RchiOBHm_Chr2g0100921

Lipid phosphate phosphatase epsilon

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
12730878 .. 12731648
771 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47554

Sequence Viewer

Length: 480 bp
ATGGCTTCCAGCATCATTGTTGAGCTGATTAATTTGCCTAATGGCGACATAGTGCTTGAACAGGAAAACTATAATTCTGGCCTCGAAACCACTGTTGACCGATTGTGGCTTGGCTTTTGCTGCGTCCAGAGCAAGTGGCTTGTACCTGGACTTTTTGCTGTTGGAATACTATGTAGGCATGATGCAGAAGCTATGTGGGCTGCCGTGGGGTATTTGGCGAATACTATGCTCGCTATCATGATCAAACGAATACTGACTCAAGAGAGACGTGCTGCCTCTGGTGTCTCAGTGCCGTCTTTGCATGCGCAATCTATCTTCTACATTGTTATATTTGCCATTTCTTCAGTTGTGCATTCTCTAGGGATAAATGTGATAACGCTGACCATGAGTGGATTTGCCTTGGCATTTAGCTCATATCTTGTAAGTGTTCCATGTTTTTCTGCTTTTGGTTTGAATCACCATAAAATACTCGATGAGTGA

Protein Analysis

159

Amino Acids

17.36

Weight (kDa)

5.9

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 306
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 1 cut(s) 144
AgsI TTSAA 2 cut(s) 59, 454
AjiI CACGTC 1 cut(s) 269
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 3 cut(s) 25, 191, 411
AluI AGCT 3 cut(s) 25, 191, 411
Alw26I GTCTC 2 cut(s) 259, 289
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 3 cut(s) 120, 200, 272
AseI ATTAAT 1 cut(s) 30
AspLEI GCGC 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 449
BbvI GCAGC 3 cut(s) 107, 187, 259
BceAI ACGGC 2 cut(s) 188, 277
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 1 cut(s) 147
BclI TGATCA 1 cut(s) 240
BcoDI GTCTC 2 cut(s) 259, 289
BfaI CTAG 1 cut(s) 359
BisI GCNGC 3 cut(s) 121, 201, 273
BlsI GCNGC 3 cut(s) 122, 202, 274
Bme1390I CCNGG 1 cut(s) 147
BmgBI CACGTC 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 147
BmsI GCATC 2 cut(s) 21, 172
BpuEI CTTGAG 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 204, 399
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 2 cut(s) 204, 399
BseMII CTCAG 1 cut(s) 300
BseXI GCAGC 3 cut(s) 107, 187, 259
BshFI GGCC 1 cut(s) 81
BsmAI GTCTC 2 cut(s) 259, 289
BsmBI CGTCTC 1 cut(s) 259
BsmI GAATGC 1 cut(s) 352
BsnI GGCC 1 cut(s) 81
Bsp143I GATC 1 cut(s) 240
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 1 cut(s) 299
BspHI TCATGA 1 cut(s) 237
BssECI CCNNGG 2 cut(s) 204, 399
BssMI GATC 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 94
BstC8I GCNNGC 2 cut(s) 231, 303
BstDEI CTNAG 1 cut(s) 286
BstDSI CCRYGG 1 cut(s) 204
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 1 cut(s) 243
BstMAI GTCTC 2 cut(s) 259, 289
BstMBI GATC 1 cut(s) 240
BstMWI GCNNNNNNNGC 4 cut(s) 120, 129, 197, 298
BstNI CCWGG 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 145
BstV1I GCAGC 3 cut(s) 107, 187, 259
BsuRI GGCC 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 204
BtrI CACGTC 1 cut(s) 269
BtsIMutI CAGTG 2 cut(s) 90, 294
Cac8I GCNNGC 2 cut(s) 231, 303
CciI TCATGA 1 cut(s) 237
CfoI GCGC 1 cut(s) 307
CseI GACGC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 143
CviAII CATG 5 cut(s) 179, 238, 302, 385, 432
CviJI RGCY 9 cut(s) 5, 25, 81, 109, 114, 139, 191, 200, 411
CviKI_1 RGCY 9 cut(s) 5, 25, 81, 109, 114, 139, 191, 200, 411
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 1 cut(s) 286
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 399
Eco57I CTGAAG 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 399
Esp3I CGTCTC 1 cut(s) 259
FaeI CATG 5 cut(s) 182, 241, 305, 388, 435
FatI CATG 5 cut(s) 178, 237, 301, 384, 431
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 121, 201, 273
Fsp4HI GCNGC 3 cut(s) 121, 201, 273
FspBI CTAG 1 cut(s) 359
FspI TGCGCA 1 cut(s) 306
GlaI GCGC 1 cut(s) 306
GluI GCNGC 3 cut(s) 121, 201, 273
HaeIII GGCC 1 cut(s) 81
HgaI GACGC 1 cut(s) 112
HhaI GCGC 1 cut(s) 307
Hin1II CATG 5 cut(s) 182, 241, 305, 388, 435
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 2 cut(s) 256, 454
HphI GGTGA 1 cut(s) 449
Hpy166II GTNNAC 1 cut(s) 97
Hpy188III TCNNGA 3 cut(s) 127, 238, 260
Hpy8I GTNNAC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 3 cut(s) 185, 301, 352
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 129, 197, 298
HpyF3I CTNAG 1 cut(s) 286
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 5 cut(s) 182, 241, 305, 388, 435
HspAI GCGC 1 cut(s) 305
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 1 cut(s) 240
LpnPI CCDG 7 cut(s) 22, 47, 63, 132, 140, 159, 264
Lsp1109I GCAGC 3 cut(s) 107, 187, 259
LweI GCATC 2 cut(s) 21, 172
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 268
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MboII GAAGA 2 cut(s) 307, 333
MluCI AATT 2 cut(s) 31, 73
MlyI GAGTC 1 cut(s) 250
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 2 cut(s) 92, 286
MseI TTAA 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 147
Mva1269I GAATGC 1 cut(s) 352
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 4 cut(s) 120, 129, 197, 298
NdeII GATC 1 cut(s) 240
NlaIII CATG 5 cut(s) 182, 241, 305, 388, 435
NsbI TGCGCA 1 cut(s) 306
NspI RCATGY 1 cut(s) 305
PaeI GCATGC 1 cut(s) 305
PagI TCATGA 1 cut(s) 237
PctI GAATGC 1 cut(s) 352
PfeI GAWTC 1 cut(s) 454
PkrI GCNGC 3 cut(s) 122, 202, 274
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PshBI ATTAAT 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 3 cut(s) 121, 201, 273
Sau3AI GATC 1 cut(s) 240
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 1 cut(s) 147
SetI ASST 5 cut(s) 27, 148, 193, 271, 413
SfaNI GCATC 2 cut(s) 21, 172
SmlI CTYRAG 1 cut(s) 258
SmoI CTYRAG 1 cut(s) 258
SphI GCATGC 1 cut(s) 305
Sse9I AATT 2 cut(s) 31, 73
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 145
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 271
TaqI TCGA 2 cut(s) 84, 471
TaqII GACCGA 1 cut(s) 114
TasI AATT 2 cut(s) 31, 73
TfiI GAWTC 1 cut(s) 454
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 2 cut(s) 97, 294
TseI GCWGC 3 cut(s) 120, 200, 272
TspRI CASTG 2 cut(s) 97, 294
VspI ATTAAT 1 cut(s) 30
XceI RCATGY 1 cut(s) 305
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.