Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002938

Physical Location & Seq

Genomic Coordinates Reverse (-)

11919742 .. 11921353

Gene Structure 1612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016993

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCTTGTACTGTGTGCTATTGCTGTTGTGGAATGGCTAGGGATAAATGAGATTACCATAATTATTGGTGCTCTTGCCTTGGCATTTGGTGCATATCTTTCGTGGTTACGAGTTTCGCAGCGACTTCATACGATGAGCCAAGTGATTGTGGGTTCTGCAATTGGAACCATCTTCTCCATTTTGTGGTACTGGTCATGGAATGCCGTTGTGCTTGAAGCATTTACTTCCTTTTTGTGGGTTCGAATAGTTGTTGTTTTGGGGGCAGCTGGATTCTGTGCAGGATTCCTTTTATTTTGTGCCTTGGAATTGTTCTTCTCCTTGGGTGGATTAGTCCTCAAGAAAGCTGCAAGAAACACAGTCATGGCTTCCAGCACCATTGTTGAGCTGATTAATTTGCCTAATGGCGACATAGTGCTTGAACAGGAAAACTATAATTCTGGCCTCGAAACCACTGTTGACCGATTGAGCAAGTGGCTTGTACCTGGACTTTTTGTTGTTGGAATACTATGTAGGCATGATGCAGAAGCTATGTGGGCTGCCGTGGGGTATCTGAGCTTGGAGTGCCGTCTTTGCATGCGCAATTATCTTCTACATTGTTATATTCGCCATTTCTTCAGTTGTGCGTTCTCTGGGGATAAATGTGAACACGCTGACCATGAGTGGATTTGCCTTGGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

227

Amino Acids

25.13

Weight (kDa)

5.83

Isoelectric Point (pI)

21.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50920 AT3G50920 AT5G66450 AT5G66450 AT5G66450 AT5G66450 AT5G66450
fragaria_vesca	FvH4_1g12790
malus_domestica	MD02G1143500.v1.1 MD15G1256700.v1.1
prunus_persica	Prupe.7G158200_v2.0.a1
pyrus_communis	pycom02g11340 pycom15g22470
rosa_chinensis	RchiOBHm_Chr2g0100911 RchiOBHm_Chr2g0100921 RchiOBHm_Chr2g0100931
rosa_laevigata	RLG00000016993 RLG00000017024 RLG00000017026
rosa_multiflora	Rmu_sc0001659.1_g000048 Rmu_sc0001862.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141740 Rroxscaffold_6G00391440
rosa_rugosa	Rorug02G0093700 Rorug02G0093800 Rorug02G0093800
rosa_samantha	Rh2AG139800 Rh2AG141300 Rh2AG141400 Rh2BG143100 Rh2BG146500 Rh2BG146600 Rh2CG147700 Rh2CG147800 Rh2DG147000 Rh2DG147100
rosa_wichuraiana	Rw2G011080 Rw2G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	578
AccB7I	CCANNNNNTGG	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	598
AfaI	GTAC	3 cut(s)	9, 188, 480
AfiI	CCNNNNNNNGG	2 cut(s)	183, 234
AgsI	TTSAA	2 cut(s)	215, 419
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	5 cut(s)	266, 344, 385, 527, 555
AluI	AGCT	5 cut(s)	266, 344, 385, 527, 555
Alw21I	GWGCWC	1 cut(s)	73
AoxI	GGCC	1 cut(s)	439
ApeKI	GCWGC	4 cut(s)	118, 263, 344, 536
AseI	ATTAAT	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	579
AsuII	TTCGAA	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	4 cut(s)	130, 275, 331, 523
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	3 cut(s)	188, 524, 549
BcgI	CGANNNNNNTGC	2 cut(s)	81, 115
BciT130I	CCWGG	1 cut(s)	483
BfaI	CTAG	1 cut(s)	38
BisI	GCNGC	4 cut(s)	119, 264, 345, 537
BlsI	GCNGC	4 cut(s)	120, 265, 346, 538
Bme1390I	CCNGG	1 cut(s)	483
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	1 cut(s)	508
Bpu14I	TTCGAA	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	320
BsaJI	CCNNGG	5 cut(s)	78, 300, 318, 540, 670
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 234
Bse1I	ACTGG	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	5 cut(s)	78, 300, 318, 540, 670
BseLI	CCNNNNNNNGG	2 cut(s)	183, 234
BseMII	CTCAG	1 cut(s)	542
BseNI	ACTGG	1 cut(s)	194
BseXI	GCAGC	4 cut(s)	130, 275, 331, 523
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	441
BsiHKAI	GWGCWC	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	183, 234
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	441
Bsp119I	TTCGAA	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	73
BspANI	GGCC	1 cut(s)	441
BspCNI	CTCAG	1 cut(s)	543
BspLI	GGNNCC	1 cut(s)	166
BspT104I	TTCGAA	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	5 cut(s)	78, 300, 318, 540, 670
BssT1I	CCWWGG	4 cut(s)	78, 300, 318, 670
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	3 cut(s)	12, 358, 454
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstBI	TTCGAA	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	575
BstDEI	CTNAG	1 cut(s)	551
BstDSI	CCRYGG	1 cut(s)	540
BstHHI	GCGC	1 cut(s)	579
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 533, 561, 570
BstNI	CCWGG	1 cut(s)	483
BstNSI	RCATGY	1 cut(s)	577
BstSCI	CCNGG	1 cut(s)	481
BstV1I	GCAGC	4 cut(s)	130, 275, 331, 523
BsuRI	GGCC	1 cut(s)	441
BtgI	CCRYGG	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	450
Cac8I	GCNNGC	1 cut(s)	575
CfoI	GCGC	1 cut(s)	579
Csp6I	GTAC	3 cut(s)	8, 187, 479
CviAII	CATG	5 cut(s)	195, 361, 515, 574, 656
CviQI	GTAC	3 cut(s)	8, 187, 479
DdeI	CTNAG	1 cut(s)	551
Eco130I	CCWWGG	4 cut(s)	78, 300, 318, 670
Eco57I	CTGAAG	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	4 cut(s)	78, 300, 318, 670
ErhI	CCWWGG	4 cut(s)	78, 300, 318, 670
FaeI	CATG	5 cut(s)	198, 364, 518, 577, 659
FatI	CATG	5 cut(s)	194, 360, 514, 573, 655
Fnu4HI	GCNGC	4 cut(s)	119, 264, 345, 537
Fsp4HI	GCNGC	4 cut(s)	119, 264, 345, 537
FspBI	CTAG	1 cut(s)	38
FspI	TGCGCA	1 cut(s)	578
GlaI	GCGC	1 cut(s)	578
GluI	GCNGC	4 cut(s)	119, 264, 345, 537
HaeIII	GGCC	1 cut(s)	441
HhaI	GCGC	1 cut(s)	579
Hin1II	CATG	5 cut(s)	198, 364, 518, 577, 659
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	2 cut(s)	270, 282
Hpy166II	GTNNAC	2 cut(s)	457, 644
Hpy188I	TCNGA	1 cut(s)	552
Hpy188III	TCNNGA	1 cut(s)	337
Hpy8I	GTNNAC	2 cut(s)	457, 644
HpyCH4III	ACNGT	3 cut(s)	12, 358, 454
HpyCH4V	TGCA	6 cut(s)	92, 158, 278, 347, 521, 573
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 533, 561, 570
HpyF3I	CTNAG	1 cut(s)	551
Hsp92II	CATG	5 cut(s)	198, 364, 518, 577, 659
HspAI	GCGC	1 cut(s)	577
LpnPI	CCDG	9 cut(s)	175, 252, 264, 382, 407, 423, 468, 495, 615
Lsp1109I	GCAGC	4 cut(s)	130, 275, 331, 523
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	105
MboII	GAAGA	4 cut(s)	163, 304, 578, 604
MfeI	CAATTG	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	6 cut(s)	60, 159, 305, 391, 433, 580
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	2 cut(s)	344, 452
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	483
MunI	CAATTG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	4 cut(s)	89, 533, 561, 570
NlaIII	CATG	5 cut(s)	198, 364, 518, 577, 659
NlaIV	GGNNCC	1 cut(s)	166
NsbI	TGCGCA	1 cut(s)	578
NspI	RCATGY	1 cut(s)	577
NspV	TTCGAA	1 cut(s)	241
PaeI	GCATGC	1 cut(s)	577
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	270, 282
PflMI	CCANNNNNTGG	1 cut(s)	183
PkrI	GCNGC	4 cut(s)	120, 265, 346, 538
PshBI	ATTAAT	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	1 cut(s)	166
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	3 cut(s)	9, 188, 480
RsaNI	GTAC	3 cut(s)	8, 187, 479
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	4 cut(s)	119, 264, 345, 537
ScrFI	CCNGG	1 cut(s)	483
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	6 cut(s)	268, 346, 387, 484, 529, 557
SfaNI	GCATC	1 cut(s)	508
SfuI	TTCGAA	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
SphI	GCATGC	1 cut(s)	577
Sse9I	AATT	6 cut(s)	60, 159, 305, 391, 433, 580
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	4 cut(s)	78, 300, 318, 670
TaaI	ACNGT	3 cut(s)	12, 358, 454
TaqI	TCGA	2 cut(s)	241, 444
TaqII	GACCGA	1 cut(s)	474
TasI	AATT	6 cut(s)	60, 159, 305, 391, 433, 580
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	270, 282
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	457
TseI	GCWGC	4 cut(s)	118, 263, 344, 536
TspDTI	ATGAA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	457
Van91I	CCANNNNNTGG	1 cut(s)	183
VspI	ATTAAT	1 cut(s)	390
XceI	RCATGY	1 cut(s)	577
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.