Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002938

Physical Location & Seq

Genomic Coordinates Forward (+)

12357194 .. 12361220

Gene Structure 4027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG147100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCTTCCAGCATCATTGTTGAGCTGATTAATTTGCCTAATGGCGACATAGTGCTTGAACAGGAAAACTATAATTCTGGCCTCGAAACCACTGTTGACCGATTGAGCAAGTGGCTTGTACCTGGACTTTTTGCTGTTGGAATACTATGTAGGCATGATGCAGAAGCTATGTGGGCTGCCGTGGGGTATTTGGCGAATGCTATGCTCGCTATCATGATCAAACGAATACTGACTCAAGAGAGACGTGCTGCCTCTGGTGTATCAGTGCCGTCTTTGCATGCGCAATCTATCTTCTACATTGTTATATTTGCCATTTCTTCAGTTGTGCATTCTCTAGGGATAAATGTGATAACGCTGACCATGAGTGGATTTGCATCGGCATTTAGCTCATATCTTGTAAGTGTTCCATGTTTTTCTGCTTTTGGTTTGAATCACCATAAAATACTCGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

151

Amino Acids

16.37

Weight (kDa)

5.9

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50920 AT3G50920 AT5G66450 AT5G66450 AT5G66450 AT5G66450 AT5G66450
fragaria_vesca	FvH4_1g12790
malus_domestica	MD02G1143500.v1.1 MD15G1256700.v1.1
prunus_persica	Prupe.7G158200_v2.0.a1
pyrus_communis	pycom02g11340 pycom15g22470
rosa_chinensis	RchiOBHm_Chr2g0100911 RchiOBHm_Chr2g0100921 RchiOBHm_Chr2g0100931
rosa_laevigata	RLG00000016993 RLG00000017024 RLG00000017026
rosa_multiflora	Rmu_sc0001659.1_g000048 Rmu_sc0001862.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141740 Rroxscaffold_6G00391440
rosa_rugosa	Rorug02G0093700 Rorug02G0093800 Rorug02G0093800
rosa_samantha	Rh2AG139800 Rh2AG141300 Rh2AG141400 Rh2BG143100 Rh2BG146500 Rh2BG146600 Rh2CG147700 Rh2CG147800 Rh2DG147000 Rh2DG147100
rosa_wichuraiana	Rw2G011080 Rw2G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	1 cut(s)	120
AgsI	TTSAA	2 cut(s)	59, 430
AjiI	CACGTC	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	3 cut(s)	25, 167, 387
AluI	AGCT	3 cut(s)	25, 167, 387
Alw26I	GTCTC	1 cut(s)	235
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	2 cut(s)	176, 248
AseI	ATTAAT	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	425
BbvI	GCAGC	2 cut(s)	163, 235
BceAI	ACGGC	2 cut(s)	164, 253
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	1 cut(s)	123
BclI	TGATCA	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	1 cut(s)	335
BisI	GCNGC	2 cut(s)	177, 249
BlsI	GCNGC	2 cut(s)	178, 250
Bme1390I	CCNGG	1 cut(s)	123
BmgBI	CACGTC	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	3 cut(s)	21, 148, 383
BpuEI	CTTGAG	1 cut(s)	219
BsaBI	GATNNNNATC	1 cut(s)	373
BsaJI	CCNNGG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	180
BseJI	GATNNNNATC	1 cut(s)	373
BseXI	GCAGC	2 cut(s)	163, 235
BshFI	GGCC	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	235
BsmBI	CGTCTC	1 cut(s)	235
BsmI	GAATGC	2 cut(s)	202, 328
BsnI	GGCC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	216
BspANI	GGCC	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	207, 279
BstDSI	CCRYGG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 206, 274
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	121
BstV1I	GCAGC	2 cut(s)	163, 235
BsuRI	GGCC	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	180
BtrI	CACGTC	1 cut(s)	245
BtsIMutI	CAGTG	2 cut(s)	90, 270
Cac8I	GCNNGC	2 cut(s)	207, 279
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	5 cut(s)	155, 214, 278, 361, 408
CviJI	RGCY	7 cut(s)	5, 25, 81, 115, 167, 176, 387
CviKI_1	RGCY	7 cut(s)	5, 25, 81, 115, 167, 176, 387
CviQI	GTAC	1 cut(s)	119
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	121
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	5 cut(s)	158, 217, 281, 364, 411
FatI	CATG	5 cut(s)	154, 213, 277, 360, 407
FbaI	TGATCA	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	177, 249
Fsp4HI	GCNGC	2 cut(s)	177, 249
FspBI	CTAG	1 cut(s)	335
FspI	TGCGCA	1 cut(s)	282
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	2 cut(s)	177, 249
HaeIII	GGCC	1 cut(s)	81
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	5 cut(s)	158, 217, 281, 364, 411
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	2 cut(s)	232, 430
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188III	TCNNGA	2 cut(s)	214, 236
Hpy8I	GTNNAC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	4 cut(s)	161, 277, 328, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 206, 274
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	5 cut(s)	158, 217, 281, 364, 411
HspAI	GCGC	1 cut(s)	281
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	1 cut(s)	216
LpnPI	CCDG	6 cut(s)	22, 47, 63, 108, 135, 240
Lsp1109I	GCAGC	2 cut(s)	163, 235
LweI	GCATC	3 cut(s)	21, 148, 383
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	1 cut(s)	244
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	2 cut(s)	283, 309
MluCI	AATT	2 cut(s)	31, 73
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	2 cut(s)	92, 262
MseI	TTAA	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	123
Mva1269I	GAATGC	2 cut(s)	202, 328
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	3 cut(s)	173, 206, 274
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	5 cut(s)	158, 217, 281, 364, 411
NsbI	TGCGCA	1 cut(s)	282
NspI	RCATGY	1 cut(s)	281
PaeI	GCATGC	1 cut(s)	281
PagI	TCATGA	1 cut(s)	213
PctI	GAATGC	2 cut(s)	202, 328
PfeI	GAWTC	1 cut(s)	430
PkrI	GCNGC	2 cut(s)	178, 250
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PshBI	ATTAAT	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	2 cut(s)	177, 249
Sau3AI	GATC	1 cut(s)	216
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	5 cut(s)	27, 124, 169, 247, 389
SfaNI	GCATC	3 cut(s)	21, 148, 383
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	2 cut(s)	31, 73
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	84, 447
TaqII	GACCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	31, 73
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	2 cut(s)	97, 270
TseI	GCWGC	2 cut(s)	176, 248
TspRI	CASTG	2 cut(s)	97, 270
VspI	ATTAAT	1 cut(s)	30
XceI	RCATGY	1 cut(s)	281
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.