Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008424

Physical Location & Seq

Genomic Coordinates Reverse (-)

10995659 .. 11000219

Gene Structure 4561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g12090.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2502 bp

ATGCTCTCACGATCTCTCTGTTCATGTCATTGTCTTCGTCTCCGCTCTCGCCGCCGTCTACACAACCCCATCTCCCTCTTCTGCCCTAAACGATCTTCTCTTCTTCTCATTTCCCTCTCCCCCCAAAGCCCTAATATTCGCGCCATGTCCTCCCGCCCCTCCGCCTTCGACGTACTCATGTCCGGCGCCCGCACCGCCGCCGCCAAGAAAAAGCTCCAGCCTTCTTCATCCAAGAAGCGAAAAACCCTAGACTCCACTCATCCTATCGAAAAACCCCAATTGCTATCTACGCCCGAAAGTGCCGGTACAACCCAGGACCCAGAATCCGTGGAACTTAAAGCTCCGGAATCCAAGGAAATCAAAGAAGCTCAAGAAAATTCGAGCTGTGGCGGCAACAAGGTAGTTCCGGCAGGGAAGAAAGTGTGTGTGGCGGCGGGTGCTGAGGAGCGGACCGAGGAATTGAAGAGCCGAATAGGATTGCAATGTGAGGTGAGTTTTGATTCTTCCATGATCATTCATAGGGAGTATGCTGGTAATTTAGAAACTTGTATGGACAAGAACAGAAAAAATGAAAGAAAGTTCACTCTCTCCATATTTGAAACTGGTTGCTGTGTTGTTTGCTATGTTGTTCTCGATCGTGACTACTACAAGGGCATTCGGGATAAGGGTGGTGGCAAATTAGACTACGGGTTGCAGTTGTTTGAAAAAATGAGGATACAAGATGTCTTTTCATGGACTTCAATCATTACAACTTATGTTTGGACAGGTCAAGAGGACCGGGCAATCAAAGCCTTTATAAGAATGCAGGAAGCCGGTGTCAGTCCTAACGAATACACTTTTGCAGGTGTCATGTCTAGAGTTGCCAATCTTGGTAGAGTTGAATGGGGTGAACAATTGCATGCCCACGTTTTACAAAGGGGTCTTATCTCTTTGTTGTCGGTGGGAAATTCCATTGTAACCATGTATGCAAAATGTGGGTGTTTGGCTTCAGGTTCTAAGGTGTTTCATGAGATGAGCAGGAGAGATATTGTTTCATGGAGCACTTTAATTGCCGGGTATTCTCAAGGAGGTCACGGGGAAGAAGCTTTTCAGTTTTTGTCGTGGATGAGAAGGGACGGACCACAACCAAATGAGTTTGCTCTTGCTAGTGTATTGTGTGTCTGTGGAAGCATGGCAATGCTTGAACAAGGGAAACAACTGCACGCTAATTTTCTGTTTGTCGGTTTCAATGTTTTAAAAGACGCGCCCCGAGGCGCGTCTAGACGGTTTTGGAGGCAGGGCGGGAGTGATAACGCCTCTGCCCAGTGGGAGTGGACGAAAACTTGCCGAGGCGTGGTCGAGGCAAGACTAGGCGGCTTCGCCTCACGCCTCGCGCCTAGGCTGAGCTATCCCTCGGACGCCTCGCCCACGCCTCATGCTTTTAATACATTGGTCGGTTTAGAGTTTACATCTATGGTACAAAGTGCTCTTGTGAATATGCATTCGAAATGTGGAAGTATAAAAGAAGCTGCAAAGATCGATCATGTTACAGAACTTAGTGATATTATTTCATGGACGGCGATGATTAACGGATATGCTGAACATGGGTTCTACCGAGAACCCATTGTTCTGTTTAAGAAGATTCCTAGGGTTGGTCTGAAACTAGACTTGGTGACCTTCATCGGTGTTCTTGTTGCTTGTTGCCATGCTGGAATGGTTGATCTTGGTTTCCACTACAATTCAATGAGCAATGACTTTGGGATTAATCCTGCAAAAGAACACTATGGATATGTTCGATCGATCAAAAGTATGCCATTTCAACAGGATGATGTTGTTTGGTCTACTCTCCTTAGAGCTTTTAGGCTCCATGGTGACACCGGCTGTGGAAGACGCGCTGTAGATGTGATCCTTAAATTGGATCCGAGTTGTACAGCGACTCACATAACCCTGGCCAACATGTATGCTGCTAAAGGAAAATGGAGGGAAGCGGTAGAAGTAAGGAAAATGATGAGATCCAAGGGGGTAATTAAGGAGCTGGGATGGTCCTGGATAAAGGTCAAGGATCAACTTTCTGCATTTGTCTCAGGAGAAGAAAAAAAAAACCATATCAAGGCACTTCTTGTTGCTGCTACTGACTGTGAACCTTTATATCTGATCCGTTTGCTTCAGACAAAGTTGCGAATTGGATTGGCAGAGAAGACTATTTTAGCTGCATTGGGACAAGCTGCAGTGTATACTGAAAAAAATTCTACACCACCTCCTCATATTCAGAGTCCTCTAGAAGAGGTGAGTTTAGGTTTGTTAGATCAAATGATCTACGGTAAAATCGTCCCTGCCCTTTTAAGTGGCAGCGTGTGGAATCTTCCAGAGATATGCAACTTTACTTTGGGTGTCCCAGTTGGACCTATGCTAGCAAAACCAACTAAAGGGGTATCTGAGATTGTACAGAAGTTTCAGGATACAGAATACATAAGTGAATACAAGTATGATGGAGAACGTGCCCAGGTGATACCATCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

834

Amino Acids

92.32

Weight (kDa)

9.07

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47840
fragaria_vesca	FvH4_1g12800 FvH4_2g13800
malus_domestica	MD02G1143600.v1.1 MD15G1256800.v1.1
prunus_persica	Prupe.7G158100_v2.0.a1
pyrus_communis	pycom02g11350 pycom11g12090 pycom15g22480
rosa_chinensis	RchiOBHm_Chr2g0100941
rosa_laevigata	RLG00000016992 RLG00000017027
rosa_multiflora	Rmu_sc0001659.1_g000049 Rmu_sc0001862.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141730
rosa_rugosa	Rorug02G0091300 Rorug02G0093800
rosa_samantha	Rh2AG141500 Rh2BG143000 Rh2BG146700 Rh2CG147900 Rh2DG147200
rosa_wichuraiana	Rw2G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	797
AarI	CACCTGC	1 cut(s)	833
Acc36I	ACCTGC	1 cut(s)	833
AccB1I	GGYRCC	1 cut(s)	185
AccBSI	CCGCTC	2 cut(s)	45, 448
AccI	GTMKAC	3 cut(s)	58, 1820, 2213
AccII	CGCG	5 cut(s)	141, 1244, 1256, 1373, 1872
AccIII	TCCGGA	1 cut(s)	343
AclWI	GGATC	6 cut(s)	1879, 1892, 1905, 1986, 2049, 2128
AcoI	YGGCCR	1 cut(s)	1929
AcsI	RAATTY	3 cut(s)	376, 946, 2224
AcuI	CTGAAG	2 cut(s)	972, 2129
AcyI	GRCGYC	2 cut(s)	186, 1398
AfaI	GTAC	5 cut(s)	174, 307, 1458, 1909, 2424
AfiI	CCNNNNNNNGG	5 cut(s)	1333, 1631, 1894, 2089, 2405
AflIII	ACRYGT	1 cut(s)	1935
AgsI	TTSAA	9 cut(s)	463, 599, 704, 741, 881, 1184, 1228, 1722, 1799
AjnI	CCWGG	4 cut(s)	312, 1926, 2024, 2481
AjuI	GAANNNNNNNTTGG	2 cut(s)	1631, 1663
Alw21I	GWGCWC	2 cut(s)	1043, 1468
Alw26I	GTCTC	2 cut(s)	44, 2065
AlwI	GGATC	6 cut(s)	1879, 1892, 1905, 1986, 2049, 2128
Ama87I	CYCGRG	1 cut(s)	1248
Aor13HI	TCCGGA	1 cut(s)	343
AoxI	GGCC	1 cut(s)	1929
ApeKI	GCWGC	6 cut(s)	1508, 1943, 2105, 2189, 2204, 2328
ApoI	RAATTY	3 cut(s)	376, 946, 2224
AseI	ATTAAT	1 cut(s)	1743
Asp700I	GAANNNNTTC	1 cut(s)	1086
AspA2I	CCTAGG	2 cut(s)	1376, 1625
AspLEI	GCGC	6 cut(s)	143, 188, 1246, 1256, 1375, 1874
AspS9I	GGNCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
AsuC2I	CCSGG	2 cut(s)	779, 1054
AsuHPI	GGTGA	6 cut(s)	502, 899, 1663, 1862, 2278, 2497
AsuII	TTCGAA	1 cut(s)	1484
AsuNHI	GCTAGC	1 cut(s)	2389
AvaI	CYCGRG	1 cut(s)	1248
AvaII	GGWCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
AvrII	CCTAGG	2 cut(s)	1376, 1625
BaeGI	GKGCMC	1 cut(s)	2482
BalI	TGGCCA	1 cut(s)	1931
BamHI	GGATCC	1 cut(s)	1897
BanI	GGYRCC	1 cut(s)	185
BbsI	GAAGAC	3 cut(s)	26, 1873, 2183
Bbv12I	GWGCWC	2 cut(s)	1043, 1468
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	6 cut(s)	1495, 1930, 2092, 2176, 2191, 2340
BccI	CCATC	4 cut(s)	77, 2013, 2462, 2500
BceAI	ACGGC	2 cut(s)	39, 1572
BciT130I	CCWGG	4 cut(s)	314, 1928, 2026, 2483
BciVI	GTATCC	2 cut(s)	708, 2431
BclI	TGATCA	1 cut(s)	510
BcnI	CCSGG	2 cut(s)	779, 1054
BcoDI	GTCTC	2 cut(s)	44, 2065
BfmI	CTRYAG	2 cut(s)	1875, 2205
BfoI	RGCGCY	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	833
BfuI	GTATCC	2 cut(s)	708, 2431
BlnI	CCTAGG	2 cut(s)	1376, 1625
BlpI	GCTNAGC	1 cut(s)	1382
Bme1390I	CCNGG	6 cut(s)	314, 779, 1054, 1928, 2026, 2483
Bme18I	GGWCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
BmeT110I	CYCGRG	1 cut(s)	1248
BmgT120I	GGNCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
BmiI	GGNNCC	4 cut(s)	187, 318, 1844, 1899
BmrFI	CCNGG	6 cut(s)	314, 779, 1054, 1928, 2026, 2483
BmrI	ACTGGG	2 cut(s)	1297, 2369
BmtI	GCTAGC	1 cut(s)	2393
BmuI	ACTGGG	2 cut(s)	1297, 2369
BpiI	GAAGAC	3 cut(s)	26, 1873, 2183
BpmI	CTGGAG	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu1102I	GCTNAGC	1 cut(s)	1382
Bpu14I	TTCGAA	1 cut(s)	1484
BpuEI	CTTGAG	2 cut(s)	354, 1047
BpuMI	CCSGG	2 cut(s)	779, 1054
Bsa29I	ATCGAT	2 cut(s)	1518, 1778
BsaHI	GRCGYC	2 cut(s)	186, 1398
BsaWI	WCCGGW	1 cut(s)	343
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 2221, 2251
Bsc4I	CCNNNNNNNGG	5 cut(s)	1333, 1631, 1894, 2089, 2405
Bse118I	RCCGGY	3 cut(s)	302, 812, 1856
Bse1I	ACTGG	3 cut(s)	607, 1303, 2375
Bse3DI	GCAATG	3 cut(s)	488, 1182, 1735
BseAI	TCCGGA	1 cut(s)	343
BseBI	CCWGG	4 cut(s)	314, 1928, 2026, 2483
BseCI	ATCGAT	2 cut(s)	1518, 1778
BseGI	GGATG	5 cut(s)	227, 259, 1110, 1810, 2024
BseLI	CCNNNNNNNGG	5 cut(s)	1333, 1631, 1894, 2089, 2405
BseMI	GCAATG	3 cut(s)	488, 1182, 1735
BseMII	CTCAG	4 cut(s)	432, 1373, 2076, 2406
BseNI	ACTGG	3 cut(s)	607, 1303, 2375
BseRI	GAGGAG	2 cut(s)	458, 2229
BseSI	GKGCMC	1 cut(s)	2482
BseXI	GCAGC	6 cut(s)	1495, 1930, 2092, 2176, 2191, 2340
BseYI	CCCAGC	1 cut(s)	2014
BsgI	GTGCAG	1 cut(s)	1184
Bsh1236I	CGCG	5 cut(s)	141, 1244, 1256, 1373, 1872
Bsh1285I	CGRYCG	2 cut(s)	637, 1778
BshFI	GGCC	1 cut(s)	1931
BshNI	GGYRCC	1 cut(s)	185
BshVI	ATCGAT	2 cut(s)	1518, 1778
BsiEI	CGRYCG	2 cut(s)	637, 1778
BsiHKAI	GWGCWC	2 cut(s)	1043, 1468
BsiHKCI	CYCGRG	1 cut(s)	1248
BsiSI	CCGG	8 cut(s)	183, 303, 344, 407, 778, 813, 1053, 1857
BslFI	GGGAC	4 cut(s)	1127, 2211, 2294, 2357
BslI	CCNNNNNNNGG	5 cut(s)	1333, 1631, 1894, 2089, 2405
BsmAI	GTCTC	2 cut(s)	44, 2065
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	4 cut(s)	1127, 2211, 2294, 2357
BsmI	GAATGC	3 cut(s)	654, 807, 1480
BsnI	GGCC	1 cut(s)	1931
BsoBI	CYCGRG	1 cut(s)	1248
Bsp119I	TTCGAA	1 cut(s)	1484
Bsp1286I	GDGCHC	3 cut(s)	1043, 1468, 2482
Bsp13I	TCCGGA	1 cut(s)	343
Bsp1407I	TGTACA	2 cut(s)	1907, 2422
Bsp1720I	GCTNAGC	1 cut(s)	1382
Bsp19I	CCATGG	1 cut(s)	1846
BspANI	GGCC	1 cut(s)	1931
BspCNI	CTCAG	4 cut(s)	433, 1374, 2075, 2407
BspDI	ATCGAT	2 cut(s)	1518, 1778
BspEI	TCCGGA	1 cut(s)	343
BspFNI	CGCG	5 cut(s)	141, 1244, 1256, 1373, 1872
BspHI	TCATGA	1 cut(s)	1006
BspLI	GGNNCC	4 cut(s)	187, 318, 1844, 1899
BspMAI	CTGCAG	1 cut(s)	2209
BspMI	ACCTGC	1 cut(s)	833
BspOI	GCTAGC	1 cut(s)	2393
BspPI	GGATC	6 cut(s)	1879, 1892, 1905, 1986, 2049, 2128
BspQI	GCTCTTC	1 cut(s)	458
BspT104I	TTCGAA	1 cut(s)	1484
BspT107I	GGYRCC	1 cut(s)	185
BsrBI	CCGCTC	2 cut(s)	45, 448
BsrDI	GCAATG	3 cut(s)	488, 1182, 1735
BsrFI	RCCGGY	3 cut(s)	302, 812, 1856
BsrGI	TGTACA	2 cut(s)	1907, 2422
BsrI	ACTGG	3 cut(s)	607, 1303, 2375
BssAI	RCCGGY	3 cut(s)	302, 812, 1856
BssNAI	GTATAC	1 cut(s)	2214
BssNI	GRCGYC	2 cut(s)	186, 1398
BssT1I	CCWWGG	5 cut(s)	351, 1376, 1625, 1846, 1995
Bst1107I	GTATAC	1 cut(s)	2214
Bst2UI	CCWGG	4 cut(s)	314, 1928, 2026, 2483
Bst4CI	ACNGT	3 cut(s)	1266, 2117, 2300
Bst6I	CTCTTC	4 cut(s)	83, 105, 458, 2256
BstACI	GRCGYC	2 cut(s)	186, 1398
BstAUI	TGTACA	2 cut(s)	1907, 2422
BstBI	TTCGAA	1 cut(s)	1484
BstC8I	GCNNGC	4 cut(s)	190, 900, 1203, 2391
BstDEI	CTNAG	7 cut(s)	441, 996, 1382, 1535, 1829, 2062, 2415
BstDSI	CCRYGG	2 cut(s)	327, 1846
BstEII	GGTNACC	1 cut(s)	1651
BstF5I	GGATG	5 cut(s)	227, 259, 1110, 1810, 2024
BstFNI	CGCG	5 cut(s)	141, 1244, 1256, 1373, 1872
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	6 cut(s)	143, 188, 1246, 1256, 1375, 1874
BstMAI	GTCTC	2 cut(s)	44, 2065
BstMCI	CGRYCG	2 cut(s)	637, 1778
BstMWI	GCNNNNNNNGC	6 cut(s)	51, 194, 289, 390, 437, 788
BstNI	CCWGG	4 cut(s)	314, 1928, 2026, 2483
BstNSI	RCATGY	2 cut(s)	902, 1939
BstPI	GGTNACC	1 cut(s)	1651
BstSCI	CCNGG	6 cut(s)	312, 777, 1052, 1926, 2024, 2481
BstSFI	CTRYAG	2 cut(s)	1875, 2205
BstSLI	GKGCMC	1 cut(s)	2482
BstUI	CGCG	5 cut(s)	141, 1244, 1256, 1373, 1872
BstV1I	GCAGC	6 cut(s)	1495, 1930, 2092, 2176, 2191, 2340
BstV2I	GAAGAC	3 cut(s)	26, 1873, 2183
BstX2I	RGATCY	2 cut(s)	1897, 1991
BstYI	RGATCY	2 cut(s)	1897, 1991
BstZ17I	GTATAC	1 cut(s)	2214
Bsu15I	ATCGAT	2 cut(s)	1518, 1778
BsuI	GTATCC	2 cut(s)	708, 2431
BsuRI	GGCC	1 cut(s)	1931
BsuTUI	ATCGAT	2 cut(s)	1518, 1778
BtgI	CCRYGG	2 cut(s)	327, 1846
BtgZI	GCGATG	1 cut(s)	1574
BtsCI	GGATG	5 cut(s)	227, 259, 1110, 1810, 2024
BtsI	GCAGTG	1 cut(s)	2214
BtsIMutI	CAGTG	2 cut(s)	1310, 2214
BveI	ACCTGC	1 cut(s)	833
Cac8I	GCNNGC	4 cut(s)	190, 900, 1203, 2391
CciI	TCATGA	1 cut(s)	1006
CfoI	GCGC	6 cut(s)	143, 188, 1246, 1256, 1375, 1874
Cfr10I	RCCGGY	3 cut(s)	302, 812, 1856
Cfr13I	GGNCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
ClaI	ATCGAT	2 cut(s)	1518, 1778
CpoI	CGGWCCG	1 cut(s)	450
CseI	GACGC	4 cut(s)	1245, 1250, 1406, 1878
Csp6I	GTAC	5 cut(s)	173, 306, 1457, 1908, 2423
CspI	CGGWCCG	1 cut(s)	450
CviQI	GTAC	5 cut(s)	173, 306, 1457, 1908, 2423
DdeI	CTNAG	7 cut(s)	441, 996, 1382, 1535, 1829, 2062, 2415
DinI	GGCGCC	1 cut(s)	187
DraI	TTTAAA	1 cut(s)	1236
EaeI	YGGCCR	1 cut(s)	1929
Eam1104I	CTCTTC	4 cut(s)	83, 105, 458, 2256
EarI	CTCTTC	4 cut(s)	83, 105, 458, 2256
EciI	GGCGGA	1 cut(s)	151
Eco130I	CCWWGG	5 cut(s)	351, 1376, 1625, 1846, 1995
Eco47I	GGWCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
Eco57I	CTGAAG	2 cut(s)	972, 2129
Eco88I	CYCGRG	1 cut(s)	1248
Eco91I	GGTNACC	1 cut(s)	1651
EcoO109I	RGGNCCY	1 cut(s)	316
EcoO65I	GGTNACC	1 cut(s)	1651
EcoRII	CCWGG	4 cut(s)	312, 1926, 2024, 2481
EcoT14I	CCWWGG	5 cut(s)	351, 1376, 1625, 1846, 1995
EcoT22I	ATGCAT	1 cut(s)	1482
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
ErhI	CCWWGG	5 cut(s)	351, 1376, 1625, 1846, 1995
Esp3I	CGTCTC	1 cut(s)	44
FaqI	GGGAC	4 cut(s)	1127, 2211, 2294, 2357
FauI	CCCGC	4 cut(s)	161, 197, 427, 1274
FbaI	TGATCA	1 cut(s)	510
FblI	GTMKAC	3 cut(s)	58, 1820, 2213
FokI	GGATG	5 cut(s)	214, 246, 1117, 1817, 2031
GlaI	GCGC	6 cut(s)	142, 187, 1245, 1255, 1374, 1873
GsaI	CCCAGC	1 cut(s)	2018
GsuI	CTGGAG	1 cut(s)	200
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	1931
HapII	CCGG	8 cut(s)	183, 303, 344, 407, 778, 813, 1053, 1857
HgaI	GACGC	4 cut(s)	1245, 1250, 1406, 1878
HhaI	GCGC	6 cut(s)	143, 188, 1246, 1256, 1375, 1874
Hin1I	GRCGYC	2 cut(s)	186, 1398
Hin6I	GCGC	6 cut(s)	141, 186, 1244, 1254, 1373, 1872
HinP1I	GCGC	6 cut(s)	141, 186, 1244, 1254, 1373, 1872
HindIII	AAGCTT	1 cut(s)	1083
HinfI	GANTC	8 cut(s)	251, 323, 347, 500, 1621, 1915, 2251, 2338
HpaII	CCGG	8 cut(s)	183, 303, 344, 407, 778, 813, 1053, 1857
HphI	GGTGA	6 cut(s)	502, 899, 1663, 1862, 2278, 2497
Hpy166II	GTNNAC	8 cut(s)	59, 582, 890, 1314, 1446, 1821, 2120, 2214
Hpy188I	TCNGA	7 cut(s)	1396, 1638, 1902, 2133, 2148, 2250, 2416
Hpy8I	GTNNAC	8 cut(s)	59, 582, 890, 1314, 1446, 1821, 2120, 2214
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	4 cut(s)	175, 231, 1104, 1666
HpyCH4III	ACNGT	3 cut(s)	1266, 2117, 2300
HpyCH4IV	ACGT	3 cut(s)	171, 906, 2476
HpyF10VI	GCNNNNNNNGC	6 cut(s)	51, 194, 289, 390, 437, 788
HpyF3I	CTNAG	7 cut(s)	441, 996, 1382, 1535, 1829, 2062, 2415
HpySE526I	ACGT	3 cut(s)	171, 906, 2476
Hsp92I	GRCGYC	2 cut(s)	186, 1398
HspAI	GCGC	6 cut(s)	141, 186, 1244, 1254, 1373, 1872
KasI	GGCGCC	1 cut(s)	185
Kpn2I	TCCGGA	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	510
LguI	GCTCTTC	1 cut(s)	458
LmnI	GCTCC	6 cut(s)	219, 346, 445, 1038, 1848, 2011
Lsp1109I	GCAGC	6 cut(s)	1495, 1930, 2092, 2176, 2191, 2340
MaeII	ACGT	3 cut(s)	171, 906, 2476
MaeIII	GTNAC	6 cut(s)	638, 955, 1070, 1525, 1651, 1850
MbiI	CCGCTC	2 cut(s)	45, 448
MfeI	CAATTG	2 cut(s)	278, 893
MflI	RGATCY	2 cut(s)	1897, 1991
MhlI	GDGCHC	3 cut(s)	1043, 1468, 2482
MlsI	TGGCCA	1 cut(s)	1931
MluNI	TGGCCA	1 cut(s)	1931
Mly113I	GGCGCC	1 cut(s)	186
MlyI	GAGTC	3 cut(s)	245, 1909, 2260
MmeI	TCCRAC	1 cut(s)	2359
Mox20I	TGGCCA	1 cut(s)	1931
Mph1103I	ATGCAT	1 cut(s)	1482
MroI	TCCGGA	1 cut(s)	343
MroXI	GAANNNNTTC	1 cut(s)	1086
MscI	TGGCCA	1 cut(s)	1931
MslI	CAYNNNNRTG	1 cut(s)	1175
Msp20I	TGGCCA	1 cut(s)	1931
MspI	CCGG	8 cut(s)	183, 303, 344, 407, 778, 813, 1053, 1857
MspR9I	CCNGG	6 cut(s)	314, 779, 1054, 1928, 2026, 2483
MunI	CAATTG	2 cut(s)	278, 893
Mva1269I	GAATGC	3 cut(s)	654, 807, 1480
MvaI	CCWGG	4 cut(s)	314, 1928, 2026, 2483
MvnI	CGCG	5 cut(s)	141, 1244, 1256, 1373, 1872
MwoI	GCNNNNNNNGC	6 cut(s)	51, 194, 289, 390, 437, 788
NarI	GGCGCC	1 cut(s)	186
NciI	CCSGG	2 cut(s)	779, 1054
NcoI	CCATGG	1 cut(s)	1846
NheI	GCTAGC	1 cut(s)	2389
NlaIV	GGNNCC	4 cut(s)	187, 318, 1844, 1899
NmeAIII	GCCGAG	1 cut(s)	1352
NmuCI	GTSAC	4 cut(s)	638, 1070, 1651, 1850
NsiI	ATGCAT	1 cut(s)	1482
NspI	RCATGY	2 cut(s)	902, 1939
NspV	TTCGAA	1 cut(s)	1484
PaeI	GCATGC	1 cut(s)	902
PagI	TCATGA	1 cut(s)	1006
PaqCI	CACCTGC	1 cut(s)	833
PciI	ACATGT	1 cut(s)	1935
PciSI	GCTCTTC	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	1 cut(s)	2304
PctI	GAATGC	3 cut(s)	654, 807, 1480
PdmI	GAANNNNTTC	1 cut(s)	1086
PfeI	GAWTC	5 cut(s)	323, 347, 500, 1621, 2338
PfoI	TCCNGGA	1 cut(s)	2024
Ple19I	CGATCG	2 cut(s)	637, 1778
PleI	GAGTC	3 cut(s)	245, 1909, 2259
PluTI	GGCGCC	1 cut(s)	189
PpsI	GAGTC	3 cut(s)	245, 1909, 2259
PpuMI	RGGWCCY	1 cut(s)	316
PscI	ACATGT	1 cut(s)	1935
PshBI	ATTAAT	1 cut(s)	1743
PsiI	TTATAA	1 cut(s)	797
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	4 cut(s)	312, 1926, 2024, 2481
PspEI	GGTNACC	1 cut(s)	1651
PspFI	CCCAGC	1 cut(s)	2014
PspGI	CCWGG	4 cut(s)	312, 1926, 2024, 2481
PspN4I	GGNNCC	4 cut(s)	187, 318, 1844, 1899
PspPI	GGNCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
PspPPI	RGGWCCY	1 cut(s)	316
PstI	CTGCAG	1 cut(s)	2209
PsuI	RGATCY	2 cut(s)	1897, 1991
PvuI	CGATCG	2 cut(s)	637, 1778
RsaI	GTAC	5 cut(s)	174, 307, 1458, 1909, 2424
RsaNI	GTAC	5 cut(s)	173, 306, 1457, 1908, 2423
RseI	CAYNNNNRTG	1 cut(s)	1175
Rsr2I	CGGWCCG	1 cut(s)	450
RsrII	CGGWCCG	1 cut(s)	450
SapI	GCTCTTC	1 cut(s)	458
Sau96I	GGNCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
SchI	GAGTC	3 cut(s)	245, 1909, 2260
ScrFI	CCNGG	6 cut(s)	314, 779, 1054, 1928, 2026, 2483
SduI	GDGCHC	3 cut(s)	1043, 1468, 2482
SfcI	CTRYAG	2 cut(s)	1875, 2205
SfoI	GGCGCC	1 cut(s)	187
SfuI	TTCGAA	1 cut(s)	1484
SinI	GGWCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
SmiMI	CAYNNNNRTG	1 cut(s)	1175
SmlI	CTYRAG	2 cut(s)	369, 1062
SmoI	CTYRAG	2 cut(s)	369, 1062
SphI	GCATGC	1 cut(s)	902
SspDI	GGCGCC	1 cut(s)	185
SspI	AATATT	1 cut(s)	136
StyD4I	CCNGG	6 cut(s)	312, 777, 1052, 1926, 2024, 2481
StyI	CCWWGG	5 cut(s)	351, 1376, 1625, 1846, 1995
TaaI	ACNGT	3 cut(s)	1266, 2117, 2300
TaiI	ACGT	3 cut(s)	174, 909, 2479
TaqI	TCGA	9 cut(s)	168, 267, 380, 633, 1338, 1484, 1518, 1774, 1778
TaqII	GACCGA	1 cut(s)	467
TatI	WGTACW	2 cut(s)	1907, 2422
TauI	GCSGC	6 cut(s)	54, 200, 203, 393, 434, 1356
TfiI	GAWTC	5 cut(s)	323, 347, 500, 1621, 2338
TscAI	CASTG	2 cut(s)	1310, 2214
TseFI	GTSAC	4 cut(s)	638, 1070, 1651, 1850
TseI	GCWGC	6 cut(s)	1508, 1943, 2105, 2189, 2204, 2328
Tsp45I	GTSAC	4 cut(s)	638, 1070, 1651, 1850
TspDTI	ATGAA	9 cut(s)	12, 216, 506, 585, 720, 995, 1023, 1539, 1648
TspGWI	ACGGA	4 cut(s)	316, 1131, 1584, 2126
TspRI	CASTG	2 cut(s)	1310, 2214
VpaK11BI	GGWCC	6 cut(s)	316, 450, 775, 1118, 2022, 2381
VspI	ATTAAT	1 cut(s)	1743
XapI	RAATTY	3 cut(s)	376, 946, 2224
XbaI	TCTAGA	3 cut(s)	854, 1259, 2257
XceI	RCATGY	2 cut(s)	902, 1939
XmaJI	CCTAGG	2 cut(s)	1376, 1625
XmiI	GTMKAC	3 cut(s)	58, 1820, 2213
XmnI	GAANNNNTTC	1 cut(s)	1086
Zsp2I	ATGCAT	1 cut(s)	1482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.