Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002938

Physical Location & Seq

Genomic Coordinates Forward (+)

7683365 .. 7687334

Gene Structure 3970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0093700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCTCTGAAACATTTGCTAACCTCATGTTCAGGCTTTGTTTTAGCTTGTTTGCTTGCATTCACAGTTCAAGTCTACTTGTTCTCATCAATATCCCCAGTCTCACTTGAACTGCCTCCACCATCTTCTTCTCCACTTCCTCAAAACAACATATTACAGAGAGTGATTAAGCTTGGAGATGGAGTACTTCTGAAACCAGAAGATATTGCTTTGGATAAAGAAGGCACACTCTACACGGCCACTAGAGATGGTTGGATCAAAAGGCTTCACAGAAATGGGTCCTGGGAGGATTGGAAGATGTTGAATAGTCATACACTTCTTGGAATTACTATCACAAACGAAGGTGATCTTGTTGCATGTGATGTTGATCAGGGTCTGCTTAAGGTTACTGAAAATGGTGTCACGGTTCTTGCTTCACACGTTAATGGGTCCAAAATAAGATTTGCAGATGATGTGATTGAAGCTTCAGATGGGAGTCTATACTTTAGTGTTGCAAGCACCAAATTTGGACTCCATAATTGGTATCTGGATGTGCTTGAGGCAAAACCACATGGGCAGCTGCTCAAGTATGACCCTTCATCAAATGAGACTTCAATTTTACTTGAGGGTTTGGGTTTTGCTAATGGGGTTGCAGTTTCAGAAGACCAGGATTATCTGGTGGTCTGCGAAACATGGAAATTCAGGTGCCTAAGGTATTGGCTTAAGGGAGAGAAGAGAGGGCAGACGGAGATCTTCATTGAGAACCTTCCCGGTGCACCGGACAACATCAATCTTGCTCCGGATGGGTCTTTCTGGATTGCTCTGCTTAAGTTGACTTCAGACGGGCTGGAGTTTGTGCACAGATCCAGAGCAGCAAAACACTTGATAGCAACATCTGGGAAATTAGTAGAACTAGTCGGTGGATTACATAAGAAAGCTACGGTGGTGAATGTGGGAGCTGATGGCAAGATAATCAAGAAGCTCGAGGATCCTAATGGAAGTGTGATGTCGTTTGTGACATCGGCTGTGGAATTTGACAACCATCTCTACTTGGGGAGCTTGCAGAACAACTTCATTGGCAAGTTGCCACTGAATGTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

360

Amino Acids

39.39

Weight (kDa)

5.82

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSL_N	PF20067	47 - 89	4.2e-09	Strictosidine synthase-like, N-terminal
SGL	PF08450	102 - 269	4.3e-11	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	154 - 237	5.9e-25	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50920 AT3G50920 AT5G66450 AT5G66450 AT5G66450 AT5G66450 AT5G66450
fragaria_vesca	FvH4_1g12790
malus_domestica	MD02G1143500.v1.1 MD15G1256700.v1.1
prunus_persica	Prupe.7G158200_v2.0.a1
pyrus_communis	pycom02g11340 pycom15g22470
rosa_chinensis	RchiOBHm_Chr2g0100911 RchiOBHm_Chr2g0100921 RchiOBHm_Chr2g0100931
rosa_laevigata	RLG00000016993 RLG00000017024 RLG00000017026
rosa_multiflora	Rmu_sc0001659.1_g000048 Rmu_sc0001862.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141740 Rroxscaffold_6G00391440
rosa_rugosa	Rorug02G0093700 Rorug02G0093800 Rorug02G0093800
rosa_samantha	Rh2AG139800 Rh2AG141300 Rh2AG141400 Rh2BG143100 Rh2BG146500 Rh2BG146600 Rh2CG147700 Rh2CG147800 Rh2DG147000 Rh2DG147100
rosa_wichuraiana	Rw2G011080 Rw2G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	684
AccI	GTMKAC	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	778
AclWI	GGATC	4 cut(s)	263, 837, 962, 975
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	3 cut(s)	503, 677, 1010
AcuI	CTGAAG	2 cut(s)	450, 801
AfaI	GTAC	1 cut(s)	186
AflII	CTTAAG	3 cut(s)	380, 701, 806
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	5 cut(s)	71, 110, 304, 461, 594
AhlI	ACTAGT	1 cut(s)	892
AjnI	CCWGG	2 cut(s)	281, 645
AluBI	AGCT	8 cut(s)	47, 172, 464, 559, 917, 938, 961, 1038
AluI	AGCT	8 cut(s)	47, 172, 464, 559, 917, 938, 961, 1038
Alw21I	GWGCWC	2 cut(s)	757, 840
Alw26I	GTCTC	2 cut(s)	106, 581
Alw44I	GTGCAC	2 cut(s)	753, 836
AlwI	GGATC	4 cut(s)	263, 837, 962, 975
AlwNI	CAGNNNCTG	1 cut(s)	376
Ama87I	CYCGRG	1 cut(s)	962
Aor13HI	TCCGGA	1 cut(s)	778
AoxI	GGCC	1 cut(s)	237
ApaLI	GTGCAC	2 cut(s)	753, 836
ApeKI	GCWGC	3 cut(s)	556, 559, 851
ApoI	RAATTY	3 cut(s)	503, 677, 1010
Asp700I	GAANNNNTTC	1 cut(s)	1049
AspS9I	GGNCC	2 cut(s)	279, 429
AsuC2I	CCSGG	1 cut(s)	750
AsuHPI	GGTGA	2 cut(s)	356, 937
AvaI	CYCGRG	1 cut(s)	962
AvaII	GGWCC	2 cut(s)	279, 429
AxyI	CCTNAGG	1 cut(s)	689
BaeGI	GKGCMC	2 cut(s)	757, 840
BamHI	GGATCC	1 cut(s)	967
BanI	GGYRCC	1 cut(s)	684
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	2 cut(s)	757, 840
BbvI	GCAGC	3 cut(s)	546, 568, 863
BccI	CCATC	7 cut(s)	130, 173, 242, 464, 776, 935, 1029
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	2 cut(s)	283, 647
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	750
BcoDI	GTCTC	2 cut(s)	106, 581
BcuI	ACTAGT	1 cut(s)	892
BfaI	CTAG	2 cut(s)	243, 893
BfrI	CTTAAG	3 cut(s)	380, 701, 806
BglII	AGATCT	1 cut(s)	729
BisI	GCNGC	3 cut(s)	557, 560, 852
BlsI	GCNGC	3 cut(s)	558, 561, 853
BmcAI	AGTACT	1 cut(s)	186
Bme1390I	CCNGG	3 cut(s)	283, 647, 750
Bme18I	GGWCC	2 cut(s)	279, 429
BmeT110I	CYCGRG	1 cut(s)	962
BmgT120I	GGNCC	2 cut(s)	279, 429
BmiI	GGNNCC	4 cut(s)	280, 430, 686, 969
BmrFI	CCNGG	3 cut(s)	283, 647, 750
BmrI	ACTGGG	1 cut(s)	92
BmuI	ACTGGG	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	648
BpmI	CTGGAG	1 cut(s)	848
BpuEI	CTTGAG	3 cut(s)	548, 557, 623
BpuMI	CCSGG	1 cut(s)	750
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	282
BsaWI	WCCGGW	2 cut(s)	757, 778
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bse1I	ACTGG	1 cut(s)	98
Bse21I	CCTNAGG	1 cut(s)	689
Bse8I	GATNNNNATC	1 cut(s)	366
BseAI	TCCGGA	1 cut(s)	778
BseBI	CCWGG	2 cut(s)	283, 647
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	2 cut(s)	535, 787
BseJI	GATNNNNATC	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	98
BseSI	GKGCMC	2 cut(s)	757, 840
BseXI	GCAGC	3 cut(s)	546, 568, 863
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	684
BsiHKAI	GWGCWC	2 cut(s)	757, 840
BsiHKCI	CYCGRG	1 cut(s)	962
BsiSI	CCGG	3 cut(s)	750, 758, 779
BsmAI	GTCTC	2 cut(s)	106, 581
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	962
Bsp1286I	GDGCHC	2 cut(s)	757, 840
Bsp13I	TCCGGA	1 cut(s)	778
Bsp143I	GATC	6 cut(s)	255, 346, 367, 729, 842, 967
BspANI	GGCC	1 cut(s)	239
BspEI	TCCGGA	1 cut(s)	778
BspLI	GGNNCC	4 cut(s)	280, 430, 686, 969
BspPI	GGATC	4 cut(s)	263, 837, 962, 975
BspT107I	GGYRCC	1 cut(s)	684
BspTI	CTTAAG	3 cut(s)	380, 701, 806
BsrI	ACTGG	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	6 cut(s)	255, 346, 367, 729, 842, 967
Bst2UI	CCWGG	2 cut(s)	283, 647
Bst4CI	ACNGT	3 cut(s)	67, 406, 922
Bst6I	CTCTTC	1 cut(s)	707
BstAFI	CTTAAG	3 cut(s)	380, 701, 806
BstC8I	GCNNGC	3 cut(s)	57, 496, 1040
BstDEI	CTNAG	1 cut(s)	689
BstF5I	GGATG	2 cut(s)	535, 787
BstKTI	GATC	6 cut(s)	258, 349, 370, 732, 845, 970
BstMAI	GTCTC	2 cut(s)	106, 581
BstMBI	GATC	6 cut(s)	255, 346, 367, 729, 842, 967
BstNI	CCWGG	2 cut(s)	283, 647
BstNSI	RCATGY	1 cut(s)	360
BstSCI	CCNGG	3 cut(s)	281, 645, 748
BstSLI	GKGCMC	2 cut(s)	757, 840
BstV1I	GCAGC	3 cut(s)	546, 568, 863
BstV2I	GAAGAC	1 cut(s)	648
BstX2I	RGATCY	3 cut(s)	729, 842, 967
BstYI	RGATCY	3 cut(s)	729, 842, 967
Bsu36I	CCTNAGG	1 cut(s)	689
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	2 cut(s)	535, 787
BtsIMutI	CAGTG	1 cut(s)	1067
Cac8I	GCNNGC	3 cut(s)	57, 496, 1040
CaiI	CAGNNNCTG	1 cut(s)	376
Cfr13I	GGNCC	2 cut(s)	279, 429
Csp6I	GTAC	1 cut(s)	185
CviAII	CATG	4 cut(s)	27, 357, 551, 672
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	689
DpnI	GATC	6 cut(s)	257, 348, 369, 731, 844, 969
DpnII	GATC	6 cut(s)	255, 346, 367, 729, 842, 967
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	707
EarI	CTCTTC	1 cut(s)	707
Eco47I	GGWCC	2 cut(s)	279, 429
Eco57I	CTGAAG	2 cut(s)	450, 801
Eco81I	CCTNAGG	1 cut(s)	689
Eco88I	CYCGRG	1 cut(s)	962
EcoO109I	RGGNCCY	1 cut(s)	279
EcoRII	CCWGG	2 cut(s)	281, 645
FaeI	CATG	4 cut(s)	30, 360, 554, 675
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FatI	CATG	4 cut(s)	26, 356, 550, 671
FbaI	TGATCA	1 cut(s)	367
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	3 cut(s)	557, 560, 852
FokI	GGATG	2 cut(s)	542, 794
Fsp4HI	GCNGC	3 cut(s)	557, 560, 852
FspBI	CTAG	2 cut(s)	243, 893
GluI	GCNGC	3 cut(s)	557, 560, 852
GsuI	CTGGAG	1 cut(s)	848
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	3 cut(s)	750, 758, 779
Hin1II	CATG	4 cut(s)	30, 360, 554, 675
HincII	GTYRAC	1 cut(s)	813
HindII	GTYRAC	1 cut(s)	813
HindIII	AAGCTT	2 cut(s)	170, 462
HinfI	GANTC	2 cut(s)	475, 510
HpaII	CCGG	3 cut(s)	750, 758, 779
HphI	GGTGA	2 cut(s)	356, 937
Hpy166II	GTNNAC	4 cut(s)	76, 755, 813, 838
Hpy188I	TCNGA	5 cut(s)	9, 192, 469, 640, 820
Hpy188III	TCNNGA	5 cut(s)	527, 779, 793, 846, 955
Hpy8I	GTNNAC	4 cut(s)	76, 755, 813, 838
HpyAV	CCTTC	4 cut(s)	215, 335, 585, 755
HpyCH4III	ACNGT	3 cut(s)	67, 406, 922
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	9 cut(s)	59, 356, 446, 494, 632, 755, 838, 1042, 1079
HpyF3I	CTNAG	1 cut(s)	689
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	4 cut(s)	30, 360, 554, 675
Kpn2I	TCCGGA	1 cut(s)	778
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	6 cut(s)	255, 346, 367, 729, 842, 967
LmnI	GCTCC	3 cut(s)	781, 935, 1035
Lsp1109I	GCAGC	3 cut(s)	546, 568, 863
MaeI	CTAG	2 cut(s)	243, 893
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	3 cut(s)	385, 400, 994
MalI	GATC	6 cut(s)	257, 348, 369, 731, 844, 969
MboI	GATC	6 cut(s)	255, 346, 367, 729, 842, 967
MboII	GAAGA	7 cut(s)	117, 120, 212, 307, 653, 724, 724
MflI	RGATCY	3 cut(s)	729, 842, 967
MhlI	GDGCHC	2 cut(s)	757, 840
MluCI	AATT	7 cut(s)	324, 503, 517, 594, 677, 881, 1010
MlyI	GAGTC	2 cut(s)	484, 504
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	8 cut(s)	34, 126, 150, 280, 532, 598, 710, 958
MroI	TCCGGA	1 cut(s)	778
MroXI	GAANNNNTTC	1 cut(s)	1049
MseI	TTAA	5 cut(s)	168, 381, 423, 702, 807
MslI	CAYNNNNRTG	2 cut(s)	273, 423
MspA1I	CMGCKG	1 cut(s)	559
MspCI	CTTAAG	3 cut(s)	380, 701, 806
MspI	CCGG	3 cut(s)	750, 758, 779
MspR9I	CCNGG	3 cut(s)	283, 647, 750
Mva1269I	GAATGC	1 cut(s)	59
MvaI	CCWGG	2 cut(s)	283, 647
NciI	CCSGG	1 cut(s)	750
NdeII	GATC	6 cut(s)	255, 346, 367, 729, 842, 967
NlaIII	CATG	4 cut(s)	30, 360, 554, 675
NlaIV	GGNNCC	4 cut(s)	280, 430, 686, 969
NmuCI	GTSAC	2 cut(s)	400, 994
NspI	RCATGY	1 cut(s)	360
PaeR7I	CTCGAG	1 cut(s)	962
PctI	GAATGC	1 cut(s)	59
PdmI	GAANNNNTTC	1 cut(s)	1049
PkrI	GCNGC	3 cut(s)	558, 561, 853
PleI	GAGTC	2 cut(s)	483, 504
PpsI	GAGTC	2 cut(s)	483, 504
PpuMI	RGGWCCY	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	279
Psp6I	CCWGG	2 cut(s)	281, 645
PspGI	CCWGG	2 cut(s)	281, 645
PspN4I	GGNNCC	4 cut(s)	280, 430, 686, 969
PspPI	GGNCC	2 cut(s)	279, 429
PspPPI	RGGWCCY	1 cut(s)	279
PspXI	VCTCGAGB	1 cut(s)	962
PstNI	CAGNNNCTG	1 cut(s)	376
PsuI	RGATCY	3 cut(s)	729, 842, 967
PvuII	CAGCTG	1 cut(s)	559
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
RseI	CAYNNNNRTG	2 cut(s)	273, 423
SaqAI	TTAA	5 cut(s)	168, 381, 423, 702, 807
SatI	GCNGC	3 cut(s)	557, 560, 852
Sau3AI	GATC	6 cut(s)	255, 346, 367, 729, 842, 967
Sau96I	GGNCC	2 cut(s)	279, 429
ScaI	AGTACT	1 cut(s)	186
SchI	GAGTC	2 cut(s)	484, 504
ScrFI	CCNGG	3 cut(s)	283, 647, 750
SduI	GDGCHC	2 cut(s)	757, 840
Sfr274I	CTCGAG	1 cut(s)	962
SinI	GGWCC	2 cut(s)	279, 429
SlaI	CTCGAG	1 cut(s)	962
SmiMI	CAYNNNNRTG	2 cut(s)	273, 423
SmlI	CTYRAG	7 cut(s)	380, 536, 563, 602, 701, 806, 962
SmoI	CTYRAG	7 cut(s)	380, 536, 563, 602, 701, 806, 962
SpeI	ACTAGT	1 cut(s)	892
Sse9I	AATT	7 cut(s)	324, 503, 517, 594, 677, 881, 1010
SspMI	CTAG	2 cut(s)	243, 893
StyD4I	CCNGG	3 cut(s)	281, 645, 748
TaaI	ACNGT	3 cut(s)	67, 406, 922
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	1 cut(s)	963
TasI	AATT	7 cut(s)	324, 503, 517, 594, 677, 881, 1010
TatI	WGTACW	1 cut(s)	184
Tru1I	TTAA	5 cut(s)	168, 381, 423, 702, 807
Tru9I	TTAA	5 cut(s)	168, 381, 423, 702, 807
TscAI	CASTG	1 cut(s)	1074
TseFI	GTSAC	2 cut(s)	400, 994
TseI	GCWGC	3 cut(s)	556, 559, 851
Tsp45I	GTSAC	2 cut(s)	400, 994
TspDTI	ATGAA	3 cut(s)	567, 724, 1042
TspGWI	ACGGA	1 cut(s)	740
TspRI	CASTG	1 cut(s)	1074
Vha464I	CTTAAG	3 cut(s)	380, 701, 806
VneI	GTGCAC	2 cut(s)	753, 836
VpaK11BI	GGWCC	2 cut(s)	279, 429
XapI	RAATTY	3 cut(s)	503, 677, 1010
XceI	RCATGY	1 cut(s)	360
XhoI	CTCGAG	1 cut(s)	962
XmiI	GTMKAC	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	1049
XspI	CTAG	2 cut(s)	243, 893
ZrmI	AGTACT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.