Rroxscaffold_6G00391440

Lipid phosphate phosphatase epsilon

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
9489215 .. 9490648
1434 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00391440.1

Sequence Viewer

Length: 300 bp
ATGAGTGATCAAGTTATTTACTACATATTAGGTCTGAATCAAACAGAAATGAAAGAGATATATCGCCTATGCATTTCTTATTATCTGTCTTTGCAGTCATGGATACCAGTCTCACATCGACTTCATACTCTGAGCCAAGTGATTGTGGGTGGTACCCTTGGGACCATTTTCTCCATTCTATGGTACTGGTCATGGAATGTCGCTGTGCAAGAACCATATGTATTTCGCCTTCTGGGTTCAAATAGTTATTTTGGCAGATTGCAAAGCATTTCTTTTATATGTAGTTCGGTATTGGATTAG

Protein Analysis

99

Amino Acids

11.51

Weight (kDa)

6.7

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 152
AccB7I CCANNNNNTGG 1 cut(s) 180
AfaI GTAC 2 cut(s) 154, 185
AfiI CCNNNNNNNGG 1 cut(s) 180
AgsI TTSAA 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 115
Asp718I GGTACC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 162
AvaII GGWCC 1 cut(s) 162
BanI GGYRCC 1 cut(s) 152
BarI GAAGNNNNNNTAC 2 cut(s) 213, 245
BciVI GTATCC 1 cut(s) 96
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 115
BfuI GTATCC 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 2 cut(s) 154, 163
BsaJI CCNNGG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse1I ACTGG 2 cut(s) 107, 191
BseDI CCNNGG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 2 cut(s) 107, 191
BshNI GGYRCC 1 cut(s) 152
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 175
Bsp143I GATC 1 cut(s) 7
BspCNI CTCAG 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 154, 163
BspT107I GGYRCC 1 cut(s) 152
BsrI ACTGG 2 cut(s) 107, 191
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 7
BssT1I CCWWGG 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 131
BstKTI GATC 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 1 cut(s) 7
BsuI GTATCC 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 162
Csp6I GTAC 2 cut(s) 153, 184
CviAII CATG 2 cut(s) 99, 192
CviJI RGCY 1 cut(s) 135
CviKI_1 RGCY 1 cut(s) 135
CviQI GTAC 2 cut(s) 153, 184
DdeI CTNAG 1 cut(s) 131
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 102, 195
FalI AAGNNNNNCTT 2 cut(s) 256, 288
FaqI GGGAC 1 cut(s) 175
FatI CATG 2 cut(s) 98, 191
FauNDI CATATG 1 cut(s) 217
FbaI TGATCA 1 cut(s) 7
Hin1II CATG 2 cut(s) 102, 195
HinfI GANTC 1 cut(s) 37
Hpy188I TCNGA 2 cut(s) 36, 132
HpyAV CCTTC 1 cut(s) 239
HpyCH4V TGCA 4 cut(s) 72, 94, 208, 262
HpyF3I CTNAG 1 cut(s) 131
Hsp92II CATG 2 cut(s) 102, 195
KpnI GGTACC 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 1 cut(s) 7
LpnPI CCDG 3 cut(s) 120, 172, 218
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
Mph1103I ATGCAT 1 cut(s) 74
NdeI CATATG 1 cut(s) 217
NdeII GATC 1 cut(s) 7
NlaIII CATG 2 cut(s) 102, 195
NlaIV GGNNCC 2 cut(s) 154, 163
NsiI ATGCAT 1 cut(s) 74
PfeI GAWTC 1 cut(s) 37
PflMI CCANNNNNTGG 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 154, 163
PspPI GGNCC 1 cut(s) 162
RsaI GTAC 2 cut(s) 154, 185
RsaNI GTAC 2 cut(s) 153, 184
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 1 cut(s) 162
SetI ASST 1 cut(s) 34
SgeI CNNG 9 cut(s) 23, 111, 119, 149, 170, 199, 204, 221, 245
SinI GGWCC 1 cut(s) 162
StyI CCWWGG 1 cut(s) 157
TaqI TCGA 1 cut(s) 118
TfiI GAWTC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 65, 113
Van91I CCANNNNNTGG 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 162
Zsp2I ATGCAT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.