Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002938

Physical Location & Seq

Genomic Coordinates Forward (+)

8038510 .. 8039890

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g11340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCCATCATCAGCAGCCACCAATTTTTTCCACCACCCAAACCTCAGAATCTTCCCCCGCCGTTCTTATCGGCTCAAATCTCTGAAACCCATTTCTTCTTTTCCCAGATTTCCCGCCAAAAAACTGGATTTCTCAGGTGGATTCGTCCCCAAGAAAGCTGTTTCGGGGCCGAGGAGCAGAGTCATGGCTTCGAATTCCATGGTTGAGATGATAAAGATGCTGCCTTCTCGAAACGCCGACGGCGAAGACGGCGGCGGAGAGATTCAACCTGAAGATTACATTGATGGTTCTTCAGAGTTGAGTCCTTTGATTGTGGATAATGGGTTGGAATCGAAACTCAATCGACTGAGCAAGTGGATTATATCTGCCCTTTTTGCTGTGGTGATTCTGTGGAGGCATGATGGAGAAGCCCTGTGGGCTGCAATGGGGTCTGTTGCAAATTCAATCCTATCCGTTATACTCAAAAGGATACTGAACCAGGAGAGGCCAATTCAGTCGTTGATCGATCGGAGCCTGGAATGCCTTCTTCCCACGCACAATCCATCTTCTACATCGTTACGTTCACGATTTGGTCAATTGTGGAATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

197

Amino Acids

21.79

Weight (kDa)

9.99

Isoelectric Point (pI)

62.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50920 AT3G50920 AT5G66450 AT5G66450 AT5G66450 AT5G66450 AT5G66450
fragaria_vesca	FvH4_1g12790
malus_domestica	MD02G1143500.v1.1 MD15G1256700.v1.1
prunus_persica	Prupe.7G158200_v2.0.a1
pyrus_communis	pycom02g11340 pycom15g22470
rosa_chinensis	RchiOBHm_Chr2g0100911 RchiOBHm_Chr2g0100921 RchiOBHm_Chr2g0100931
rosa_laevigata	RLG00000016993 RLG00000017024 RLG00000017026
rosa_multiflora	Rmu_sc0001659.1_g000048 Rmu_sc0001862.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141740 Rroxscaffold_6G00391440
rosa_rugosa	Rorug02G0093700 Rorug02G0093800 Rorug02G0093800
rosa_samantha	Rh2AG139800 Rh2AG141300 Rh2AG141400 Rh2BG143100 Rh2BG146500 Rh2BG146600 Rh2CG147700 Rh2CG147800 Rh2DG147000 Rh2DG147100
rosa_wichuraiana	Rw2G011080 Rw2G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	58, 114, 252, 255
AcsI	RAATTY	2 cut(s)	193, 439
AcuI	CTGAAG	2 cut(s)	276, 291
AgsI	TTSAA	2 cut(s)	266, 444
AjnI	CCWGG	2 cut(s)	477, 513
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
AoxI	GGCC	2 cut(s)	167, 485
ApeKI	GCWGC	3 cut(s)	14, 220, 419
ApoI	RAATTY	2 cut(s)	193, 439
Asp700I	GAANNNNTTC	1 cut(s)	522
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	394
AsuII	TTCGAA	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	26, 207, 406
BccI	CCATC	4 cut(s)	13, 278, 395, 550
BceAI	ACGGC	3 cut(s)	45, 256, 265
BciT130I	CCWGG	2 cut(s)	479, 515
BciVI	GTATCC	1 cut(s)	462
BfaI	CTAG	1 cut(s)	589
BfuI	GTATCC	1 cut(s)	462
BglI	GCCNNNNNGGC	1 cut(s)	416
BisI	GCNGC	4 cut(s)	15, 221, 253, 420
BlsI	GCNGC	4 cut(s)	16, 222, 254, 421
Bme1390I	CCNGG	2 cut(s)	479, 515
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	2 cut(s)	168, 512
BmrFI	CCNGG	2 cut(s)	479, 515
BmsI	GCATC	1 cut(s)	207
BpiI	GAAGAC	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	504
BsaJI	CCNNGG	2 cut(s)	170, 198
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	2 cut(s)	479, 515
BseCI	ATCGAT	1 cut(s)	504
BseDI	CCNNGG	2 cut(s)	170, 198
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	3 cut(s)	58, 147, 338
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	187
BseXI	GCAGC	3 cut(s)	26, 207, 406
Bsh1285I	CGRYCG	1 cut(s)	508
BshFI	GGCC	2 cut(s)	169, 487
BshVI	ATCGAT	1 cut(s)	504
BsiEI	CGRYCG	1 cut(s)	508
BslFI	GGGAC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	524
BsnI	GGCC	2 cut(s)	169, 487
Bsp119I	TTCGAA	1 cut(s)	191
Bsp143I	GATC	2 cut(s)	501, 505
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	4 cut(s)	58, 114, 252, 255
BspANI	GGCC	2 cut(s)	169, 487
BspCNI	CTCAG	3 cut(s)	57, 146, 339
BspDI	ATCGAT	1 cut(s)	504
BspLI	GGNNCC	2 cut(s)	168, 512
BspT104I	TTCGAA	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	170, 198
BssMI	GATC	2 cut(s)	501, 505
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	2 cut(s)	479, 515
BstBI	TTCGAA	1 cut(s)	191
BstDEI	CTNAG	3 cut(s)	44, 133, 347
BstDSI	CCRYGG	1 cut(s)	198
BstKTI	GATC	2 cut(s)	504, 508
BstMBI	GATC	2 cut(s)	501, 505
BstMCI	CGRYCG	1 cut(s)	508
BstMWI	GCNNNNNNNGC	4 cut(s)	249, 374, 416, 519
BstNI	CCWGG	2 cut(s)	479, 515
BstSCI	CCNGG	2 cut(s)	477, 513
BstV1I	GCAGC	3 cut(s)	26, 207, 406
BstV2I	GAAGAC	1 cut(s)	252
BstXI	CCANNNNNNTGG	1 cut(s)	124
Bsu15I	ATCGAT	1 cut(s)	504
BsuI	GTATCC	1 cut(s)	462
BsuRI	GGCC	2 cut(s)	169, 487
BsuTUI	ATCGAT	1 cut(s)	504
BtgI	CCRYGG	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	167
ClaI	ATCGAT	1 cut(s)	504
CviAII	CATG	3 cut(s)	184, 199, 398
DdeI	CTNAG	3 cut(s)	44, 133, 347
DpnI	GATC	2 cut(s)	503, 507
DpnII	GATC	2 cut(s)	501, 505
EciI	GGCGGA	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	198
Eco57I	CTGAAG	2 cut(s)	276, 291
EcoRI	GAATTC	1 cut(s)	193
EcoRII	CCWGG	2 cut(s)	477, 513
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	3 cut(s)	187, 202, 401
FaiI	YATR	5 cut(s)	185, 200, 362, 399, 458
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	3 cut(s)	183, 198, 397
FauI	CCCGC	2 cut(s)	65, 121
Fnu4HI	GCNGC	4 cut(s)	15, 221, 253, 420
Fsp4HI	GCNGC	4 cut(s)	15, 221, 253, 420
FspBI	CTAG	1 cut(s)	589
GluI	GCNGC	4 cut(s)	15, 221, 253, 420
HaeIII	GGCC	2 cut(s)	169, 487
Hin1II	CATG	3 cut(s)	187, 202, 401
HinfI	GANTC	7 cut(s)	48, 141, 180, 262, 301, 329, 385
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	1 cut(s)	563
Hpy188I	TCNGA	4 cut(s)	47, 84, 295, 510
Hpy188III	TCNNGA	2 cut(s)	228, 564
Hpy8I	GTNNAC	1 cut(s)	563
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	234, 533
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	2 cut(s)	422, 437
HpyF10VI	GCNNNNNNNGC	4 cut(s)	249, 374, 416, 519
HpyF3I	CTNAG	3 cut(s)	44, 133, 347
HpySE526I	ACGT	1 cut(s)	559
Hsp92II	CATG	3 cut(s)	187, 202, 401
Kzo9I	GATC	2 cut(s)	501, 505
LmnI	GCTCC	2 cut(s)	174, 510
LpnPI	CCDG	9 cut(s)	110, 118, 120, 282, 425, 464, 491, 500, 527
Lsp1109I	GCAGC	3 cut(s)	26, 207, 406
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	589
MaeII	ACGT	1 cut(s)	559
MaeIII	GTNAC	1 cut(s)	555
MalI	GATC	2 cut(s)	503, 507
MboI	GATC	2 cut(s)	501, 505
MboII	GAAGA	7 cut(s)	43, 87, 257, 282, 284, 518, 537
MfeI	CAATTG	1 cut(s)	575
MluCI	AATT	5 cut(s)	22, 193, 439, 489, 575
MlyI	GAGTC	2 cut(s)	189, 310
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	4 cut(s)	53, 165, 387, 477
MroXI	GAANNNNTTC	1 cut(s)	522
MspR9I	CCNGG	2 cut(s)	479, 515
MunI	CAATTG	1 cut(s)	575
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	2 cut(s)	479, 515
MwoI	GCNNNNNNNGC	4 cut(s)	249, 374, 416, 519
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	2 cut(s)	501, 505
NlaIII	CATG	3 cut(s)	187, 202, 401
NlaIV	GGNNCC	2 cut(s)	168, 512
NmeAIII	GCCGAG	1 cut(s)	195
NspV	TTCGAA	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PctI	GAATGC	1 cut(s)	524
PdmI	GAANNNNTTC	1 cut(s)	522
PfeI	GAWTC	5 cut(s)	48, 141, 262, 329, 385
PkrI	GCNGC	4 cut(s)	16, 222, 254, 421
Ple19I	CGATCG	1 cut(s)	508
PleI	GAGTC	2 cut(s)	188, 309
PpsI	GAGTC	2 cut(s)	188, 309
Psp6I	CCWGG	2 cut(s)	477, 513
PspGI	CCWGG	2 cut(s)	477, 513
PspN4I	GGNNCC	2 cut(s)	168, 512
PspPI	GGNCC	1 cut(s)	167
PvuI	CGATCG	1 cut(s)	508
SatI	GCNGC	4 cut(s)	15, 221, 253, 420
Sau3AI	GATC	2 cut(s)	501, 505
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	2 cut(s)	189, 310
ScrFI	CCNGG	2 cut(s)	479, 515
SetI	ASST	5 cut(s)	45, 139, 160, 271, 562
SfaNI	GCATC	1 cut(s)	207
SfuI	TTCGAA	1 cut(s)	191
Sse9I	AATT	5 cut(s)	22, 193, 439, 489, 575
SsiI	CCGC	4 cut(s)	58, 114, 252, 255
SspMI	CTAG	1 cut(s)	589
StyD4I	CCNGG	2 cut(s)	477, 513
StyI	CCWWGG	1 cut(s)	198
TaiI	ACGT	1 cut(s)	562
TaqI	TCGA	5 cut(s)	191, 229, 332, 343, 504
TasI	AATT	5 cut(s)	22, 193, 439, 489, 575
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	5 cut(s)	48, 141, 262, 329, 385
TseI	GCWGC	3 cut(s)	14, 220, 419
TspGWI	ACGGA	1 cut(s)	442
XapI	RAATTY	2 cut(s)	193, 439
XmnI	GAANNNNTTC	1 cut(s)	522
XspI	CTAG	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.