Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002938

Physical Location & Seq

Genomic Coordinates Forward (+)

26534614 .. 26536524

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G66450.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCAGCGTCATCATCTTCTCTTCTTCTTCTCCACAAGCCCACCTACAATTTCCATTTCGCCGCTTCCTCTGTTCCCACTTACATCAATTCCGCTCGATTTCGAATTTCGAGCTCAATCTTCCCTTTGGATCGAAGAAGAAGAAGAAGAATCTGGTCTGTCTCTGGCTTTAAATCTATGGCCGATTTGGTTAAAACCAATGCTCGCAGAGACGGTGAAGATCGATTCCAAGCGCTCGAGCAAGAGGCTTTCATCAGTAATTCGTCGTCGGAGCTCCAGAACGAGTTGGTATCCGACGCCGGCGATGGTATTGAAGCAATCGCTAATCGTCTGAGCAAATGGATTGTAGCAGCTCTGTTTGGATCCGTTCTGCTTCTACGACATGATGGTGCAGCTTTGTGGGCTGTGATTGGATCGGTTTCAAATTCCGTGCTCTCAGTAGCTTTGAAACGTATACTTAACCAAGAGAGACCTGTTGCTACTCTCCGTTCTGATCCTGGGATGCCTTCTTCTCATGCCCAATCCATTTCTTTCATCTCTGTGTTTTCTGTCTTCTCCGTTATGGAGTGGCTTGGAACCAATGTACTCTCTCTGTTCCTTAGCGGCTTCATCCTCGCATTGGGTTCTTATTTCACGTGGTTAAGGGTTTCTCAGAAGCTTCACACGACAAGTCAAGTGGTCGTAGGTGCAATCGTGGGTTCTGTTTACTCCACCTTATGGTATGTAACTTGGAACTCTCTTGTTCTTGAAGCCTTTACCTCAACATTCTCAGTACAAATAGCTCTCTTTCTGGTTGCTGCTGCGTCTGCTTTAGGTTTTGCAGTTTATGTGCTACTTAACTGGTTTAAAGATGACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006638 GO:0006639 GO:0006651 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008195 GO:0008610 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016311 GO:0016462 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046460 GO:0046463 GO:0046486 GO:0047874 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 map00510

Pfam Domains

Protein Families

PAP2

Protein Analysis

286

Amino Acids

31.53

Weight (kDa)

9.78

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50920 AT3G50920 AT5G66450 AT5G66450 AT5G66450 AT5G66450 AT5G66450
fragaria_vesca	FvH4_1g12790
malus_domestica	MD02G1143500.v1.1 MD15G1256700.v1.1
prunus_persica	Prupe.7G158200_v2.0.a1
pyrus_communis	pycom02g11340 pycom15g22470
rosa_chinensis	RchiOBHm_Chr2g0100911 RchiOBHm_Chr2g0100921 RchiOBHm_Chr2g0100931
rosa_laevigata	RLG00000016993 RLG00000017024 RLG00000017026
rosa_multiflora	Rmu_sc0001659.1_g000048 Rmu_sc0001862.1_g000016
rosa_roxburghii	Rroxscaffold_2G00141740 Rroxscaffold_6G00391440
rosa_rugosa	Rorug02G0093700 Rorug02G0093800 Rorug02G0093800
rosa_samantha	Rh2AG139800 Rh2AG141300 Rh2AG141400 Rh2BG143100 Rh2BG146500 Rh2BG146600 Rh2CG147700 Rh2CG147800 Rh2DG147000 Rh2DG147100
rosa_wichuraiana	Rw2G011080 Rw2G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	717
AccBSI	CCGCTC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	454
AciI	CCGC	3 cut(s)	63, 93, 603
AclWI	GGATC	5 cut(s)	138, 357, 370, 421, 488
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	2 cut(s)	105, 424
AcvI	CACGTG	1 cut(s)	636
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	2 cut(s)	585, 774
AfeI	AGCGCT	1 cut(s)	234
AfiI	CCNNNNNNNGG	2 cut(s)	619, 717
AgsI	TTSAA	4 cut(s)	314, 423, 448, 749
AjnI	CCWGG	1 cut(s)	496
AluBI	AGCT	7 cut(s)	114, 274, 353, 395, 443, 658, 782
AluI	AGCT	7 cut(s)	114, 274, 353, 395, 443, 658, 782
Alw21I	GWGCWC	3 cut(s)	116, 276, 435
Alw26I	GTCTC	3 cut(s)	166, 204, 463
AlwI	GGATC	5 cut(s)	138, 357, 370, 421, 488
Ama87I	CYCGRG	1 cut(s)	236
Aor51HI	AGCGCT	1 cut(s)	234
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	5 cut(s)	5, 350, 392, 797, 800
ApoI	RAATTY	2 cut(s)	105, 424
AspLEI	GCGC	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	227
AsuII	TTCGAA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	236
BamHI	GGATCC	1 cut(s)	362
BanII	GRGCYC	2 cut(s)	116, 276
BbrPI	CACGTG	1 cut(s)	636
BbsI	GAAGAC	1 cut(s)	544
Bbv12I	GWGCWC	3 cut(s)	116, 276, 435
BbvI	GCAGC	5 cut(s)	17, 362, 404, 784, 787
BccI	CCATC	2 cut(s)	299, 380
BciT130I	CCWGG	1 cut(s)	498
BciVI	GTATCC	1 cut(s)	301
BcoDI	GTCTC	3 cut(s)	166, 204, 463
BfoI	RGCGCY	1 cut(s)	236
BfuI	GTATCC	1 cut(s)	301
BisI	GCNGC	7 cut(s)	6, 63, 351, 393, 604, 798, 801
BlsI	GCNGC	7 cut(s)	7, 64, 352, 394, 605, 799, 802
Bme1390I	CCNGG	1 cut(s)	498
BmeT110I	CYCGRG	1 cut(s)	236
BmiI	GGNNCC	2 cut(s)	364, 577
BmrFI	CCNGG	1 cut(s)	498
BmsI	GCATC	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	544
BpmI	CTGGAG	1 cut(s)	260
Bpu10I	CCTNAGC	1 cut(s)	599
Bpu14I	TTCGAA	1 cut(s)	103
Bsa29I	ATCGAT	1 cut(s)	223
BsaAI	YACGTR	1 cut(s)	636
BsaHI	GRCGYC	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	463
BsaJI	CCNNGG	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	2 cut(s)	619, 717
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	845
BseBI	CCWGG	1 cut(s)	498
BseCI	ATCGAT	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	497
BseGI	GGATG	2 cut(s)	507, 609
BseLI	CCNNNNNNNGG	2 cut(s)	619, 717
BseMII	CTCAG	4 cut(s)	323, 450, 665, 783
BseNI	ACTGG	1 cut(s)	845
BseXI	GCAGC	5 cut(s)	17, 362, 404, 784, 787
BsgI	GTGCAG	1 cut(s)	411
BshFI	GGCC	1 cut(s)	182
BshVI	ATCGAT	1 cut(s)	223
BsiHKAI	GWGCWC	3 cut(s)	116, 276, 435
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	300
BslI	CCNNNNNNNGG	2 cut(s)	619, 717
BsmAI	GTCTC	3 cut(s)	166, 204, 463
BsmBI	CGTCTC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	182
Bso31I	GGTCTC	1 cut(s)	463
BsoBI	CYCGRG	1 cut(s)	236
Bsp119I	TTCGAA	1 cut(s)	103
Bsp1286I	GDGCHC	3 cut(s)	116, 276, 435
Bsp143I	GATC	5 cut(s)	130, 220, 362, 413, 493
BspACI	CCGC	3 cut(s)	63, 93, 603
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	4 cut(s)	324, 449, 664, 782
BspDI	ATCGAT	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	364, 577
BspPI	GGATC	5 cut(s)	138, 357, 370, 421, 488
BspT104I	TTCGAA	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	463
BsrBI	CCGCTC	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	845
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	497
BssMI	GATC	5 cut(s)	130, 220, 362, 413, 493
BssNAI	GTATAC	1 cut(s)	455
BssNI	GRCGYC	1 cut(s)	297
Bst1107I	GTATAC	1 cut(s)	455
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	27
BstACI	GRCGYC	1 cut(s)	297
BstBAI	YACGTR	1 cut(s)	636
BstBI	TTCGAA	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	205, 301
BstDEI	CTNAG	5 cut(s)	332, 436, 599, 651, 769
BstF5I	GGATG	2 cut(s)	507, 609
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	5 cut(s)	133, 223, 365, 416, 496
BstMAI	GTCTC	3 cut(s)	166, 204, 463
BstMBI	GATC	5 cut(s)	130, 220, 362, 413, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 806
BstNI	CCWGG	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	496
BstV1I	GCAGC	5 cut(s)	17, 362, 404, 784, 787
BstV2I	GAAGAC	1 cut(s)	544
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BstZ17I	GTATAC	1 cut(s)	455
Bsu15I	ATCGAT	1 cut(s)	223
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	182
BsuTUI	ATCGAT	1 cut(s)	223
BtgZI	GCGATG	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	507, 609
Cac8I	GCNNGC	2 cut(s)	205, 301
CfoI	GCGC	1 cut(s)	235
Cfr10I	RCCGGY	1 cut(s)	299
ClaI	ATCGAT	1 cut(s)	223
CseI	GACGC	2 cut(s)	305, 792
Csp6I	GTAC	2 cut(s)	584, 773
CspCI	CAANNNNNGTGG	2 cut(s)	657, 692
CviAII	CATG	2 cut(s)	383, 515
CviQI	GTAC	2 cut(s)	584, 773
DdeI	CTNAG	5 cut(s)	332, 436, 599, 651, 769
DpnI	GATC	5 cut(s)	132, 222, 364, 415, 495
DpnII	GATC	5 cut(s)	130, 220, 362, 413, 493
DraI	TTTAAA	2 cut(s)	172, 847
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Ecl136II	GAGCTC	2 cut(s)	114, 274
Eco24I	GRGCYC	2 cut(s)	116, 276
Eco31I	GGTCTC	1 cut(s)	463
Eco47III	AGCGCT	1 cut(s)	234
Eco53kI	GAGCTC	2 cut(s)	114, 274
Eco72I	CACGTG	1 cut(s)	636
Eco88I	CYCGRG	1 cut(s)	236
EcoICRI	GAGCTC	2 cut(s)	114, 274
EcoRII	CCWGG	1 cut(s)	496
EcoT38I	GRGCYC	2 cut(s)	116, 276
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	2 cut(s)	386, 518
FaiI	YATR	8 cut(s)	179, 384, 455, 516, 563, 718, 723, 828
FatI	CATG	2 cut(s)	382, 514
FblI	GTMKAC	1 cut(s)	454
Fnu4HI	GCNGC	7 cut(s)	6, 63, 351, 393, 604, 798, 801
FokI	GGATG	2 cut(s)	514, 596
FriOI	GRGCYC	2 cut(s)	116, 276
Fsp4HI	GCNGC	7 cut(s)	6, 63, 351, 393, 604, 798, 801
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	7 cut(s)	6, 63, 351, 393, 604, 798, 801
GsuI	CTGGAG	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	1 cut(s)	300
HgaI	GACGC	2 cut(s)	305, 792
HhaI	GCGC	1 cut(s)	235
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	2 cut(s)	386, 518
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	2 cut(s)	150, 225
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	2 cut(s)	455, 706
Hpy188I	TCNGA	5 cut(s)	271, 295, 333, 493, 654
Hpy188III	TCNNGA	2 cut(s)	277, 746
Hpy8I	GTNNAC	2 cut(s)	455, 706
Hpy99I	CGWCG	3 cut(s)	268, 271, 299
HpyAV	CCTTC	1 cut(s)	516
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	2 cut(s)	451, 635
HpyCH4V	TGCA	3 cut(s)	392, 689, 821
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 806
HpyF3I	CTNAG	5 cut(s)	332, 436, 599, 651, 769
HpySE526I	ACGT	2 cut(s)	451, 635
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	386, 518
HspAI	GCGC	1 cut(s)	233
KroI	GCCGGC	1 cut(s)	299
KroNI	GCCGGC	1 cut(s)	301
Kzo9I	GATC	5 cut(s)	130, 220, 362, 413, 493
LmnI	GCTCC	2 cut(s)	271, 279
LpnPI	CCDG	9 cut(s)	139, 150, 290, 313, 483, 486, 510, 776, 826
Lsp1109I	GCAGC	5 cut(s)	17, 362, 404, 784, 787
LweI	GCATC	1 cut(s)	492
MaeII	ACGT	2 cut(s)	451, 635
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	5 cut(s)	132, 222, 364, 415, 495
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	5 cut(s)	130, 220, 362, 413, 493
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	3 cut(s)	116, 276, 435
MluCI	AATT	5 cut(s)	49, 88, 105, 259, 424
MmeI	TCCRAC	2 cut(s)	249, 318
MnlI	CCTC	4 cut(s)	79, 238, 623, 769
MreI	CGCCGGCG	1 cut(s)	299
MroNI	GCCGGC	1 cut(s)	299
MseI	TTAA	6 cut(s)	171, 192, 459, 641, 837, 846
MslI	CAYNNNNRTG	2 cut(s)	387, 539
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	2 cut(s)	401, 806
NaeI	GCCGGC	1 cut(s)	301
NdeII	GATC	5 cut(s)	130, 220, 362, 413, 493
NgoMIV	GCCGGC	1 cut(s)	299
NlaIII	CATG	2 cut(s)	386, 518
NlaIV	GGNNCC	2 cut(s)	364, 577
NspV	TTCGAA	1 cut(s)	103
PaeR7I	CTCGAG	1 cut(s)	236
PdiI	GCCGGC	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	150, 225
PflMI	CCANNNNNTGG	1 cut(s)	717
PkrI	GCNGC	7 cut(s)	7, 64, 352, 394, 605, 799, 802
PmaCI	CACGTG	1 cut(s)	636
PmlI	CACGTG	1 cut(s)	636
Ppu21I	YACGTR	1 cut(s)	636
Psp124BI	GAGCTC	2 cut(s)	116, 276
Psp6I	CCWGG	1 cut(s)	496
PspCI	CACGTG	1 cut(s)	636
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	2 cut(s)	364, 577
PspXI	VCTCGAGB	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	362
RsaI	GTAC	2 cut(s)	585, 774
RsaNI	GTAC	2 cut(s)	584, 773
RseI	CAYNNNNRTG	2 cut(s)	387, 539
SacI	GAGCTC	2 cut(s)	116, 276
SaqAI	TTAA	6 cut(s)	171, 192, 459, 641, 837, 846
SatI	GCNGC	7 cut(s)	6, 63, 351, 393, 604, 798, 801
Sau3AI	GATC	5 cut(s)	130, 220, 362, 413, 493
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	3 cut(s)	116, 276, 435
SfaNI	GCATC	1 cut(s)	492
Sfr274I	CTCGAG	1 cut(s)	236
SfuI	TTCGAA	1 cut(s)	103
SgrAI	CRCCGGYG	1 cut(s)	299
SlaI	CTCGAG	1 cut(s)	236
SmiMI	CAYNNNNRTG	2 cut(s)	387, 539
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	5 cut(s)	49, 88, 105, 259, 424
SsiI	CCGC	3 cut(s)	63, 93, 603
SstI	GAGCTC	2 cut(s)	116, 276
StyD4I	CCNGG	1 cut(s)	496
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	2 cut(s)	454, 638
TaqI	TCGA	6 cut(s)	97, 103, 110, 133, 223, 237
TasI	AATT	5 cut(s)	49, 88, 105, 259, 424
TatI	WGTACW	2 cut(s)	583, 772
TauI	GCSGC	2 cut(s)	65, 606
TfiI	GAWTC	2 cut(s)	150, 225
Tru1I	TTAA	6 cut(s)	171, 192, 459, 641, 837, 846
Tru9I	TTAA	6 cut(s)	171, 192, 459, 641, 837, 846
TseI	GCWGC	5 cut(s)	5, 350, 392, 797, 800
TspDTI	ATGAA	3 cut(s)	241, 523, 598
TspGWI	ACGGA	4 cut(s)	355, 418, 476, 547
Van91I	CCANNNNNTGG	1 cut(s)	717
XapI	RAATTY	2 cut(s)	105, 424
XhoI	CTCGAG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.