Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002938

Physical Location & Seq

Genomic Coordinates Reverse (-)

12707327 .. 12711067

Gene Structure 3741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG139800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCCGTCTTCTCATTCCCAATCCATCTTCTACATTTTTATGTCTGCAATTTTTTCATATATAATGTGGACTGTGGAGTGCATTACCATAATTATTGGTGCTCTTGCCTTGGCATTTGGTGCATATCTTTCGTGGTTACGAGTTTCGCAGCAACTTCATACGATGAGCCAAGTGATTGTGGGTGCTGCAATTGGAACCATCTTCTCCATTTTGTGGTGCTGGTCATGGAATGCTGTTGTGCATGAAGCATTTACTTCCTTTTTGTGGTCCTCAAGAAAGCTGCAAGATACAGTCATGGCTTCCAGCACCATTGTTGAGCTGATTAATTTGCCTAATGGCGACATAGTGCTTGAACAGGAAAACTATAATTCTGGCCTCCAAACCACTGTTGACCGATTGGGACTAGGGATAAATGTGAACACGCTGACCATGAGTGGATTTGCCTTGGCATTTAATTCATATCTTTCATGGATACCAGTCTCACATCGACTTCATACTCTGAGCCAAGTGATTGTGGGTGGTACCCTTGGGACCATTTTCTCCATTCTATGGTACTGGTCATGGAATGTCGCTGTGCACAAACCATATGTATTTCGACTTCTGGGTTCAAATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

205

Amino Acids

22.94

Weight (kDa)

6.57

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	1 - 75	3.6e-06	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50920 AT3G50920 AT5G66450 AT5G66450 AT5G66450 AT5G66450 AT5G66450
fragaria_vesca	FvH4_1g12790
malus_domestica	MD02G1143500.v1.1 MD15G1256700.v1.1
prunus_persica	Prupe.7G158200_v2.0.a1
pyrus_communis	pycom02g11340 pycom15g22470
rosa_chinensis	RchiOBHm_Chr2g0100911 RchiOBHm_Chr2g0100921 RchiOBHm_Chr2g0100931
rosa_laevigata	RLG00000016993 RLG00000017024 RLG00000017026
rosa_multiflora	Rmu_sc0001659.1_g000048 Rmu_sc0001862.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141740 Rroxscaffold_6G00391440
rosa_rugosa	Rorug02G0093700 Rorug02G0093800 Rorug02G0093800
rosa_samantha	Rh2AG139800 Rh2AG141300 Rh2AG141400 Rh2BG143100 Rh2BG146500 Rh2BG146600 Rh2CG147700 Rh2CG147800 Rh2DG147000 Rh2DG147100
rosa_wichuraiana	Rw2G011080 Rw2G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	521
AccB1I	GGYRCC	1 cut(s)	521
AccB7I	CCANNNNNTGG	2 cut(s)	213, 549
AfaI	GTAC	2 cut(s)	523, 554
AfiI	CCNNNNNNNGG	3 cut(s)	213, 264, 549
AgsI	TTSAA	2 cut(s)	353, 609
AluBI	AGCT	2 cut(s)	280, 319
AluI	AGCT	2 cut(s)	280, 319
Alw21I	GWGCWC	2 cut(s)	103, 579
Alw26I	GTCTC	1 cut(s)	484
Alw44I	GTGCAC	1 cut(s)	575
AoxI	GGCC	1 cut(s)	373
ApaLI	GTGCAC	1 cut(s)	575
ApeKI	GCWGC	3 cut(s)	148, 185, 280
AseI	ATTAAT	1 cut(s)	324
Asp718I	GGTACC	1 cut(s)	521
AspS9I	GGNCC	2 cut(s)	267, 531
AvaII	GGWCC	2 cut(s)	267, 531
BaeGI	GKGCMC	1 cut(s)	579
BanI	GGYRCC	1 cut(s)	521
BarI	GAAGNNNNNNTAC	2 cut(s)	582, 614
Bbv12I	GWGCWC	2 cut(s)	103, 579
BbvI	GCAGC	3 cut(s)	160, 172, 267
BccI	CCATC	2 cut(s)	32, 206
BcgI	CGANNNNNNTGC	2 cut(s)	111, 145
BciVI	GTATCC	1 cut(s)	465
BcoDI	GTCTC	1 cut(s)	484
BfaI	CTAG	1 cut(s)	404
BfuI	GTATCC	1 cut(s)	465
BisI	GCNGC	3 cut(s)	149, 186, 281
BlsI	GCNGC	3 cut(s)	150, 187, 282
Bme18I	GGWCC	2 cut(s)	267, 531
BmgT120I	GGNCC	2 cut(s)	267, 531
BmiI	GGNNCC	3 cut(s)	196, 523, 532
BpuEI	CTTGAG	1 cut(s)	256
BsaJI	CCNNGG	3 cut(s)	108, 444, 526
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 264, 549
Bse1I	ACTGG	2 cut(s)	476, 560
BseDI	CCNNGG	3 cut(s)	108, 444, 526
BseLI	CCNNNNNNNGG	3 cut(s)	213, 264, 549
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	2 cut(s)	476, 560
BseSI	GKGCMC	1 cut(s)	579
BseXI	GCAGC	3 cut(s)	160, 172, 267
BshFI	GGCC	1 cut(s)	375
BshNI	GGYRCC	1 cut(s)	521
BsiHKAI	GWGCWC	2 cut(s)	103, 579
BslFI	GGGAC	2 cut(s)	414, 544
BslI	CCNNNNNNNGG	3 cut(s)	213, 264, 549
BsmAI	GTCTC	1 cut(s)	484
BsmFI	GGGAC	2 cut(s)	414, 544
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	375
Bsp1286I	GDGCHC	2 cut(s)	103, 579
BspANI	GGCC	1 cut(s)	375
BspCNI	CTCAG	1 cut(s)	492
BspLI	GGNNCC	3 cut(s)	196, 523, 532
BspT107I	GGYRCC	1 cut(s)	521
BsrI	ACTGG	2 cut(s)	476, 560
BssECI	CCNNGG	3 cut(s)	108, 444, 526
BssT1I	CCWWGG	3 cut(s)	108, 444, 526
Bst4CI	ACNGT	3 cut(s)	73, 292, 388
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstDEI	CTNAG	1 cut(s)	500
BstMAI	GTCTC	1 cut(s)	484
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstSLI	GKGCMC	1 cut(s)	579
BstV1I	GCAGC	3 cut(s)	160, 172, 267
BsuI	GTATCC	1 cut(s)	465
BsuRI	GGCC	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	384
Cfr13I	GGNCC	2 cut(s)	267, 531
Csp6I	GTAC	2 cut(s)	522, 553
CviAII	CATG	6 cut(s)	225, 242, 295, 430, 468, 561
CviJI	RGCY	6 cut(s)	168, 280, 299, 319, 375, 504
CviKI_1	RGCY	6 cut(s)	168, 280, 299, 319, 375, 504
CviQI	GTAC	2 cut(s)	522, 553
DdeI	CTNAG	1 cut(s)	500
Eco130I	CCWWGG	3 cut(s)	108, 444, 526
Eco47I	GGWCC	2 cut(s)	267, 531
EcoT14I	CCWWGG	3 cut(s)	108, 444, 526
ErhI	CCWWGG	3 cut(s)	108, 444, 526
FaeI	CATG	6 cut(s)	228, 245, 298, 433, 471, 564
FaqI	GGGAC	2 cut(s)	414, 544
FatI	CATG	6 cut(s)	224, 241, 294, 429, 467, 560
FauNDI	CATATG	1 cut(s)	586
Fnu4HI	GCNGC	3 cut(s)	149, 186, 281
Fsp4HI	GCNGC	3 cut(s)	149, 186, 281
FspBI	CTAG	1 cut(s)	404
GluI	GCNGC	3 cut(s)	149, 186, 281
HaeIII	GGCC	1 cut(s)	375
Hin1II	CATG	6 cut(s)	228, 245, 298, 433, 471, 564
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
Hpy166II	GTNNAC	4 cut(s)	69, 391, 418, 577
Hpy188I	TCNGA	1 cut(s)	501
Hpy188III	TCNNGA	1 cut(s)	273
Hpy8I	GTNNAC	4 cut(s)	69, 391, 418, 577
HpyCH4III	ACNGT	3 cut(s)	73, 292, 388
HpyCH4V	TGCA	7 cut(s)	47, 81, 122, 188, 241, 283, 577
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	500
Hsp92II	CATG	6 cut(s)	228, 245, 298, 433, 471, 564
KpnI	GGTACC	1 cut(s)	525
LpnPI	CCDG	7 cut(s)	205, 316, 341, 357, 489, 541, 587
Lsp1109I	GCAGC	3 cut(s)	160, 172, 267
MaeI	CTAG	1 cut(s)	404
MaeIII	GTNAC	1 cut(s)	135
MboII	GAAGA	2 cut(s)	19, 193
MfeI	CAATTG	1 cut(s)	189
MhlI	GDGCHC	2 cut(s)	103, 579
MluCI	AATT	6 cut(s)	48, 90, 189, 325, 367, 454
MnlI	CCTC	2 cut(s)	280, 386
MseI	TTAA	2 cut(s)	324, 453
MslI	CAYNNNNRTG	1 cut(s)	38
MunI	CAATTG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeI	CATATG	1 cut(s)	586
NlaIII	CATG	6 cut(s)	228, 245, 298, 433, 471, 564
NlaIV	GGNNCC	3 cut(s)	196, 523, 532
PctI	GAATGC	1 cut(s)	235
PflMI	CCANNNNNTGG	2 cut(s)	213, 549
PkrI	GCNGC	3 cut(s)	150, 187, 282
PshBI	ATTAAT	1 cut(s)	324
PspN4I	GGNNCC	3 cut(s)	196, 523, 532
PspPI	GGNCC	2 cut(s)	267, 531
RsaI	GTAC	2 cut(s)	523, 554
RsaNI	GTAC	2 cut(s)	522, 553
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	324, 453
SatI	GCNGC	3 cut(s)	149, 186, 281
Sau96I	GGNCC	2 cut(s)	267, 531
SduI	GDGCHC	2 cut(s)	103, 579
SetI	ASST	2 cut(s)	282, 321
SinI	GGWCC	2 cut(s)	267, 531
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	6 cut(s)	48, 90, 189, 325, 367, 454
SspMI	CTAG	1 cut(s)	404
StyI	CCWWGG	3 cut(s)	108, 444, 526
TaaI	ACNGT	3 cut(s)	73, 292, 388
TaqI	TCGA	2 cut(s)	487, 595
TaqII	GACCGA	1 cut(s)	408
TasI	AATT	6 cut(s)	48, 90, 189, 325, 367, 454
Tru1I	TTAA	2 cut(s)	324, 453
Tru9I	TTAA	2 cut(s)	324, 453
TscAI	CASTG	1 cut(s)	391
TseI	GCWGC	3 cut(s)	148, 185, 280
TspDTI	ATGAA	6 cut(s)	45, 146, 258, 447, 456, 482
TspRI	CASTG	1 cut(s)	391
Van91I	CCANNNNNTGG	2 cut(s)	213, 549
VneI	GTGCAC	1 cut(s)	575
VpaK11BI	GGWCC	2 cut(s)	267, 531
VspI	ATTAAT	1 cut(s)	324
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.