Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002938

Physical Location & Seq

Genomic Coordinates Forward (+)

11259515 .. 11260512

Gene Structure 998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G011090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCTTCCAGCATCATTGTTGAGCTGATTAATTTGCCTAATGGCGACATAGTGCTTGAACAGAAAAACTATAATTCTGGCCTCGAAACCACTGTTGACCGATTGAGCAAGTGGCTGTACCTGGACTTTTTGCTGTTGGAATACTATGTAGGCATGATGCAGAAGCTATGTGGGCTGCCGTGGGTGCCGTCTTTGCATGCGCAATCTATCTTCTACATTGTTATATTTGCCATTTCTTCAGTTGTGCATTCTCTAGGGATAAATGTGATAACGCTGACCATGAGTGGATTTGCCTTGGCATTTATCTCATATCTTGTAAGTGTTCCATGTTTTTCTGCTTTTGGTTTGAATCACCATAAATACTCGATGAGTGATCTAGTTCGACATAAAACAAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

133

Amino Acids

14.98

Weight (kDa)

6.49

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50920 AT3G50920 AT5G66450 AT5G66450 AT5G66450 AT5G66450 AT5G66450
fragaria_vesca	FvH4_1g12790
malus_domestica	MD02G1143500.v1.1 MD15G1256700.v1.1
prunus_persica	Prupe.7G158200_v2.0.a1
pyrus_communis	pycom02g11340 pycom15g22470
rosa_chinensis	RchiOBHm_Chr2g0100911 RchiOBHm_Chr2g0100921 RchiOBHm_Chr2g0100931
rosa_laevigata	RLG00000016993 RLG00000017024 RLG00000017026
rosa_multiflora	Rmu_sc0001659.1_g000048 Rmu_sc0001862.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141740 Rroxscaffold_6G00391440
rosa_rugosa	Rorug02G0093700 Rorug02G0093800 Rorug02G0093800
rosa_samantha	Rh2AG139800 Rh2AG141300 Rh2AG141400 Rh2BG143100 Rh2BG146500 Rh2BG146600 Rh2CG147700 Rh2CG147800 Rh2DG147000 Rh2DG147100
rosa_wichuraiana	Rw2G011080 Rw2G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	59, 349
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	2 cut(s)	25, 166
AluI	AGCT	2 cut(s)	25, 166
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	175
AseI	ATTAAT	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	202
AsuHPI	GGTGA	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	162
BceAI	ACGGC	2 cut(s)	163, 172
BciT130I	CCWGG	1 cut(s)	122
BfaI	CTAG	2 cut(s)	254, 377
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
Bme1390I	CCNGG	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	2 cut(s)	21, 147
BsaJI	CCNNGG	2 cut(s)	179, 294
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	179, 294
BseXI	GCAGC	1 cut(s)	162
BshFI	GGCC	1 cut(s)	81
BshNI	GGYRCC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	373
BspANI	GGCC	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	186
BspT107I	GGYRCC	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	179, 294
BssMI	GATC	1 cut(s)	373
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	198
BstDSI	CCRYGG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	1 cut(s)	376
BstMBI	GATC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 184, 193
BstNI	CCWGG	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	179
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	198
CfoI	GCGC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	4 cut(s)	154, 197, 280, 327
CviJI	RGCY	6 cut(s)	5, 25, 81, 115, 166, 175
CviKI_1	RGCY	6 cut(s)	5, 25, 81, 115, 166, 175
CviQI	GTAC	1 cut(s)	118
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	4 cut(s)	157, 200, 283, 330
FatI	CATG	4 cut(s)	153, 196, 279, 326
Fnu4HI	GCNGC	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	176
FspBI	CTAG	2 cut(s)	254, 377
FspI	TGCGCA	1 cut(s)	201
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	81
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	4 cut(s)	157, 200, 283, 330
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	1 cut(s)	349
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	97
Hpy8I	GTNNAC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	3 cut(s)	160, 196, 247
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 184, 193
Hsp92II	CATG	4 cut(s)	157, 200, 283, 330
HspAI	GCGC	1 cut(s)	200
Kzo9I	GATC	1 cut(s)	373
LpnPI	CCDG	4 cut(s)	22, 63, 107, 134
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	2 cut(s)	21, 147
MaeI	CTAG	2 cut(s)	254, 377
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	2 cut(s)	202, 228
MluCI	AATT	2 cut(s)	31, 73
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	1 cut(s)	92
MseI	TTAA	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	3 cut(s)	172, 184, 193
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	4 cut(s)	157, 200, 283, 330
NlaIV	GGNNCC	1 cut(s)	186
NsbI	TGCGCA	1 cut(s)	201
NspI	RCATGY	1 cut(s)	200
PaeI	GCATGC	1 cut(s)	200
PctI	GAATGC	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	177
PshBI	ATTAAT	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	186
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	3 cut(s)	27, 123, 168
SfaNI	GCATC	2 cut(s)	21, 147
SphI	GCATGC	1 cut(s)	200
Sse9I	AATT	2 cut(s)	31, 73
SspMI	CTAG	2 cut(s)	254, 377
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	94
TaqI	TCGA	3 cut(s)	84, 365, 382
TaqII	GACCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	31, 73
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	1 cut(s)	175
TspRI	CASTG	1 cut(s)	97
VspI	ATTAAT	1 cut(s)	30
XceI	RCATGY	1 cut(s)	200
XspI	CTAG	2 cut(s)	254, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.