Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001862.1

Orthogroup ID

OG0002938

Physical Location & Seq

Genomic Coordinates Reverse (-)

86552 .. 87568

Gene Structure 1017 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001862.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggcttccagcaccattgttgagctgattaatttgcctaatggcgagatagtgcttgaacaggaaaactataattctggcctcgaaaccactgttgaccgattgagcaagtggcttgtatctggactttttgctgttggaatactatgtaggcatgatgcagaagctatgtgggctgcagtcgggtatatggtgaatactatgctcgctatcatgatcaaacgaatactgactcaagagagacgtgctgcctctggtgtatctgagcttggagtgccgtctttgcatgcgcaatctatcttctacattgttacatttgccatttcttcagttgtgcattctctagggataaatgtgataacgctgaccatgagtggatttgccttggcatttatctcatatctttcatggataccagtctcacatcgacttcatactctgagccaagtgattgtgggtggtacactagggaccattttctccattctatggtactggtcatggaatgtcgctgtgcacgaaccacatgtatttcgacttctgggttcaaatagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

185

Amino Acids

20.36

Weight (kDa)

6.36

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50920 AT3G50920 AT5G66450 AT5G66450 AT5G66450 AT5G66450 AT5G66450
fragaria_vesca	FvH4_1g12790
malus_domestica	MD02G1143500.v1.1 MD15G1256700.v1.1
prunus_persica	Prupe.7G158200_v2.0.a1
pyrus_communis	pycom02g11340 pycom15g22470
rosa_chinensis	RchiOBHm_Chr2g0100911 RchiOBHm_Chr2g0100921 RchiOBHm_Chr2g0100931
rosa_laevigata	RLG00000016993 RLG00000017024 RLG00000017026
rosa_multiflora	Rmu_sc0001659.1_g000048 Rmu_sc0001862.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141740 Rroxscaffold_6G00391440
rosa_rugosa	Rorug02G0093700 Rorug02G0093800 Rorug02G0093800
rosa_samantha	Rh2AG139800 Rh2AG141300 Rh2AG141400 Rh2BG143100 Rh2BG146500 Rh2BG146600 Rh2CG147700 Rh2CG147800 Rh2DG147000 Rh2DG147100
rosa_wichuraiana	Rw2G011080 Rw2G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	291
AccB7I	CCANNNNNTGG	1 cut(s)	489
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	2 cut(s)	463, 494
AfiI	CCNNNNNNNGG	1 cut(s)	489
AflIII	ACRYGT	1 cut(s)	526
AgsI	TTSAA	2 cut(s)	59, 549
AjiI	CACGTC	1 cut(s)	245
AluBI	AGCT	3 cut(s)	25, 167, 268
AluI	AGCT	3 cut(s)	25, 167, 268
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	2 cut(s)	235, 424
Alw44I	GTGCAC	1 cut(s)	515
AoxI	GGCC	1 cut(s)	79
ApaLI	GTGCAC	1 cut(s)	515
ApeKI	GCWGC	2 cut(s)	176, 248
AseI	ATTAAT	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	471
AsuHPI	GGTGA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	471
BaeGI	GKGCMC	1 cut(s)	519
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	2 cut(s)	163, 235
BceAI	ACGGC	1 cut(s)	262
BciVI	GTATCC	1 cut(s)	405
BclI	TGATCA	1 cut(s)	216
BcoDI	GTCTC	2 cut(s)	235, 424
BfaI	CTAG	2 cut(s)	344, 467
BfmI	CTRYAG	1 cut(s)	177
BfuI	GTATCC	1 cut(s)	405
BisI	GCNGC	2 cut(s)	177, 249
BlsI	GCNGC	2 cut(s)	178, 250
Bme18I	GGWCC	1 cut(s)	471
BmgBI	CACGTC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	471
BmiI	GGNNCC	1 cut(s)	472
BmsI	GCATC	1 cut(s)	148
BpuEI	CTTGAG	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	1 cut(s)	489
Bse1I	ACTGG	2 cut(s)	416, 500
BseDI	CCNNGG	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	489
BseMII	CTCAG	2 cut(s)	255, 431
BseNI	ACTGG	2 cut(s)	416, 500
BseSI	GKGCMC	1 cut(s)	519
BseXI	GCAGC	2 cut(s)	163, 235
BshFI	GGCC	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	519
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	489
BsmAI	GTCTC	2 cut(s)	235, 424
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	484
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp143I	GATC	1 cut(s)	216
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	2 cut(s)	256, 432
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	472
BspMAI	CTGCAG	1 cut(s)	181
BsrI	ACTGG	2 cut(s)	416, 500
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	207, 288
BstDEI	CTNAG	2 cut(s)	264, 440
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	2 cut(s)	235, 424
BstMBI	GATC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 274, 283
BstNSI	RCATGY	2 cut(s)	290, 530
BstSFI	CTRYAG	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	519
BstV1I	GCAGC	2 cut(s)	163, 235
BsuI	GTATCC	1 cut(s)	405
BsuRI	GGCC	1 cut(s)	81
BtrI	CACGTC	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	2 cut(s)	207, 288
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	471
Csp6I	GTAC	2 cut(s)	462, 493
CviAII	CATG	7 cut(s)	155, 214, 287, 370, 408, 501, 527
CviJI	RGCY	8 cut(s)	5, 25, 81, 115, 167, 176, 268, 444
CviKI_1	RGCY	8 cut(s)	5, 25, 81, 115, 167, 176, 268, 444
CviQI	GTAC	2 cut(s)	462, 493
DdeI	CTNAG	2 cut(s)	264, 440
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	471
Eco57I	CTGAAG	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	7 cut(s)	158, 217, 290, 373, 411, 504, 530
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	7 cut(s)	154, 213, 286, 369, 407, 500, 526
FbaI	TGATCA	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	177, 249
Fsp4HI	GCNGC	2 cut(s)	177, 249
FspBI	CTAG	2 cut(s)	344, 467
FspI	TGCGCA	1 cut(s)	291
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	2 cut(s)	177, 249
HaeIII	GGCC	1 cut(s)	81
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	7 cut(s)	158, 217, 290, 373, 411, 504, 530
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	1 cut(s)	232
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	3 cut(s)	97, 464, 517
Hpy188I	TCNGA	2 cut(s)	265, 441
Hpy188III	TCNNGA	3 cut(s)	123, 214, 236
Hpy8I	GTNNAC	3 cut(s)	97, 464, 517
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	5 cut(s)	161, 179, 286, 337, 517
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 274, 283
HpyF3I	CTNAG	2 cut(s)	264, 440
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	7 cut(s)	158, 217, 290, 373, 411, 504, 530
HspAI	GCGC	1 cut(s)	290
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	1 cut(s)	216
LpnPI	CCDG	8 cut(s)	22, 47, 63, 108, 240, 429, 481, 527
Lsp1109I	GCAGC	2 cut(s)	163, 235
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	2 cut(s)	344, 467
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	2 cut(s)	292, 318
MhlI	GDGCHC	1 cut(s)	519
MluCI	AATT	2 cut(s)	31, 73
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	2 cut(s)	92, 262
MseI	TTAA	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	337
MwoI	GCNNNNNNNGC	3 cut(s)	173, 274, 283
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	7 cut(s)	158, 217, 290, 373, 411, 504, 530
NlaIV	GGNNCC	1 cut(s)	472
NsbI	TGCGCA	1 cut(s)	291
NspI	RCATGY	2 cut(s)	290, 530
PaeI	GCATGC	1 cut(s)	290
PagI	TCATGA	1 cut(s)	213
PciI	ACATGT	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	1 cut(s)	516
PctI	GAATGC	1 cut(s)	337
PflMI	CCANNNNNTGG	1 cut(s)	489
PkrI	GCNGC	2 cut(s)	178, 250
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PscI	ACATGT	1 cut(s)	526
PshBI	ATTAAT	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	472
PspPI	GGNCC	1 cut(s)	471
PstI	CTGCAG	1 cut(s)	181
RsaI	GTAC	2 cut(s)	463, 494
RsaNI	GTAC	2 cut(s)	462, 493
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	2 cut(s)	177, 249
Sau3AI	GATC	1 cut(s)	216
Sau96I	GGNCC	1 cut(s)	471
SchI	GAGTC	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	519
SetI	ASST	4 cut(s)	27, 169, 247, 270
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
SphI	GCATGC	1 cut(s)	290
Sse9I	AATT	2 cut(s)	31, 73
SspMI	CTAG	2 cut(s)	344, 467
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	3 cut(s)	84, 427, 535
TaqII	GACCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	31, 73
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	2 cut(s)	176, 248
TspDTI	ATGAA	2 cut(s)	396, 422
TspRI	CASTG	1 cut(s)	97
Van91I	CCANNNNNTGG	1 cut(s)	489
VneI	GTGCAC	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	471
VspI	ATTAAT	1 cut(s)	30
XceI	RCATGY	2 cut(s)	290, 530
XspI	CTAG	2 cut(s)	344, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.