VI	GCNNNNNNNGC	4 cut(s)	374, 475, 484, 596
HpyF3I	CTNAG	2 cut(s)	255, 624
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	7 cut(s)	166, 251, 359, 612, 643, 705, 722
Kzo9I	GATC	1 cut(s)	461
LmnI	GCTCC	4 cut(s)	71, 145, 207, 246
Lsp1109I	GCAGC	4 cut(s)	26, 364, 649, 782
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	2 cut(s)	545, 573
MaeII	ACGT	1 cut(s)	148
MalI	GATC	1 cut(s)	463
MboI	GATC	1 cut(s)	461
MboII	GAAGA	4 cut(s)	40, 436, 474, 493
MfeI	CAATTG	2 cut(s)	531, 666
MflI	RGATCY	1 cut(s)	461
MhlI	GDGCHC	3 cut(s)	192, 243, 580
MluCI	AATT	8 cut(s)	44, 89, 196, 397, 522, 531, 618, 666
MlyI	GAGTC	1 cut(s)	168
MmeI	TCCRAC	3 cut(s)	55, 195, 268
MnlI	CCTC	2 cut(s)	80, 250
MseI	TTAA	2 cut(s)	420, 614
MslI	CAYNNNNRTG	1 cut(s)	512
MspA1I	CMGCKG	1 cut(s)	773
MspCI	CTTAAG	1 cut(s)	419
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	471
MunI	CAATTG	2 cut(s)	531, 666
Mva1269I	GAATGC	3 cut(s)	480, 487, 712
MvaI	CCWGG	1 cut(s)	471
MwoI	GCNNNNNNNGC	4 cut(s)	374, 475, 484, 596
NdeII	GATC	1 cut(s)	461
NlaIII	CATG	7 cut(s)	166, 251, 359, 612, 643, 705, 722
NlaIV	GGNNCC	2 cut(s)	169, 673
NspV	TTCGAA	1 cut(s)	748
PagI	TCATGA	1 cut(s)	718
PceI	AGGCCT	1 cut(s)	445
PctI	GAATGC	3 cut(s)	480, 487, 712
PfeI	GAWTC	5 cut(s)	260, 287, 433, 789, 805
PflMI	CCANNNNNTGG	1 cut(s)	690
PkrI	GCNGC	4 cut(s)	16, 379, 664, 772
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	149
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	2 cut(s)	169, 673
PsuI	RGATCY	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	2 cut(s)	417, 695
RsaNI	GTAC	2 cut(s)	416, 694
RseI	CAYNNNNRTG	1 cut(s)	512
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	420, 614
SatI	GCNGC	4 cut(s)	15, 378, 663, 771
Sau3AI	GATC	1 cut(s)	461
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	1 cut(s)	471
SduI	GDGCHC	3 cut(s)	192, 243, 580
SetI	ASST	7 cut(s)	142, 151, 192, 232, 284, 370, 775
SfaNI	GCATC	1 cut(s)	189
SfuI	TTCGAA	1 cut(s)	748
SmiMI	CAYNNNNRTG	1 cut(s)	512
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SpeI	ACTAGT	1 cut(s)	572
Sse9I	AATT	8 cut(s)	44, 89, 196, 397, 522, 531, 618, 666
SseBI	AGGCCT	1 cut(s)	445
SspMI	CTAG	2 cut(s)	545, 573
SstI	GAGCTC	1 cut(s)	192
StuI	AGGCCT	1 cut(s)	445
StyD4I	CCNGG	1 cut(s)	469
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	1 cut(s)	676
TaiI	ACGT	1 cut(s)	151
TaqI	TCGA	2 cut(s)	301, 748
TasI	AATT	8 cut(s)	44, 89, 196, 397, 522, 531, 618, 666
TatI	WGTACW	1 cut(s)	415
TfiI	GAWTC	5 cut(s)	260, 287, 433, 789, 805
Tru1I	TTAA	2 cut(s)	420, 614
Tru9I	TTAA	2 cut(s)	420, 614
TscAI	CASTG	1 cut(s)	387
TseI	GCWGC	4 cut(s)	14, 377, 662, 770
TspDTI	ATGAA	4 cut(s)	597, 623, 707, 735
TspRI	CASTG	1 cut(s)	387
Van91I	CCANNNNNTGG	1 cut(s)	690
Vha464I	CTTAAG	1 cut(s)	419
XapI	RAATTY	4 cut(s)	89, 196, 397, 618
XcmI	CCANNNNNNNNNTGG	2 cut(s)	103, 646
XspI	CTAG	2 cut(s)	545, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.