Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002938

Physical Location & Seq

Genomic Coordinates Forward (+)

12218945 .. 12220508

Gene Structure 1564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017024

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGACATCATCAACGGCCATTAGTCTCCAATTCTTCCCCTGTCGTTGTTTTTGCAGCCTCAAATCGTTAAAACCCTTCTCCTCTCCCAAATTACCCATATCGAAATTGGCCTTCTCCGGTGGATTAGACCCCAAGAAAGCTCCTCCACTTAGAAACAGGGTCATGGGTTCCAACAATAGCATGCTTGAGCTCATAAATTTGCTCCCTTTTCGGAACAACGCTAATGGCCATGAAGCTGTTAGAGTGCTCCAACGAGAAGAATGTTTTGATGGGTCTGAGGATTCGGGCCCTGGAATTGCGGATAATGGGTTCGAGTCCACTCTCAATCGATTGAGTAAGTGGCTTGTGTCTGGCCTTTTTGCTGTGGTGATACTATGTAGGCATGATGCAGAAGCTATGTGGGCTGCAATGGGGTCTGTGGTGAATTCCACACTCTCTATTATACTAAAAAAGATACTAAATCAGGAGAGGCCTACTCCTTCTTTGAGATCTGAGCCTGGAATGCCGTCGTCGCATTCCCAATCCATCTTCTACATTTTTATGTTTGCAATTTTTTCATTTGTGGAATGGCTAGGGATAAATGAGATTACCATAATTATTGGTGCTCTTGCCTTGGCATTTGGTGCATATCTTTCGTGGTTACGAGTTTCGCAGCGACTTCATACGATGAGCCAAGTGGTTGTGGGTGCTGCAATTGGAACCATCTTCTCCATTTTGTGGTACTGGTCATGGAATGCTGTTGTGCATGAAGCATTTACTTCCTTTTTGTGGGTTCGAATAGTTGTTGTTTTGGGGGCAGCTGGATTTTGTGCAGGATTCCTTTTGTATGTGATTCGTTATTGGATTAGGGATGACCGAGGAACTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

290

Amino Acids

32.13

Weight (kDa)

9.11

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	162 - 245	3.6e-10	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50920 AT3G50920 AT5G66450 AT5G66450 AT5G66450 AT5G66450 AT5G66450
fragaria_vesca	FvH4_1g12790
malus_domestica	MD02G1143500.v1.1 MD15G1256700.v1.1
prunus_persica	Prupe.7G158200_v2.0.a1
pyrus_communis	pycom02g11340 pycom15g22470
rosa_chinensis	RchiOBHm_Chr2g0100911 RchiOBHm_Chr2g0100921 RchiOBHm_Chr2g0100931
rosa_laevigata	RLG00000016993 RLG00000017024 RLG00000017026
rosa_multiflora	Rmu_sc0001659.1_g000048 Rmu_sc0001862.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141740 Rroxscaffold_6G00391440
rosa_rugosa	Rorug02G0093700 Rorug02G0093800 Rorug02G0093800
rosa_samantha	Rh2AG139800 Rh2AG141300 Rh2AG141400 Rh2BG143100 Rh2BG146500 Rh2BG146600 Rh2CG147700 Rh2CG147800 Rh2DG147000 Rh2DG147100
rosa_wichuraiana	Rw2G011080 Rw2G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	717
AciI	CCGC	1 cut(s)	299
AcoI	YGGCCR	2 cut(s)	15, 226
AcsI	RAATTY	2 cut(s)	196, 424
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	2 cut(s)	717, 768
AjnI	CCWGG	2 cut(s)	289, 496
AloI	GAACNNNNNNTCC	2 cut(s)	293, 325
AluBI	AGCT	5 cut(s)	140, 190, 236, 395, 800
AluI	AGCT	5 cut(s)	140, 190, 236, 395, 800
Alw21I	GWGCWC	3 cut(s)	192, 249, 607
Alw26I	GTCTC	1 cut(s)	29
AoxI	GGCC	6 cut(s)	15, 108, 226, 286, 352, 470
ApaI	GGGCCC	1 cut(s)	290
ApeKI	GCWGC	5 cut(s)	54, 404, 652, 689, 797
ApoI	RAATTY	2 cut(s)	196, 424
AspS9I	GGNCC	2 cut(s)	286, 287
AsuHPI	GGTGA	2 cut(s)	379, 433
AsuII	TTCGAA	1 cut(s)	775
BaeGI	GKGCMC	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	228
BanII	GRGCYC	2 cut(s)	192, 290
Bbv12I	GWGCWC	3 cut(s)	192, 249, 607
BbvI	GCAGC	5 cut(s)	66, 391, 664, 676, 809
BccI	CCATC	3 cut(s)	263, 533, 710
BceAI	ACGGC	2 cut(s)	30, 490
BcgI	CGANNNNNNTGC	2 cut(s)	615, 649
BciT130I	CCWGG	2 cut(s)	291, 498
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	572
BglII	AGATCT	1 cut(s)	488
BisI	GCNGC	5 cut(s)	55, 405, 653, 690, 798
BlsI	GCNGC	5 cut(s)	56, 406, 654, 691, 799
Bme1390I	CCNGG	2 cut(s)	291, 498
BmgT120I	GGNCC	2 cut(s)	286, 287
BmiI	GGNNCC	3 cut(s)	169, 288, 700
BmrFI	CCNGG	2 cut(s)	291, 498
BmsI	GCATC	1 cut(s)	376
BplI	GAGNNNNNCTC	2 cut(s)	460, 492
Bpu14I	TTCGAA	1 cut(s)	775
BpuEI	CTTGAG	1 cut(s)	206
Bsa29I	ATCGAT	1 cut(s)	328
BsaJI	CCNNGG	3 cut(s)	289, 612, 856
BsaWI	WCCGGW	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	2 cut(s)	717, 768
Bse1I	ACTGG	1 cut(s)	728
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	2 cut(s)	291, 498
BseCI	ATCGAT	1 cut(s)	328
BseDI	CCNNGG	3 cut(s)	289, 612, 856
BseGI	GGATG	1 cut(s)	856
BseLI	CCNNNNNNNGG	2 cut(s)	717, 768
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	2 cut(s)	267, 483
BseNI	ACTGG	1 cut(s)	728
BseRI	GAGGAG	2 cut(s)	70, 132
BseSI	GKGCMC	1 cut(s)	290
BseXI	GCAGC	5 cut(s)	66, 391, 664, 676, 809
BsgI	GTGCAG	1 cut(s)	831
BshFI	GGCC	6 cut(s)	17, 110, 228, 288, 354, 472
BshVI	ATCGAT	1 cut(s)	328
BsiHKAI	GWGCWC	3 cut(s)	192, 249, 607
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	717, 768
BsmAI	GTCTC	1 cut(s)	29
BsmI	GAATGC	3 cut(s)	507, 514, 739
BsnI	GGCC	6 cut(s)	17, 110, 228, 288, 354, 472
Bsp119I	TTCGAA	1 cut(s)	775
Bsp120I	GGGCCC	1 cut(s)	286
Bsp1286I	GDGCHC	4 cut(s)	192, 249, 290, 607
Bsp143I	GATC	1 cut(s)	488
BspACI	CCGC	1 cut(s)	299
BspANI	GGCC	6 cut(s)	17, 110, 228, 288, 354, 472
BspCNI	CTCAG	2 cut(s)	268, 484
BspDI	ATCGAT	1 cut(s)	328
BspLI	GGNNCC	3 cut(s)	169, 288, 700
BspT104I	TTCGAA	1 cut(s)	775
BsrDI	GCAATG	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	728
BssECI	CCNNGG	3 cut(s)	289, 612, 856
BssMI	GATC	1 cut(s)	488
BssT1I	CCWWGG	1 cut(s)	612
Bst2UI	CCWGG	2 cut(s)	291, 498
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstBI	TTCGAA	1 cut(s)	775
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	3 cut(s)	149, 276, 492
BstF5I	GGATG	1 cut(s)	856
BstKTI	GATC	1 cut(s)	491
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	488
BstMWI	GCNNNNNNNGC	4 cut(s)	401, 502, 511, 623
BstNI	CCWGG	2 cut(s)	291, 498
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	2 cut(s)	289, 496
BstSLI	GKGCMC	1 cut(s)	290
BstV1I	GCAGC	5 cut(s)	66, 391, 664, 676, 809
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
Bsu15I	ATCGAT	1 cut(s)	328
BsuRI	GGCC	6 cut(s)	17, 110, 228, 288, 354, 472
BsuTUI	ATCGAT	1 cut(s)	328
BtsCI	GGATG	1 cut(s)	856
Cac8I	GCNNGC	1 cut(s)	182
Cfr13I	GGNCC	2 cut(s)	286, 287
ClaI	ATCGAT	1 cut(s)	328
Csp6I	GTAC	1 cut(s)	721
CviAII	CATG	6 cut(s)	163, 181, 230, 383, 729, 746
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	3 cut(s)	149, 276, 492
DpnI	GATC	1 cut(s)	490
DpnII	GATC	1 cut(s)	488
EaeI	YGGCCR	2 cut(s)	15, 226
Ecl136II	GAGCTC	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	612
Eco147I	AGGCCT	1 cut(s)	472
Eco24I	GRGCYC	2 cut(s)	192, 290
Eco53kI	GAGCTC	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRI	GAATTC	1 cut(s)	424
EcoRII	CCWGG	2 cut(s)	289, 496
EcoT14I	CCWWGG	1 cut(s)	612
EcoT38I	GRGCYC	2 cut(s)	192, 290
ErhI	CCWWGG	1 cut(s)	612
FaeI	CATG	6 cut(s)	166, 184, 233, 386, 732, 749
FatI	CATG	6 cut(s)	162, 180, 229, 382, 728, 745
Fnu4HI	GCNGC	5 cut(s)	55, 405, 653, 690, 798
FokI	GGATG	1 cut(s)	863
FriOI	GRGCYC	2 cut(s)	192, 290
Fsp4HI	GCNGC	5 cut(s)	55, 405, 653, 690, 798
FspBI	CTAG	1 cut(s)	572
GluI	GCNGC	5 cut(s)	55, 405, 653, 690, 798
HaeIII	GGCC	6 cut(s)	17, 110, 228, 288, 354, 472
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	6 cut(s)	166, 184, 233, 386, 732, 749
HinfI	GANTC	4 cut(s)	281, 314, 816, 832
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	2 cut(s)	379, 433
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	3 cut(s)	213, 277, 493
Hpy188III	TCNNGA	1 cut(s)	464
Hpy8I	GTNNAC	1 cut(s)	318
Hpy99I	CGWCG	2 cut(s)	511, 514
HpyAV	CCTTC	3 cut(s)	85, 121, 489
HpyCH4V	TGCA	8 cut(s)	54, 389, 407, 548, 626, 692, 745, 812
HpyF10VI	GCNNNNNNNGC	4 cut(s)	401, 502, 511, 623
HpyF3I	CTNAG	3 cut(s)	149, 276, 492
Hsp92II	CATG	6 cut(s)	166, 184, 233, 386, 732, 749
Kzo9I	GATC	1 cut(s)	488
LmnI	GCTCC	3 cut(s)	145, 207, 252
Lsp1109I	GCAGC	5 cut(s)	66, 391, 664, 676, 809
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	1 cut(s)	572
MaeIII	GTNAC	1 cut(s)	639
MalI	GATC	1 cut(s)	490
MboI	GATC	1 cut(s)	488
MboII	GAAGA	4 cut(s)	25, 269, 520, 697
MfeI	CAATTG	1 cut(s)	693
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	4 cut(s)	192, 249, 290, 607
MlsI	TGGCCA	1 cut(s)	228
MluCI	AATT	9 cut(s)	29, 89, 104, 196, 294, 424, 549, 594, 693
MluNI	TGGCCA	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	2 cut(s)	195, 274
MnlI	CCTC	6 cut(s)	68, 91, 153, 271, 462, 851
Mox20I	TGGCCA	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	228
MseI	TTAA	1 cut(s)	68
MslI	CAYNNNNRTG	1 cut(s)	539
Msp20I	TGGCCA	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	800
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	2 cut(s)	291, 498
MunI	CAATTG	1 cut(s)	693
Mva1269I	GAATGC	3 cut(s)	507, 514, 739
MvaI	CCWGG	2 cut(s)	291, 498
MwoI	GCNNNNNNNGC	4 cut(s)	401, 502, 511, 623
NdeII	GATC	1 cut(s)	488
NlaIII	CATG	6 cut(s)	166, 184, 233, 386, 732, 749
NlaIV	GGNNCC	3 cut(s)	169, 288, 700
NspI	RCATGY	1 cut(s)	184
NspV	TTCGAA	1 cut(s)	775
PaeI	GCATGC	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	472
PctI	GAATGC	3 cut(s)	507, 514, 739
PfeI	GAWTC	3 cut(s)	281, 816, 832
PflMI	CCANNNNNTGG	1 cut(s)	717
PkrI	GCNGC	5 cut(s)	56, 406, 654, 691, 799
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	2 cut(s)	289, 496
PspGI	CCWGG	2 cut(s)	289, 496
PspN4I	GGNNCC	3 cut(s)	169, 288, 700
PspOMI	GGGCCC	1 cut(s)	286
PspPI	GGNCC	2 cut(s)	286, 287
PsuI	RGATCY	1 cut(s)	488
PvuII	CAGCTG	1 cut(s)	800
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
RseI	CAYNNNNRTG	1 cut(s)	539
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	5 cut(s)	55, 405, 653, 690, 798
Sau3AI	GATC	1 cut(s)	488
Sau96I	GGNCC	2 cut(s)	286, 287
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	2 cut(s)	291, 498
SduI	GDGCHC	4 cut(s)	192, 249, 290, 607
SetI	ASST	5 cut(s)	142, 192, 238, 397, 802
SfaNI	GCATC	1 cut(s)	376
SfuI	TTCGAA	1 cut(s)	775
SmiMI	CAYNNNNRTG	1 cut(s)	539
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SphI	GCATGC	1 cut(s)	184
Sse9I	AATT	9 cut(s)	29, 89, 104, 196, 294, 424, 549, 594, 693
SseBI	AGGCCT	1 cut(s)	472
SsiI	CCGC	1 cut(s)	299
SspMI	CTAG	1 cut(s)	572
SstI	GAGCTC	1 cut(s)	192
StuI	AGGCCT	1 cut(s)	472
StyD4I	CCNGG	2 cut(s)	289, 496
StyI	CCWWGG	1 cut(s)	612
TaqI	TCGA	4 cut(s)	101, 312, 328, 775
TaqII	GACCGA	1 cut(s)	870
TasI	AATT	9 cut(s)	29, 89, 104, 196, 294, 424, 549, 594, 693
TfiI	GAWTC	3 cut(s)	281, 816, 832
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TseI	GCWGC	5 cut(s)	54, 404, 652, 689, 797
TspDTI	ATGAA	4 cut(s)	246, 546, 650, 762
Van91I	CCANNNNNTGG	1 cut(s)	717
XapI	RAATTY	2 cut(s)	196, 424
XceI	RCATGY	1 cut(s)	184
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.