Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001862.1

Orthogroup ID

OG0008424

Physical Location & Seq

Genomic Coordinates Forward (+)

85031 .. 86020

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001862.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atgggcagaaaagatattgtttcatggaccactgtaattgcagggtattctcaagcaggttatggggaagaagctttcaagtatttgtcgtggatgagaagggaagaaccaaaaccaaacgagtatgcttttgcgagtgtattaagtgtttgtggaagcatggcaatgcttgagcaaggcaagcaattgcatgctcatgtcttaacggtaggtctagattctgaagctatggtacaaagtgccttagtcaatctgtactcgaaatgtggaagtatacaagaggctgcgaaaatctttgatgtgacaaaagcaaaagatgatgatgttatttcatggacgtccatgattaatggatatgctcaacatgggtactaccacgaagccattgatctgtttgagaagcttcctacggttggtctgaaaccggactcagtgaccttcattggtgttcttgctgcgtgtagccatgctggactagttgatcttggtttccactacttcaattcaatgagcaatgaatttaagattagtccttcaaaagaacactacggctgcatgatcgatctcctttgtcgagctggacggttaagtgaagcagagcacatgatcaaaagtatgccagttcaacaggatgatgttgtctggtctactctacttacagcatgtcggctccatggtgatgttgactgcggaagacacgctgcagaggagattcttaaattaaatcctaattgtgcagtgactcacataacgctagctggtatttatgctgccaaaggaatgtggagggaagccgcagaggtaaggagaatgatgagatcaaagggcgtaattaaggaacccggatggtctgggatagaggtcaagaatgggatttctgtgtttgttgctggagataggtctcatccacaaggtgatgagatatatagtgtgctggaattactagattcaaatgcagagatttctactcgggaaacagttcttcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

329

Amino Acids

36.33

Weight (kDa)

5.71

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47840
fragaria_vesca	FvH4_1g12800 FvH4_2g13800
malus_domestica	MD02G1143600.v1.1 MD15G1256800.v1.1
prunus_persica	Prupe.7G158100_v2.0.a1
pyrus_communis	pycom02g11350 pycom11g12090 pycom15g22480
rosa_chinensis	RchiOBHm_Chr2g0100941
rosa_laevigata	RLG00000016992 RLG00000017027
rosa_multiflora	Rmu_sc0001659.1_g000049 Rmu_sc0001862.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141730
rosa_rugosa	Rorug02G0091300 Rorug02G0093800
rosa_samantha	Rh2AG141500 Rh2BG143000 Rh2BG146700 Rh2CG147900 Rh2DG147200
rosa_wichuraiana	Rw2G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	47
AccI	GTMKAC	2 cut(s)	274, 647
AciI	CCGC	2 cut(s)	690, 795
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	338
AdeI	CACNNNGTG	1 cut(s)	914
AfaI	GTAC	3 cut(s)	234, 257, 371
AfiI	CCNNNNNNNGG	1 cut(s)	413
AgsI	TTSAA	6 cut(s)	79, 502, 507, 537, 626, 951
AhlI	ACTAGT	1 cut(s)	475
AluBI	AGCT	5 cut(s)	74, 227, 403, 578, 758
AluI	AGCT	5 cut(s)	74, 227, 403, 578, 758
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	1 cut(s)	906
Ama87I	CYCGRG	1 cut(s)	969
ApeKI	GCWGC	5 cut(s)	284, 455, 552, 701, 770
ApoI	RAATTY	1 cut(s)	518
AseI	ATTAAT	1 cut(s)	348
Asp700I	GAANNNNTTC	1 cut(s)	978
AspS9I	GGNCC	1 cut(s)	27
AsuC2I	CCSGG	1 cut(s)	843
AsuHPI	GGTGA	2 cut(s)	689, 926
AsuNHI	GCTAGC	1 cut(s)	754
AvaI	CYCGRG	1 cut(s)	969
AvaII	GGWCC	1 cut(s)	27
BarI	GAAGNNNNNNTAC	2 cut(s)	216, 248
BbsI	GAAGAC	1 cut(s)	700
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	5 cut(s)	271, 442, 539, 688, 757
BccI	CCATC	1 cut(s)	840
BceAI	ACGGC	1 cut(s)	565
BclI	TGATCA	1 cut(s)	606
BcnI	CCSGG	1 cut(s)	843
BcoDI	GTCTC	1 cut(s)	906
BcuI	ACTAGT	1 cut(s)	475
BfaI	CTAG	4 cut(s)	215, 476, 755, 944
BfmI	CTRYAG	1 cut(s)	702
BfuAI	ACCTGC	1 cut(s)	47
BisI	GCNGC	6 cut(s)	285, 456, 553, 702, 771, 795
BlsI	GCNGC	6 cut(s)	286, 457, 554, 703, 772, 796
Bme1390I	CCNGG	1 cut(s)	843
Bme18I	GGWCC	1 cut(s)	27
BmeT110I	CYCGRG	1 cut(s)	969
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	2 cut(s)	671, 840
BmrFI	CCNGG	1 cut(s)	843
BmtI	GCTAGC	1 cut(s)	758
BpiI	GAAGAC	1 cut(s)	700
BpmI	CTGGAG	1 cut(s)	912
BpuEI	CTTGAG	2 cut(s)	36, 191
BpuMI	CCSGG	1 cut(s)	843
Bsa29I	ATCGAT	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	338
BsaI	GGTCTC	1 cut(s)	906
BsaJI	CCNNGG	1 cut(s)	673
BsaWI	WCCGGW	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse1I	ACTGG	1 cut(s)	620
Bse3DI	GCAATG	2 cut(s)	171, 520
BseCI	ATCGAT	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	673
BseGI	GGATG	4 cut(s)	99, 637, 851, 904
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMI	GCAATG	2 cut(s)	171, 520
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	620
BseRI	GAGGAG	1 cut(s)	722
BseXI	GCAGC	5 cut(s)	271, 442, 539, 688, 757
BsgI	GTGCAG	1 cut(s)	756
BshVI	ATCGAT	1 cut(s)	561
BsiHKAI	GWGCWC	1 cut(s)	603
BsiHKCI	CYCGRG	1 cut(s)	969
BsiSI	CCGG	2 cut(s)	425, 843
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	1 cut(s)	906
Bso31I	GGTCTC	1 cut(s)	906
BsoBI	CYCGRG	1 cut(s)	969
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp143I	GATC	6 cut(s)	388, 481, 558, 562, 606, 818
Bsp19I	CCATGG	1 cut(s)	673
BspACI	CCGC	2 cut(s)	690, 795
BspCNI	CTCAG	1 cut(s)	443
BspDI	ATCGAT	1 cut(s)	561
BspLI	GGNNCC	2 cut(s)	671, 840
BspMAI	CTGCAG	1 cut(s)	706
BspMI	ACCTGC	1 cut(s)	47
BspOI	GCTAGC	1 cut(s)	758
BspTNI	GGTCTC	1 cut(s)	906
BsrDI	GCAATG	2 cut(s)	171, 520
BsrI	ACTGG	1 cut(s)	620
BssECI	CCNNGG	1 cut(s)	673
BssMI	GATC	6 cut(s)	388, 481, 558, 562, 606, 818
BssNAI	GTATAC	1 cut(s)	275
BssNI	GRCGYC	1 cut(s)	338
BssT1I	CCWWGG	1 cut(s)	673
Bst1107I	GTATAC	1 cut(s)	275
Bst4CI	ACNGT	5 cut(s)	34, 208, 412, 585, 979
BstACI	GRCGYC	1 cut(s)	338
BstC8I	GCNNGC	3 cut(s)	182, 192, 756
BstDEI	CTNAG	2 cut(s)	244, 430
BstDSI	CCRYGG	1 cut(s)	673
BstF5I	GGATG	4 cut(s)	99, 637, 851, 904
BstKTI	GATC	6 cut(s)	391, 484, 561, 565, 609, 821
BstMAI	GTCTC	1 cut(s)	906
BstMBI	GATC	6 cut(s)	388, 481, 558, 562, 606, 818
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstNSI	RCATGY	2 cut(s)	194, 666
BstSCI	CCNGG	1 cut(s)	841
BstSFI	CTRYAG	1 cut(s)	702
BstV1I	GCAGC	5 cut(s)	271, 442, 539, 688, 757
BstV2I	GAAGAC	1 cut(s)	700
BstZ17I	GTATAC	1 cut(s)	275
Bsu15I	ATCGAT	1 cut(s)	561
BsuTUI	ATCGAT	1 cut(s)	561
BtgI	CCRYGG	1 cut(s)	673
BtsCI	GGATG	4 cut(s)	99, 637, 851, 904
BtsI	GCAGTG	1 cut(s)	744
BtsIMutI	CAGTG	3 cut(s)	30, 438, 744
BveI	ACCTGC	1 cut(s)	47
Cac8I	GCNNGC	3 cut(s)	182, 192, 756
Cfr13I	GGNCC	1 cut(s)	27
ClaI	ATCGAT	1 cut(s)	561
Csp6I	GTAC	3 cut(s)	233, 256, 370
CspCI	CAANNNNNGTGG	2 cut(s)	19, 54
CviQI	GTAC	3 cut(s)	233, 256, 370
DdeI	CTNAG	2 cut(s)	244, 430
DpnI	GATC	6 cut(s)	390, 483, 560, 564, 608, 820
DpnII	GATC	6 cut(s)	388, 481, 558, 562, 606, 818
DraIII	CACNNNGTG	1 cut(s)	914
Eco130I	CCWWGG	1 cut(s)	673
Eco31I	GGTCTC	1 cut(s)	906
Eco47I	GGWCC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	969
EcoT14I	CCWWGG	1 cut(s)	673
ErhI	CCWWGG	1 cut(s)	673
FbaI	TGATCA	1 cut(s)	606
FblI	GTMKAC	2 cut(s)	274, 647
Fnu4HI	GCNGC	6 cut(s)	285, 456, 553, 702, 771, 795
FokI	GGATG	4 cut(s)	106, 644, 858, 891
Fsp4HI	GCNGC	6 cut(s)	285, 456, 553, 702, 771, 795
FspBI	CTAG	4 cut(s)	215, 476, 755, 944
GluI	GCNGC	6 cut(s)	285, 456, 553, 702, 771, 795
GsuI	CTGGAG	1 cut(s)	912
HapII	CCGG	2 cut(s)	425, 843
Hin1I	GRCGYC	1 cut(s)	338
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HindIII	AAGCTT	2 cut(s)	72, 401
HinfI	GANTC	5 cut(s)	218, 428, 712, 742, 947
HpaII	CCGG	2 cut(s)	425, 843
HphI	GGTGA	2 cut(s)	689, 926
Hpy166II	GTNNAC	3 cut(s)	275, 648, 685
Hpy188I	TCNGA	2 cut(s)	223, 420
Hpy188III	TCNNGA	3 cut(s)	215, 865, 971
Hpy8I	GTNNAC	3 cut(s)	275, 648, 685
HpyAV	CCTTC	3 cut(s)	93, 448, 543
HpyCH4III	ACNGT	5 cut(s)	34, 208, 412, 585, 979
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	6 cut(s)	41, 190, 555, 704, 737, 956
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
HpyF3I	CTNAG	2 cut(s)	244, 430
HpySE526I	ACGT	1 cut(s)	338
Hsp92I	GRCGYC	1 cut(s)	338
Ksp22I	TGATCA	1 cut(s)	606
Kzo9I	GATC	6 cut(s)	388, 481, 558, 562, 606, 818
LmnI	GCTCC	1 cut(s)	675
Lsp1109I	GCAGC	5 cut(s)	271, 442, 539, 688, 757
MaeI	CTAG	4 cut(s)	215, 476, 755, 944
MaeII	ACGT	1 cut(s)	338
MaeIII	GTNAC	3 cut(s)	301, 433, 739
MalI	GATC	6 cut(s)	390, 483, 560, 564, 608, 820
MboI	GATC	6 cut(s)	388, 481, 558, 562, 606, 818
MboII	GAAGA	4 cut(s)	80, 116, 705, 974
MfeI	CAATTG	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	603
MluCI	AATT	8 cut(s)	36, 185, 502, 518, 719, 730, 831, 938
MlyI	GAGTC	2 cut(s)	422, 736
MnlI	CCTC	5 cut(s)	274, 700, 780, 793, 853
MroXI	GAANNNNTTC	1 cut(s)	978
MseI	TTAA	8 cut(s)	143, 203, 348, 522, 587, 717, 722, 834
MslI	CAYNNNNRTG	3 cut(s)	164, 195, 678
MspI	CCGG	2 cut(s)	425, 843
MspR9I	CCNGG	1 cut(s)	843
MunI	CAATTG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	181
NciI	CCSGG	1 cut(s)	843
NcoI	CCATGG	1 cut(s)	673
NdeII	GATC	6 cut(s)	388, 481, 558, 562, 606, 818
NheI	GCTAGC	1 cut(s)	754
NlaIV	GGNNCC	2 cut(s)	671, 840
NmuCI	GTSAC	3 cut(s)	301, 433, 739
NspI	RCATGY	2 cut(s)	194, 666
PaeI	GCATGC	1 cut(s)	194
PdmI	GAANNNNTTC	1 cut(s)	978
PfeI	GAWTC	3 cut(s)	218, 712, 947
PkrI	GCNGC	6 cut(s)	286, 457, 554, 703, 772, 796
PleI	GAGTC	2 cut(s)	422, 736
PpsI	GAGTC	2 cut(s)	422, 736
PshBI	ATTAAT	1 cut(s)	348
PspN4I	GGNNCC	2 cut(s)	671, 840
PspPI	GGNCC	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	706
RsaI	GTAC	3 cut(s)	234, 257, 371
RsaNI	GTAC	3 cut(s)	233, 256, 370
RseI	CAYNNNNRTG	3 cut(s)	164, 195, 678
SaqAI	TTAA	8 cut(s)	143, 203, 348, 522, 587, 717, 722, 834
SatI	GCNGC	6 cut(s)	285, 456, 553, 702, 771, 795
Sau3AI	GATC	6 cut(s)	388, 481, 558, 562, 606, 818
Sau96I	GGNCC	1 cut(s)	27
SchI	GAGTC	2 cut(s)	422, 736
ScrFI	CCNGG	1 cut(s)	843
SduI	GDGCHC	1 cut(s)	603
SfcI	CTRYAG	1 cut(s)	702
SinI	GGWCC	1 cut(s)	27
SmiMI	CAYNNNNRTG	3 cut(s)	164, 195, 678
SmlI	CTYRAG	2 cut(s)	51, 170
SmoI	CTYRAG	2 cut(s)	51, 170
SpeI	ACTAGT	1 cut(s)	475
SphI	GCATGC	1 cut(s)	194
Sse9I	AATT	8 cut(s)	36, 185, 502, 518, 719, 730, 831, 938
SsiI	CCGC	2 cut(s)	690, 795
SspMI	CTAG	4 cut(s)	215, 476, 755, 944
StyD4I	CCNGG	1 cut(s)	841
StyI	CCWWGG	1 cut(s)	673
TaaI	ACNGT	5 cut(s)	34, 208, 412, 585, 979
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	3 cut(s)	260, 561, 574
TasI	AATT	8 cut(s)	36, 185, 502, 518, 719, 730, 831, 938
TatI	WGTACW	1 cut(s)	255
TauI	GCSGC	1 cut(s)	797
TfiI	GAWTC	3 cut(s)	218, 712, 947
Tru1I	TTAA	8 cut(s)	143, 203, 348, 522, 587, 717, 722, 834
Tru9I	TTAA	8 cut(s)	143, 203, 348, 522, 587, 717, 722, 834
TscAI	CASTG	3 cut(s)	37, 438, 744
TseFI	GTSAC	3 cut(s)	301, 433, 739
TseI	GCWGC	5 cut(s)	284, 455, 552, 701, 770
Tsp45I	GTSAC	3 cut(s)	301, 433, 739
TspDTI	ATGAA	5 cut(s)	12, 321, 430, 531, 974
TspRI	CASTG	3 cut(s)	37, 438, 744
VpaK11BI	GGWCC	1 cut(s)	27
VspI	ATTAAT	1 cut(s)	348
XapI	RAATTY	1 cut(s)	518
XbaI	TCTAGA	1 cut(s)	214
XceI	RCATGY	2 cut(s)	194, 666
XmiI	GTMKAC	2 cut(s)	274, 647
XmnI	GAANNNNTTC	1 cut(s)	978
XspI	CTAG	4 cut(s)	215, 476, 755, 944
ZraI	GACGTC	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.