Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008424

Physical Location & Seq

Genomic Coordinates Forward (+)

11918405 .. 11919033

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016992

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAGCAATGAATTTAAGATTAGTCCTTCAAAAGAACACTACGGCTGCATGATTGATCTCCTTTGTCGAGCTGGACGGTTAAGTGAAGCAGAGCACATGATCAAAAGTATGCCAGTTCAACAGGATGATGTTGTCTGGTCTACTCTACTTACAGCATGTAGGCTCCATGGTGATGTTGACTGCGGAAGATGCGCTGCAGAGGAGATTCTTAAATTAAATCCTAATTGTGCAGTGACTCACATAACGCTAGCTAGTGTTTATGCTGCCAAAGGAATGTGGAGGGAAGCAGCAGCAGTAAGGAGAATGATGAGATCAAAGGGCGTAATTAAGGAACCTGGATGGTCTGGGATAGAGGTCAAGAATGGGATTTCTGTGTTTGTTGCTGGAGATAGGTCTCATCCACAAGATCAACATTTACTGGCCCGAGGCATAATCCTTTGCATCTTCTCGTCTTCTGTCTCGAGGCAATTATGGAACCAAATGAAGTCGCCTGAACTTGGGCTCAACGATATGATGTATGCAAAGGTGAAGCATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

180

Amino Acids

19.95

Weight (kDa)

8.64

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	7 - 37	6.6e-06	PPR repeat
E_motif	PF20431	56 - 118	3.1e-10	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47840
fragaria_vesca	FvH4_1g12800 FvH4_2g13800
malus_domestica	MD02G1143600.v1.1 MD15G1256800.v1.1
prunus_persica	Prupe.7G158100_v2.0.a1
pyrus_communis	pycom02g11350 pycom11g12090 pycom15g22480
rosa_chinensis	RchiOBHm_Chr2g0100941
rosa_laevigata	RLG00000016992 RLG00000017027
rosa_multiflora	Rmu_sc0001659.1_g000049 Rmu_sc0001862.1_g000015
rosa_roxburghii	Rroxscaffold_2G00141730
rosa_rugosa	Rorug02G0091300 Rorug02G0093800
rosa_samantha	Rh2AG141500 Rh2BG143000 Rh2BG146700 Rh2CG147900 Rh2DG147200
rosa_wichuraiana	Rw2G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	140
AciI	CCGC	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	30, 119
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	2 cut(s)	71, 251
AluI	AGCT	2 cut(s)	71, 251
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	2 cut(s)	399, 463
Ama87I	CYCGRG	2 cut(s)	423, 460
AoxI	GGCC	1 cut(s)	420
ApeKI	GCWGC	5 cut(s)	45, 194, 263, 287, 290
ApoI	RAATTY	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	421
AsuHPI	GGTGA	2 cut(s)	182, 538
AsuNHI	GCTAGC	1 cut(s)	247
AvaI	CYCGRG	2 cut(s)	423, 460
BanII	GRGCYC	1 cut(s)	504
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	5 cut(s)	32, 181, 250, 299, 302
BccI	CCATC	1 cut(s)	333
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	336
BclI	TGATCA	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	399, 463
BfaI	CTAG	2 cut(s)	248, 252
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	5 cut(s)	46, 195, 264, 288, 291
BlsI	GCNGC	5 cut(s)	47, 196, 265, 289, 292
Bme1390I	CCNGG	1 cut(s)	336
BmeT110I	CYCGRG	2 cut(s)	423, 460
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	3 cut(s)	164, 333, 476
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	2 cut(s)	179, 450
BmtI	GCTAGC	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	444
BpmI	CTGGAG	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	166, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	2 cut(s)	113, 423
Bse3DI	GCAATG	2 cut(s)	13, 532
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	166, 424
BseGI	GGATG	3 cut(s)	130, 344, 397
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	2 cut(s)	13, 532
BseNI	ACTGG	2 cut(s)	113, 423
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	5 cut(s)	32, 181, 250, 299, 302
BsgI	GTGCAG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	2 cut(s)	423, 460
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	2 cut(s)	399, 463
BsnI	GGCC	1 cut(s)	422
Bso31I	GGTCTC	1 cut(s)	399
BsoBI	CYCGRG	2 cut(s)	423, 460
Bsp1286I	GDGCHC	2 cut(s)	96, 504
Bsp143I	GATC	4 cut(s)	55, 99, 311, 406
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	1 cut(s)	422
BspLI	GGNNCC	3 cut(s)	164, 333, 476
BspMAI	CTGCAG	1 cut(s)	199
BspOI	GCTAGC	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	399
BsrDI	GCAATG	2 cut(s)	13, 532
BsrI	ACTGG	2 cut(s)	113, 423
BssECI	CCNNGG	2 cut(s)	166, 424
BssMI	GATC	4 cut(s)	55, 99, 311, 406
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	3 cut(s)	130, 344, 397
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	4 cut(s)	58, 102, 314, 409
BstMAI	GTCTC	2 cut(s)	399, 463
BstMBI	GATC	4 cut(s)	55, 99, 311, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstNI	CCWGG	1 cut(s)	336
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	5 cut(s)	32, 181, 250, 299, 302
BstV2I	GAAGAC	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	422
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	3 cut(s)	130, 344, 397
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	249
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	421
CviAII	CATG	4 cut(s)	49, 97, 156, 167
CviJI	RGCY	6 cut(s)	45, 71, 163, 251, 422, 502
CviKI_1	RGCY	6 cut(s)	45, 71, 163, 251, 422, 502
DpnI	GATC	4 cut(s)	57, 101, 313, 408
DpnII	GATC	4 cut(s)	55, 99, 311, 406
Eco130I	CCWWGG	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	504
Eco31I	GGTCTC	1 cut(s)	399
Eco88I	CYCGRG	2 cut(s)	423, 460
EcoRII	CCWGG	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	4 cut(s)	52, 100, 159, 170
FatI	CATG	4 cut(s)	48, 96, 155, 166
FbaI	TGATCA	1 cut(s)	99
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	5 cut(s)	46, 195, 264, 288, 291
FokI	GGATG	3 cut(s)	137, 351, 384
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	5 cut(s)	46, 195, 264, 288, 291
FspBI	CTAG	2 cut(s)	248, 252
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	5 cut(s)	46, 195, 264, 288, 291
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	422
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	4 cut(s)	52, 100, 159, 170
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	2 cut(s)	205, 235
HphI	GGTGA	2 cut(s)	182, 538
Hpy166II	GTNNAC	2 cut(s)	141, 178
Hpy188III	TCNNGA	2 cut(s)	358, 460
Hpy8I	GTNNAC	2 cut(s)	141, 178
HpyAV	CCTTC	1 cut(s)	36
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4V	TGCA	5 cut(s)	48, 197, 230, 441, 521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
Hsp92II	CATG	4 cut(s)	52, 100, 159, 170
HspAI	GCGC	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	4 cut(s)	55, 99, 311, 406
LmnI	GCTCC	1 cut(s)	168
Lsp1109I	GCAGC	5 cut(s)	32, 181, 250, 299, 302
LweI	GCATC	2 cut(s)	179, 450
MaeI	CTAG	2 cut(s)	248, 252
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	4 cut(s)	57, 101, 313, 408
MboI	GATC	4 cut(s)	55, 99, 311, 406
MboII	GAAGA	3 cut(s)	198, 436, 444
MhlI	GDGCHC	2 cut(s)	96, 504
MluCI	AATT	5 cut(s)	11, 212, 223, 324, 467
MlyI	GAGTC	1 cut(s)	229
MnlI	CCTC	5 cut(s)	193, 273, 346, 419, 456
MseI	TTAA	5 cut(s)	15, 80, 210, 215, 327
MslI	CAYNNNNRTG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	189
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	4 cut(s)	55, 99, 311, 406
NheI	GCTAGC	1 cut(s)	247
NlaIII	CATG	4 cut(s)	52, 100, 159, 170
NlaIV	GGNNCC	3 cut(s)	164, 333, 476
NmuCI	GTSAC	1 cut(s)	232
NspI	RCATGY	1 cut(s)	159
PaeR7I	CTCGAG	1 cut(s)	460
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	5 cut(s)	47, 196, 265, 289, 292
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	3 cut(s)	164, 333, 476
PspPI	GGNCC	1 cut(s)	421
PstI	CTGCAG	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	5 cut(s)	15, 80, 210, 215, 327
SatI	GCNGC	5 cut(s)	46, 195, 264, 288, 291
Sau3AI	GATC	4 cut(s)	55, 99, 311, 406
Sau96I	GGNCC	1 cut(s)	421
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	336
SduI	GDGCHC	2 cut(s)	96, 504
SetI	ASST	6 cut(s)	73, 253, 337, 357, 395, 528
SfaNI	GCATC	2 cut(s)	179, 450
SfcI	CTRYAG	1 cut(s)	195
Sfr274I	CTCGAG	1 cut(s)	460
SlaI	CTCGAG	1 cut(s)	460
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	460
SmoI	CTYRAG	1 cut(s)	460
Sse9I	AATT	5 cut(s)	11, 212, 223, 324, 467
SsiI	CCGC	1 cut(s)	183
SspMI	CTAG	2 cut(s)	248, 252
StyD4I	CCNGG	1 cut(s)	334
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	67, 461
TasI	AATT	5 cut(s)	11, 212, 223, 324, 467
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	5 cut(s)	15, 80, 210, 215, 327
Tru9I	TTAA	5 cut(s)	15, 80, 210, 215, 327
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	5 cut(s)	45, 194, 263, 287, 290
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	24, 497
TspRI	CASTG	1 cut(s)	237
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	1 cut(s)	159
XhoI	CTCGAG	1 cut(s)	460
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	2 cut(s)	248, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.