Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002938

Physical Location & Seq

Genomic Coordinates Forward (+)

13039742 .. 13041322

Gene Structure 1581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG141300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTCATCATCAACCGCCATTAGTTTTCTCCAACCCAAACTCCAATTCTTCCCCTGCCCTTTTTGCAGCCTCAAATCGTTAAAACCCTTCTCCTCTCCCAAATTTCCCATATCGAAATTGGCCTTCTCCGGTGGATTAGACCCCAAGAAAGCTCCTCCACTTAGAAACAGGGTCATGGGTTCCAACAATAGCACGCTTGAGCTCATAAATTTGCCCCCTTTTCGGAACAACGCTAATGGCCACGAAACTGTTAGGGTGCTCCAACGAGAAGAATGTTCTGATGGGTCTGAGGATTCGGGCCCTGGAAATGCGGATAATGGGCTCGAGTCCACTCTCAATCGATTGGTAGAAGCTTTGTGGGCTGCAATGGGTTCTGTGGTGAATTCCACACTTTCTATTGTACTGAAAAAGATACTAAATCAAGAGAGGCCTATTCCTTCTTTGAGATCTGAGCCTGGAATGCCGTCTTCGCATTCCCAATCCATCTTCTACATTTTTATGTTTGCAATTCTTTCATTTGTGGAATGGCTGGGGATAAATGAGATTACCATAATTATTGGTGCTCTTGCCTTGGCATTTGGTGCATATCTTTCGTGGTTACGAGTTTCGCAGGGACTTCATACGATGAGCCAAGTGGTTGTGGGTGCTGCAATTGGAACCATCTTCTCCATTTTGTGGTACTGGTCATGGAATGCCGTTGTGCATGAAGCATTTACTTCCTTTTTGTGGGTTCGAATAGTTGTTGTTTTGGGGGCAGCTGGATTTTGTGCAGGATTCCTTTTGTATGTGATTCGTTATTGGATTAGGGATGACCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

272

Amino Acids

30.05

Weight (kDa)

8.94

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	151 - 231	9e-11	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50920 AT3G50920 AT5G66450 AT5G66450 AT5G66450 AT5G66450 AT5G66450
fragaria_vesca	FvH4_1g12790
malus_domestica	MD02G1143500.v1.1 MD15G1256700.v1.1
prunus_persica	Prupe.7G158200_v2.0.a1
pyrus_communis	pycom02g11340 pycom15g22470
rosa_chinensis	RchiOBHm_Chr2g0100911 RchiOBHm_Chr2g0100921 RchiOBHm_Chr2g0100931
rosa_laevigata	RLG00000016993 RLG00000017024 RLG00000017026
rosa_multiflora	Rmu_sc0001659.1_g000048 Rmu_sc0001862.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141740 Rroxscaffold_6G00391440
rosa_rugosa	Rorug02G0093700 Rorug02G0093800 Rorug02G0093800
rosa_samantha	Rh2AG139800 Rh2AG141300 Rh2AG141400 Rh2BG143100 Rh2BG146500 Rh2BG146600 Rh2CG147700 Rh2CG147800 Rh2DG147000 Rh2DG147100
rosa_wichuraiana	Rw2G011080 Rw2G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	675
AciI	CCGC	2 cut(s)	15, 311
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	3 cut(s)	101, 208, 382
AfaI	GTAC	2 cut(s)	402, 680
AfiI	CCNNNNNNNGG	3 cut(s)	222, 675, 726
AjnI	CCWGG	2 cut(s)	301, 454
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AluBI	AGCT	4 cut(s)	152, 202, 353, 758
AluI	AGCT	4 cut(s)	152, 202, 353, 758
Alw21I	GWGCWC	3 cut(s)	204, 261, 565
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	4 cut(s)	120, 238, 298, 428
ApaI	GGGCCC	1 cut(s)	302
ApeKI	GCWGC	4 cut(s)	66, 362, 647, 755
ApoI	RAATTY	3 cut(s)	101, 208, 382
AspS9I	GGNCC	2 cut(s)	298, 299
AsuHPI	GGTGA	1 cut(s)	391
AsuII	TTCGAA	1 cut(s)	733
AvaI	CYCGRG	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	302
BalI	TGGCCA	1 cut(s)	240
BanII	GRGCYC	3 cut(s)	204, 302, 324
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	3 cut(s)	204, 261, 565
BbvI	GCAGC	4 cut(s)	78, 349, 634, 767
BccI	CCATC	3 cut(s)	275, 491, 668
BceAI	ACGGC	2 cut(s)	448, 680
BcgI	CGANNNNNNTGC	2 cut(s)	573, 607
BciT130I	CCWGG	2 cut(s)	303, 456
BglII	AGATCT	1 cut(s)	446
BisI	GCNGC	4 cut(s)	67, 363, 648, 756
BlsI	GCNGC	4 cut(s)	68, 364, 649, 757
Bme1390I	CCNGG	2 cut(s)	303, 456
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	2 cut(s)	298, 299
BmiI	GGNNCC	3 cut(s)	181, 300, 658
BmrFI	CCNGG	2 cut(s)	303, 456
BpiI	GAAGAC	1 cut(s)	459
Bpu14I	TTCGAA	1 cut(s)	733
BpuEI	CTTGAG	1 cut(s)	218
Bsa29I	ATCGAT	1 cut(s)	340
BsaJI	CCNNGG	2 cut(s)	301, 570
BsaWI	WCCGGW	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	3 cut(s)	222, 675, 726
Bse1I	ACTGG	1 cut(s)	686
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	2 cut(s)	303, 456
BseCI	ATCGAT	1 cut(s)	340
BseDI	CCNNGG	2 cut(s)	301, 570
BseGI	GGATG	1 cut(s)	814
BseLI	CCNNNNNNNGG	3 cut(s)	222, 675, 726
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	2 cut(s)	279, 441
BseNI	ACTGG	1 cut(s)	686
BseRI	GAGGAG	2 cut(s)	82, 144
BseSI	GKGCMC	1 cut(s)	302
BseXI	GCAGC	4 cut(s)	78, 349, 634, 767
BseYI	CCCAGC	1 cut(s)	529
BsgI	GTGCAG	1 cut(s)	789
BshFI	GGCC	4 cut(s)	122, 240, 300, 430
BshVI	ATCGAT	1 cut(s)	340
BsiHKAI	GWGCWC	3 cut(s)	204, 261, 565
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	627
BslI	CCNNNNNNNGG	3 cut(s)	222, 675, 726
BsmFI	GGGAC	1 cut(s)	627
BsmI	GAATGC	3 cut(s)	465, 472, 697
BsnI	GGCC	4 cut(s)	122, 240, 300, 430
BsoBI	CYCGRG	1 cut(s)	323
Bsp119I	TTCGAA	1 cut(s)	733
Bsp120I	GGGCCC	1 cut(s)	298
Bsp1286I	GDGCHC	5 cut(s)	204, 261, 302, 324, 565
Bsp143I	GATC	1 cut(s)	446
BspACI	CCGC	2 cut(s)	15, 311
BspANI	GGCC	4 cut(s)	122, 240, 300, 430
BspCNI	CTCAG	2 cut(s)	280, 442
BspDI	ATCGAT	1 cut(s)	340
BspLI	GGNNCC	3 cut(s)	181, 300, 658
BspT104I	TTCGAA	1 cut(s)	733
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	686
BssECI	CCNNGG	2 cut(s)	301, 570
BssMI	GATC	1 cut(s)	446
BssT1I	CCWWGG	1 cut(s)	570
Bst2UI	CCWGG	2 cut(s)	303, 456
Bst4CI	ACNGT	1 cut(s)	250
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstBI	TTCGAA	1 cut(s)	733
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	3 cut(s)	161, 288, 450
BstF5I	GGATG	1 cut(s)	814
BstKTI	GATC	1 cut(s)	449
BstMBI	GATC	1 cut(s)	446
BstMWI	GCNNNNNNNGC	5 cut(s)	63, 359, 460, 469, 581
BstNI	CCWGG	2 cut(s)	303, 456
BstSCI	CCNGG	2 cut(s)	301, 454
BstSLI	GKGCMC	1 cut(s)	302
BstV1I	GCAGC	4 cut(s)	78, 349, 634, 767
BstV2I	GAAGAC	1 cut(s)	459
BstX2I	RGATCY	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	446
Bsu15I	ATCGAT	1 cut(s)	340
BsuRI	GGCC	4 cut(s)	122, 240, 300, 430
BsuTUI	ATCGAT	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	814
Cac8I	GCNNGC	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	298, 299
ClaI	ATCGAT	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	401, 679
CviAII	CATG	3 cut(s)	175, 687, 704
CviQI	GTAC	2 cut(s)	401, 679
DdeI	CTNAG	3 cut(s)	161, 288, 450
DpnI	GATC	1 cut(s)	448
DpnII	GATC	1 cut(s)	446
EaeI	YGGCCR	1 cut(s)	238
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	570
Eco147I	AGGCCT	1 cut(s)	430
Eco24I	GRGCYC	3 cut(s)	204, 302, 324
Eco53kI	GAGCTC	1 cut(s)	202
Eco88I	CYCGRG	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	382
EcoRII	CCWGG	2 cut(s)	301, 454
EcoT14I	CCWWGG	1 cut(s)	570
EcoT38I	GRGCYC	3 cut(s)	204, 302, 324
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	3 cut(s)	178, 690, 707
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	3 cut(s)	174, 686, 703
Fnu4HI	GCNGC	4 cut(s)	67, 363, 648, 756
FriOI	GRGCYC	3 cut(s)	204, 302, 324
Fsp4HI	GCNGC	4 cut(s)	67, 363, 648, 756
GluI	GCNGC	4 cut(s)	67, 363, 648, 756
GsaI	CCCAGC	1 cut(s)	533
HaeIII	GGCC	4 cut(s)	122, 240, 300, 430
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	3 cut(s)	178, 690, 707
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	4 cut(s)	293, 326, 774, 790
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	4 cut(s)	225, 280, 289, 451
Hpy188III	TCNNGA	1 cut(s)	422
Hpy8I	GTNNAC	1 cut(s)	330
HpyAV	CCTTC	3 cut(s)	97, 133, 447
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	7 cut(s)	66, 365, 506, 584, 650, 703, 770
HpyF10VI	GCNNNNNNNGC	5 cut(s)	63, 359, 460, 469, 581
HpyF3I	CTNAG	3 cut(s)	161, 288, 450
Hsp92II	CATG	3 cut(s)	178, 690, 707
Kzo9I	GATC	1 cut(s)	446
LmnI	GCTCC	2 cut(s)	157, 264
Lsp1109I	GCAGC	4 cut(s)	78, 349, 634, 767
MaeIII	GTNAC	1 cut(s)	597
MalI	GATC	1 cut(s)	448
MboI	GATC	1 cut(s)	446
MboII	GAAGA	5 cut(s)	40, 281, 459, 478, 655
MfeI	CAATTG	1 cut(s)	651
MflI	RGATCY	1 cut(s)	446
MhlI	GDGCHC	5 cut(s)	204, 261, 302, 324, 565
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	8 cut(s)	44, 101, 116, 208, 382, 507, 552, 651
MluNI	TGGCCA	1 cut(s)	240
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	3 cut(s)	55, 207, 286
MnlI	CCTC	5 cut(s)	80, 103, 165, 283, 420
Mox20I	TGGCCA	1 cut(s)	240
MscI	TGGCCA	1 cut(s)	240
MseI	TTAA	1 cut(s)	80
MslI	CAYNNNNRTG	1 cut(s)	497
Msp20I	TGGCCA	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	758
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	2 cut(s)	303, 456
MunI	CAATTG	1 cut(s)	651
Mva1269I	GAATGC	3 cut(s)	465, 472, 697
MvaI	CCWGG	2 cut(s)	303, 456
MwoI	GCNNNNNNNGC	5 cut(s)	63, 359, 460, 469, 581
NdeII	GATC	1 cut(s)	446
NlaIII	CATG	3 cut(s)	178, 690, 707
NlaIV	GGNNCC	3 cut(s)	181, 300, 658
NspV	TTCGAA	1 cut(s)	733
PaeR7I	CTCGAG	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	430
PctI	GAATGC	3 cut(s)	465, 472, 697
PfeI	GAWTC	3 cut(s)	293, 774, 790
PflMI	CCANNNNNTGG	1 cut(s)	675
PkrI	GCNGC	4 cut(s)	68, 364, 649, 757
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Psp124BI	GAGCTC	1 cut(s)	204
Psp6I	CCWGG	2 cut(s)	301, 454
PspFI	CCCAGC	1 cut(s)	529
PspGI	CCWGG	2 cut(s)	301, 454
PspN4I	GGNNCC	3 cut(s)	181, 300, 658
PspOMI	GGGCCC	1 cut(s)	298
PspPI	GGNCC	2 cut(s)	298, 299
PspXI	VCTCGAGB	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	446
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	2 cut(s)	402, 680
RsaNI	GTAC	2 cut(s)	401, 679
RseI	CAYNNNNRTG	1 cut(s)	497
SacI	GAGCTC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	4 cut(s)	67, 363, 648, 756
Sau3AI	GATC	1 cut(s)	446
Sau96I	GGNCC	2 cut(s)	298, 299
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	2 cut(s)	303, 456
SduI	GDGCHC	5 cut(s)	204, 261, 302, 324, 565
SetI	ASST	4 cut(s)	154, 204, 355, 760
Sfr274I	CTCGAG	1 cut(s)	323
SfuI	TTCGAA	1 cut(s)	733
SlaI	CTCGAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	2 cut(s)	197, 323
SmoI	CTYRAG	2 cut(s)	197, 323
Sse9I	AATT	8 cut(s)	44, 101, 116, 208, 382, 507, 552, 651
SseBI	AGGCCT	1 cut(s)	430
SsiI	CCGC	2 cut(s)	15, 311
SstI	GAGCTC	1 cut(s)	204
StuI	AGGCCT	1 cut(s)	430
StyD4I	CCNGG	2 cut(s)	301, 454
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	4 cut(s)	113, 324, 340, 733
TasI	AATT	8 cut(s)	44, 101, 116, 208, 382, 507, 552, 651
TatI	WGTACW	1 cut(s)	400
TfiI	GAWTC	3 cut(s)	293, 774, 790
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TseI	GCWGC	4 cut(s)	66, 362, 647, 755
TspDTI	ATGAA	3 cut(s)	504, 608, 720
Van91I	CCANNNNNTGG	1 cut(s)	675
XapI	RAATTY	3 cut(s)	101, 208, 382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XhoI	CTCGAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.