Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002938

Physical Location & Seq

Genomic Coordinates Forward (+)

12963244 .. 12964272

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG147800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTTCCAGCATCATTGTTGAGCTGATTAATTTGCCTAATGGCGACATAGTGCTTGAACAGGAAAACTATAATTCTGGCCTCGAAACCACTGTTGACCGATTGAGCAAGTGGCTTGTACCTGGACTTTTTGCTGTTGGAATACTATGTAGGCATGATGCAGAAGCTATGTGGGCTGCCGTGGGGTATTTGGCGAATACTATGCTCGCTATCATGATCAAACGAATACTGACTCAAGAGAGACGTGCTGCCTCTGGTGTCTCAGTGCCGTCTTTGCATGCGCAATCTATCTTCTACATTGTTATATTTGCCATTTCTTCAGTTGTGCATTCTCTAGGGATAAATGTGATAACGCTGACCATGAGTGGATTTGCCTTGGCATTTAGCTCATATCTTTCATGGATACCAGTCTCACATCGACTTCATACTCTGAGCCAAGTGATTGTGGGTGGTACCCTTGGGACCATTTTCTCCATTCTATGGTACTGGTCATGGAATGTCGCTGTGCACGAACCATATGTATTTCGACTTCTGGGTTCAAATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

182

Amino Acids

20.04

Weight (kDa)

6.57

Isoelectric Point (pI)

32.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50920 AT3G50920 AT5G66450 AT5G66450 AT5G66450 AT5G66450 AT5G66450
fragaria_vesca	FvH4_1g12790
malus_domestica	MD02G1143500.v1.1 MD15G1256700.v1.1
prunus_persica	Prupe.7G158200_v2.0.a1
pyrus_communis	pycom02g11340 pycom15g22470
rosa_chinensis	RchiOBHm_Chr2g0100911 RchiOBHm_Chr2g0100921 RchiOBHm_Chr2g0100931
rosa_laevigata	RLG00000016993 RLG00000017024 RLG00000017026
rosa_multiflora	Rmu_sc0001659.1_g000048 Rmu_sc0001862.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141740 Rroxscaffold_6G00391440
rosa_rugosa	Rorug02G0093700 Rorug02G0093800 Rorug02G0093800
rosa_samantha	Rh2AG139800 Rh2AG141300 Rh2AG141400 Rh2BG143100 Rh2BG146500 Rh2BG146600 Rh2CG147700 Rh2CG147800 Rh2DG147000 Rh2DG147100
rosa_wichuraiana	Rw2G011080 Rw2G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	282
Acc65I	GGTACC	1 cut(s)	452
AccB1I	GGYRCC	1 cut(s)	452
AccB7I	CCANNNNNTGG	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	3 cut(s)	120, 454, 485
AfiI	CCNNNNNNNGG	1 cut(s)	480
AgsI	TTSAA	2 cut(s)	59, 540
AjiI	CACGTC	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	3 cut(s)	25, 167, 387
AluI	AGCT	3 cut(s)	25, 167, 387
Alw21I	GWGCWC	1 cut(s)	510
Alw26I	GTCTC	3 cut(s)	235, 265, 415
Alw44I	GTGCAC	1 cut(s)	506
AoxI	GGCC	1 cut(s)	79
ApaLI	GTGCAC	1 cut(s)	506
ApeKI	GCWGC	2 cut(s)	176, 248
AseI	ATTAAT	1 cut(s)	30
Asp718I	GGTACC	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	462
AvaII	GGWCC	1 cut(s)	462
BaeGI	GKGCMC	1 cut(s)	510
BanI	GGYRCC	1 cut(s)	452
BarI	GAAGNNNNNNTAC	2 cut(s)	513, 545
Bbv12I	GWGCWC	1 cut(s)	510
BbvI	GCAGC	2 cut(s)	163, 235
BceAI	ACGGC	2 cut(s)	164, 253
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	1 cut(s)	123
BciVI	GTATCC	1 cut(s)	396
BclI	TGATCA	1 cut(s)	216
BcoDI	GTCTC	3 cut(s)	235, 265, 415
BfaI	CTAG	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	396
BisI	GCNGC	2 cut(s)	177, 249
BlsI	GCNGC	2 cut(s)	178, 250
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	462
BmgBI	CACGTC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	462
BmiI	GGNNCC	2 cut(s)	454, 463
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	2 cut(s)	21, 148
BpuEI	CTTGAG	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	180, 375, 457
Bsc4I	CCNNNNNNNGG	1 cut(s)	480
Bse1I	ACTGG	2 cut(s)	407, 491
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	3 cut(s)	180, 375, 457
BseLI	CCNNNNNNNGG	1 cut(s)	480
BseMII	CTCAG	2 cut(s)	276, 422
BseNI	ACTGG	2 cut(s)	407, 491
BseSI	GKGCMC	1 cut(s)	510
BseXI	GCAGC	2 cut(s)	163, 235
BshFI	GGCC	1 cut(s)	81
BshNI	GGYRCC	1 cut(s)	452
BsiHKAI	GWGCWC	1 cut(s)	510
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	1 cut(s)	480
BsmAI	GTCTC	3 cut(s)	235, 265, 415
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	475
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp143I	GATC	1 cut(s)	216
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	2 cut(s)	275, 423
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	454, 463
BspT107I	GGYRCC	1 cut(s)	452
BsrI	ACTGG	2 cut(s)	407, 491
BssECI	CCNNGG	3 cut(s)	180, 375, 457
BssMI	GATC	1 cut(s)	216
BssT1I	CCWWGG	2 cut(s)	375, 457
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	207, 279
BstDEI	CTNAG	2 cut(s)	262, 431
BstDSI	CCRYGG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	3 cut(s)	235, 265, 415
BstMBI	GATC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 274
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	510
BstV1I	GCAGC	2 cut(s)	163, 235
BsuI	GTATCC	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	180
BtrI	CACGTC	1 cut(s)	245
BtsIMutI	CAGTG	2 cut(s)	90, 270
Cac8I	GCNNGC	2 cut(s)	207, 279
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	462
Csp6I	GTAC	3 cut(s)	119, 453, 484
CviAII	CATG	6 cut(s)	155, 214, 278, 361, 399, 492
CviJI	RGCY	8 cut(s)	5, 25, 81, 115, 167, 176, 387, 435
CviKI_1	RGCY	8 cut(s)	5, 25, 81, 115, 167, 176, 387, 435
CviQI	GTAC	3 cut(s)	119, 453, 484
DdeI	CTNAG	2 cut(s)	262, 431
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	375, 457
Eco47I	GGWCC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	2 cut(s)	375, 457
ErhI	CCWWGG	2 cut(s)	375, 457
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	6 cut(s)	158, 217, 281, 364, 402, 495
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	6 cut(s)	154, 213, 277, 360, 398, 491
FauNDI	CATATG	1 cut(s)	517
FbaI	TGATCA	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	177, 249
Fsp4HI	GCNGC	2 cut(s)	177, 249
FspBI	CTAG	1 cut(s)	335
FspI	TGCGCA	1 cut(s)	282
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	2 cut(s)	177, 249
HaeIII	GGCC	1 cut(s)	81
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	6 cut(s)	158, 217, 281, 364, 402, 495
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	97, 508
Hpy188I	TCNGA	1 cut(s)	432
Hpy188III	TCNNGA	2 cut(s)	214, 236
Hpy8I	GTNNAC	2 cut(s)	97, 508
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	4 cut(s)	161, 277, 328, 508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 274
HpyF3I	CTNAG	2 cut(s)	262, 431
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	6 cut(s)	158, 217, 281, 364, 402, 495
HspAI	GCGC	1 cut(s)	281
KpnI	GGTACC	1 cut(s)	456
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	1 cut(s)	216
LpnPI	CCDG	9 cut(s)	22, 47, 63, 108, 135, 240, 420, 472, 518
Lsp1109I	GCAGC	2 cut(s)	163, 235
LweI	GCATC	2 cut(s)	21, 148
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	1 cut(s)	244
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	2 cut(s)	283, 309
MhlI	GDGCHC	1 cut(s)	510
MluCI	AATT	2 cut(s)	31, 73
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	2 cut(s)	92, 262
MseI	TTAA	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	173, 274
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	6 cut(s)	158, 217, 281, 364, 402, 495
NlaIV	GGNNCC	2 cut(s)	454, 463
NsbI	TGCGCA	1 cut(s)	282
NspI	RCATGY	1 cut(s)	281
PaeI	GCATGC	1 cut(s)	281
PagI	TCATGA	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	507
PctI	GAATGC	1 cut(s)	328
PflMI	CCANNNNNTGG	1 cut(s)	480
PkrI	GCNGC	2 cut(s)	178, 250
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PshBI	ATTAAT	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	454, 463
PspPI	GGNCC	1 cut(s)	462
RsaI	GTAC	3 cut(s)	120, 454, 485
RsaNI	GTAC	3 cut(s)	119, 453, 484
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	2 cut(s)	177, 249
Sau3AI	GATC	1 cut(s)	216
Sau96I	GGNCC	1 cut(s)	462
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	510
SetI	ASST	5 cut(s)	27, 124, 169, 247, 389
SfaNI	GCATC	2 cut(s)	21, 148
SinI	GGWCC	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	2 cut(s)	31, 73
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	2 cut(s)	375, 457
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	3 cut(s)	84, 418, 526
TaqII	GACCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	31, 73
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	2 cut(s)	97, 270
TseI	GCWGC	2 cut(s)	176, 248
TspDTI	ATGAA	2 cut(s)	387, 413
TspRI	CASTG	2 cut(s)	97, 270
Van91I	CCANNNNNTGG	1 cut(s)	480
VneI	GTGCAC	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	462
VspI	ATTAAT	1 cut(s)	30
XceI	RCATGY	1 cut(s)	281
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.