Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002938

Physical Location & Seq

Genomic Coordinates Forward (+)

12354993 .. 12357187

Gene Structure 2195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG147000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTCATCATCAACCGCCATTAGTTTTCTCCAACCCAAACTCCAATTCTTCCCCTGCCCTTTTTGCAGCCTCAAATCGTTAAAACCCTTCTCCTCTCCCAAATTTCCCATATCGAAATTGGCCTTCTCCGGTGGATTAGACCCCAAGAAAGCTCCTCCACTTAGAAACAGGGTCATGGGTTCCAACAATAGCACGCTTGAGCTCATAAATTTGCCCCCTTTTCGGAACAACGCTAATGGCCACGAAACTGTTAGGGTGCTCCAACGAGAAGAATGTTCTGATGGGTCTGAGGATTCGGGCCCTGGAAATGCGGATAATGGGCTCGAGTCCACTCTCAATCGATTGAGTAAGTGGCTTGTGTCTGGCCTTTTTGCTGTGGTGATACTATGTAGGCATGATGCAGAAGCTTTGTGGGCTGCAATGGGTTCTGTGGTGAATTCCACACTTTCTATTGTACTGAAAAAGATACTAAATCAAGAGAGGCCTATTCCTTCTTTGAGATCTGAGCCTGGAATGCCGTCTTCGCATTCCCAATCCATCTTCTACATTTTTATGTTTGCAATTCTTTCATTTGTGGAATGGCTGGGGATAAATGAGATTACCATAATTATTGGTGCTCTTGCCTTGGCATTTGGTGCATATCTTGTAAGTATTCCATATTTTTCAAGTTTTAACTTTAAAATTCACCATGGAATATGCGTTTGTAAGCAATATTTGTTTACCTCTACAGTAAACAGAATCGAAAGGGATAGGTTGCTTATGTACCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

256

Amino Acids

28.38

Weight (kDa)

9.07

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50920 AT3G50920 AT5G66450 AT5G66450 AT5G66450 AT5G66450 AT5G66450
fragaria_vesca	FvH4_1g12790
malus_domestica	MD02G1143500.v1.1 MD15G1256700.v1.1
prunus_persica	Prupe.7G158200_v2.0.a1
pyrus_communis	pycom02g11340 pycom15g22470
rosa_chinensis	RchiOBHm_Chr2g0100911 RchiOBHm_Chr2g0100921 RchiOBHm_Chr2g0100931
rosa_laevigata	RLG00000016993 RLG00000017024 RLG00000017026
rosa_multiflora	Rmu_sc0001659.1_g000048 Rmu_sc0001862.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141740 Rroxscaffold_6G00391440
rosa_rugosa	Rorug02G0093700 Rorug02G0093800 Rorug02G0093800
rosa_samantha	Rh2AG139800 Rh2AG141300 Rh2AG141400 Rh2BG143100 Rh2BG146500 Rh2BG146600 Rh2CG147700 Rh2CG147800 Rh2DG147000 Rh2DG147100
rosa_wichuraiana	Rw2G011080 Rw2G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	15, 311
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	4 cut(s)	101, 208, 436, 681
AfaI	GTAC	2 cut(s)	456, 764
AfiI	CCNNNNNNNGG	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	666
AjnI	CCWGG	2 cut(s)	301, 508
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AluBI	AGCT	3 cut(s)	152, 202, 407
AluI	AGCT	3 cut(s)	152, 202, 407
Alw21I	GWGCWC	3 cut(s)	204, 261, 619
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	5 cut(s)	120, 238, 298, 364, 482
ApaI	GGGCCC	1 cut(s)	302
ApeKI	GCWGC	2 cut(s)	66, 416
ApoI	RAATTY	4 cut(s)	101, 208, 436, 681
AspS9I	GGNCC	2 cut(s)	298, 299
AsuHPI	GGTGA	3 cut(s)	391, 445, 677
AvaI	CYCGRG	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	302
BalI	TGGCCA	1 cut(s)	240
BanII	GRGCYC	3 cut(s)	204, 302, 324
BbsI	GAAGAC	1 cut(s)	513
Bbv12I	GWGCWC	3 cut(s)	204, 261, 619
BbvI	GCAGC	2 cut(s)	78, 403
BccI	CCATC	2 cut(s)	275, 545
BceAI	ACGGC	1 cut(s)	502
BciT130I	CCWGG	2 cut(s)	303, 510
BfmI	CTRYAG	1 cut(s)	726
BglII	AGATCT	1 cut(s)	500
BisI	GCNGC	2 cut(s)	67, 417
BlsI	GCNGC	2 cut(s)	68, 418
Bme1390I	CCNGG	2 cut(s)	303, 510
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	2 cut(s)	298, 299
BmiI	GGNNCC	2 cut(s)	181, 300
BmrFI	CCNGG	2 cut(s)	303, 510
BmsI	GCATC	1 cut(s)	388
BpiI	GAAGAC	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	218
Bsa29I	ATCGAT	1 cut(s)	340
BsaJI	CCNNGG	3 cut(s)	301, 624, 688
BsaWI	WCCGGW	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	303, 510
BseCI	ATCGAT	1 cut(s)	340
BseDI	CCNNGG	3 cut(s)	301, 624, 688
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	2 cut(s)	279, 495
BseRI	GAGGAG	2 cut(s)	82, 144
BseSI	GKGCMC	1 cut(s)	302
BseXI	GCAGC	2 cut(s)	78, 403
BseYI	CCCAGC	1 cut(s)	583
BshFI	GGCC	5 cut(s)	122, 240, 300, 366, 484
BshVI	ATCGAT	1 cut(s)	340
BsiHKAI	GWGCWC	3 cut(s)	204, 261, 619
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmI	GAATGC	2 cut(s)	519, 526
BsnI	GGCC	5 cut(s)	122, 240, 300, 366, 484
BsoBI	CYCGRG	1 cut(s)	323
Bsp120I	GGGCCC	1 cut(s)	298
Bsp1286I	GDGCHC	5 cut(s)	204, 261, 302, 324, 619
Bsp143I	GATC	1 cut(s)	500
Bsp19I	CCATGG	1 cut(s)	688
BspACI	CCGC	2 cut(s)	15, 311
BspANI	GGCC	5 cut(s)	122, 240, 300, 366, 484
BspCNI	CTCAG	2 cut(s)	280, 496
BspDI	ATCGAT	1 cut(s)	340
BspLI	GGNNCC	2 cut(s)	181, 300
BsrDI	GCAATG	1 cut(s)	426
BssECI	CCNNGG	3 cut(s)	301, 624, 688
BssMI	GATC	1 cut(s)	500
BssT1I	CCWWGG	2 cut(s)	624, 688
Bst2UI	CCWGG	2 cut(s)	303, 510
Bst4CI	ACNGT	2 cut(s)	250, 730
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	3 cut(s)	161, 288, 504
BstDSI	CCRYGG	1 cut(s)	688
BstKTI	GATC	1 cut(s)	503
BstMBI	GATC	1 cut(s)	500
BstMWI	GCNNNNNNNGC	5 cut(s)	63, 413, 514, 523, 635
BstNI	CCWGG	2 cut(s)	303, 510
BstSCI	CCNGG	2 cut(s)	301, 508
BstSFI	CTRYAG	1 cut(s)	726
BstSLI	GKGCMC	1 cut(s)	302
BstV1I	GCAGC	2 cut(s)	78, 403
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	500
Bsu15I	ATCGAT	1 cut(s)	340
BsuRI	GGCC	5 cut(s)	122, 240, 300, 366, 484
BsuTUI	ATCGAT	1 cut(s)	340
BtgI	CCRYGG	1 cut(s)	688
Cac8I	GCNNGC	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	298, 299
ClaI	ATCGAT	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	455, 763
CviAII	CATG	3 cut(s)	175, 395, 689
CviQI	GTAC	2 cut(s)	455, 763
DdeI	CTNAG	3 cut(s)	161, 288, 504
DpnI	GATC	1 cut(s)	502
DpnII	GATC	1 cut(s)	500
DraI	TTTAAA	1 cut(s)	679
EaeI	YGGCCR	1 cut(s)	238
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	2 cut(s)	624, 688
Eco147I	AGGCCT	1 cut(s)	484
Eco24I	GRGCYC	3 cut(s)	204, 302, 324
Eco53kI	GAGCTC	1 cut(s)	202
Eco88I	CYCGRG	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	436
EcoRII	CCWGG	2 cut(s)	301, 508
EcoT14I	CCWWGG	2 cut(s)	624, 688
EcoT38I	GRGCYC	3 cut(s)	204, 302, 324
ErhI	CCWWGG	2 cut(s)	624, 688
FaeI	CATG	3 cut(s)	178, 398, 692
FatI	CATG	3 cut(s)	174, 394, 688
Fnu4HI	GCNGC	2 cut(s)	67, 417
FriOI	GRGCYC	3 cut(s)	204, 302, 324
Fsp4HI	GCNGC	2 cut(s)	67, 417
GluI	GCNGC	2 cut(s)	67, 417
GsaI	CCCAGC	1 cut(s)	587
HaeIII	GGCC	5 cut(s)	122, 240, 300, 366, 484
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	3 cut(s)	178, 398, 692
HindIII	AAGCTT	1 cut(s)	405
HinfI	GANTC	3 cut(s)	293, 326, 738
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	3 cut(s)	391, 445, 677
Hpy166II	GTNNAC	3 cut(s)	330, 720, 733
Hpy188I	TCNGA	4 cut(s)	225, 280, 289, 505
Hpy188III	TCNNGA	1 cut(s)	476
Hpy8I	GTNNAC	3 cut(s)	330, 720, 733
HpyAV	CCTTC	3 cut(s)	97, 133, 501
HpyCH4III	ACNGT	2 cut(s)	250, 730
HpyCH4V	TGCA	5 cut(s)	66, 401, 419, 560, 638
HpyF10VI	GCNNNNNNNGC	5 cut(s)	63, 413, 514, 523, 635
HpyF3I	CTNAG	3 cut(s)	161, 288, 504
Hsp92II	CATG	3 cut(s)	178, 398, 692
Kzo9I	GATC	1 cut(s)	500
LmnI	GCTCC	2 cut(s)	157, 264
LpnPI	CCDG	9 cut(s)	67, 142, 154, 288, 315, 348, 495, 522, 569
Lsp1109I	GCAGC	2 cut(s)	78, 403
LweI	GCATC	1 cut(s)	388
MalI	GATC	1 cut(s)	502
MboI	GATC	1 cut(s)	500
MboII	GAAGA	4 cut(s)	40, 281, 513, 532
MflI	RGATCY	1 cut(s)	500
MhlI	GDGCHC	5 cut(s)	204, 261, 302, 324, 619
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	8 cut(s)	44, 101, 116, 208, 436, 561, 606, 681
MluNI	TGGCCA	1 cut(s)	240
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	3 cut(s)	55, 207, 286
MnlI	CCTC	6 cut(s)	80, 103, 165, 283, 474, 733
Mox20I	TGGCCA	1 cut(s)	240
MscI	TGGCCA	1 cut(s)	240
MseI	TTAA	4 cut(s)	80, 672, 678, 769
MslI	CAYNNNNRTG	1 cut(s)	551
Msp20I	TGGCCA	1 cut(s)	240
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	2 cut(s)	303, 510
Mva1269I	GAATGC	2 cut(s)	519, 526
MvaI	CCWGG	2 cut(s)	303, 510
MwoI	GCNNNNNNNGC	5 cut(s)	63, 413, 514, 523, 635
NcoI	CCATGG	1 cut(s)	688
NdeII	GATC	1 cut(s)	500
NlaIII	CATG	3 cut(s)	178, 398, 692
NlaIV	GGNNCC	2 cut(s)	181, 300
PaeR7I	CTCGAG	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	484
PctI	GAATGC	2 cut(s)	519, 526
PfeI	GAWTC	2 cut(s)	293, 738
PkrI	GCNGC	2 cut(s)	68, 418
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Psp124BI	GAGCTC	1 cut(s)	204
Psp6I	CCWGG	2 cut(s)	301, 508
PspFI	CCCAGC	1 cut(s)	583
PspGI	CCWGG	2 cut(s)	301, 508
PspN4I	GGNNCC	2 cut(s)	181, 300
PspOMI	GGGCCC	1 cut(s)	298
PspPI	GGNCC	2 cut(s)	298, 299
PspXI	VCTCGAGB	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	500
RsaI	GTAC	2 cut(s)	456, 764
RsaNI	GTAC	2 cut(s)	455, 763
RseI	CAYNNNNRTG	1 cut(s)	551
SacI	GAGCTC	1 cut(s)	204
SaqAI	TTAA	4 cut(s)	80, 672, 678, 769
SatI	GCNGC	2 cut(s)	67, 417
Sau3AI	GATC	1 cut(s)	500
Sau96I	GGNCC	2 cut(s)	298, 299
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	2 cut(s)	303, 510
SduI	GDGCHC	5 cut(s)	204, 261, 302, 324, 619
SetI	ASST	6 cut(s)	154, 204, 409, 725, 755, 768
SfaNI	GCATC	1 cut(s)	388
SfcI	CTRYAG	1 cut(s)	726
Sfr274I	CTCGAG	1 cut(s)	323
SlaI	CTCGAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	551
SmlI	CTYRAG	2 cut(s)	197, 323
SmoI	CTYRAG	2 cut(s)	197, 323
Sse9I	AATT	8 cut(s)	44, 101, 116, 208, 436, 561, 606, 681
SseBI	AGGCCT	1 cut(s)	484
SsiI	CCGC	2 cut(s)	15, 311
SspI	AATATT	1 cut(s)	713
SstI	GAGCTC	1 cut(s)	204
StuI	AGGCCT	1 cut(s)	484
StyD4I	CCNGG	2 cut(s)	301, 508
StyI	CCWWGG	2 cut(s)	624, 688
TaaI	ACNGT	2 cut(s)	250, 730
TaqI	TCGA	4 cut(s)	113, 324, 340, 741
TasI	AATT	8 cut(s)	44, 101, 116, 208, 436, 561, 606, 681
TatI	WGTACW	1 cut(s)	454
TfiI	GAWTC	2 cut(s)	293, 738
Tru1I	TTAA	4 cut(s)	80, 672, 678, 769
Tru9I	TTAA	4 cut(s)	80, 672, 678, 769
TseI	GCWGC	2 cut(s)	66, 416
TspDTI	ATGAA	1 cut(s)	558
XapI	RAATTY	4 cut(s)	101, 208, 436, 681
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XhoI	CTCGAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.