Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010652

Physical Location & Seq

Genomic Coordinates Reverse (-)

17687885 .. 17689743

Gene Structure 1859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G47940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGGTGTAGATTACTACAATATACTAAAGGTGAATCACAACGCGACGGAGGATGATCTCAAGAAAGCTTACAAGCGTCTCGCCATGATTTGGCATCCCGATAAGAATCCATCGACGCGTCGAGACGAAGCTGAAGCCAAATTCAAACGGATCTCCGAAGCTTACGATGTTCTCTCTGATCCTCAGAAACGTCAGATCTACGATCTTTACGGCGAGGAAGGTCTTAAATCTGGCAAAATCCCTAATTCTTCTTCATCGGAGGCTTCTTCTTCTTCTTCTTCTTCCTCCTCGAGATATCCTCACTTTCATCAGCACAGGCCGCAGCATCCGCCTAACGCTTCGTCGTTTCGTTTTAACCCTAGAGACGCGGAGGACATCTATGCTGAGTTCTTTGGATCTGAAAATGGTGGAGGAAGCAATAATGCTGGTGGGAGAGGAAACAGAGCGTTTAGGAATGGTCATTTCAACACCGGTGGTGCCAATGGTTATAGCGGTGAGATGAGGAAAGTTCCAGCTATGGAGAATCCATTGCCTGTGAGTTTGGAGGATCTGTATAAAGGTGTGGTGAAGAAGATGCGGATAACTAGAAATGTCTATGATGCTTCTGGGAGAATGATGGTAGAGGCGGAGATATTGCCTATAGAAATAAAACCTGGTTGGAAGAAAGGAACAAAGCTGACATTTCCTAAGAAAGGCAATGAAGAGCCTGGAATCATACCAGCAGATATTGTATTCGTGGTTGAAGAGAAGCCACATCCTGTTTACAAGAGAGATGGGAACGATCTTTTGGTCAGTCAGGAGATAACTCTACTTGAAGCTTTAACTGGTAAGACTGTCAATCTGATCACGCTTGATGGAAGGACTCTCATGATCCCATTGACGGAGATCATTAAACCTGATCATGAGATTGTTGTTCCAAACGAAGGAATGCCTATCTCTAAAGAACCTGGAAAAAAGGGTAACTTGAAACTGAAGCTTAGTGTGAAATACCCGTCGAGGCTCACATCGGATCAGAAATTCGAGCTAAAGAGAGTTCTTGGTGGGGTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

350

Amino Acids

39.03

Weight (kDa)

9.19

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 68	1.1e-25	DnaJ domain
DnaJ_C	PF01556	174 - 331	2.8e-38	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47940
fragaria_vesca	FvH4_5g15710
malus_domestica	MD06G1186100.v1.1 MD07G1162200.v1.1 MD07G1162300.v1.1 MD14G1192300.v1.1
prunus_persica	Prupe.5G184900_v2.0.a1
pyrus_communis	pycom06g16550 pycom14g16000
rosa_chinensis	RchiOBHm_Chr7g0180401
rosa_laevigata	RLG00000005270
rosa_multiflora	Rmu_sc0018872.1_g000002 Rmu_sc0042636.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272920
rosa_rugosa	Rorug06G0432800
rosa_samantha	Rh7AG033400 Rh7BG033300 Rh7CG035300 Rh7DG033800
rosa_wichuraiana	Rw7G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	476
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccII	CGCG	3 cut(s)	44, 118, 368
AciI	CCGC	6 cut(s)	320, 329, 368, 492, 577, 626
AclWI	GGATC	6 cut(s)	158, 173, 403, 555, 865, 1017
AcsI	RAATTY	2 cut(s)	140, 1016
AcuI	CTGAAG	2 cut(s)	153, 992
AfiI	CCNNNNNNNGG	4 cut(s)	90, 692, 880, 923
AflIII	ACRYGT	1 cut(s)	116
AgeI	ACCGGT	1 cut(s)	470
AgsI	TTSAA	5 cut(s)	145, 466, 743, 815, 967
AjnI	CCWGG	3 cut(s)	652, 706, 946
AjuI	GAANNNNNNNTTGG	2 cut(s)	770, 802
AluBI	AGCT	8 cut(s)	68, 131, 161, 515, 676, 818, 976, 1024
AluI	AGCT	8 cut(s)	68, 131, 161, 515, 676, 818, 976, 1024
Alw26I	GTCTC	3 cut(s)	83, 117, 357
AlwI	GGATC	6 cut(s)	158, 173, 403, 555, 865, 1017
Ama87I	CYCGRG	1 cut(s)	289
AoxI	GGCC	1 cut(s)	317
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	2 cut(s)	140, 1016
AsiGI	ACCGGT	1 cut(s)	470
AsuHPI	GGTGA	3 cut(s)	43, 506, 577
AvaI	CYCGRG	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	476
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	4 cut(s)	118, 610, 767, 848
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	3 cut(s)	654, 708, 948
BclI	TGATCA	2 cut(s)	843, 898
BcoDI	GTCTC	3 cut(s)	83, 117, 357
BfaI	CTAG	2 cut(s)	360, 585
BfmI	CTRYAG	1 cut(s)	639
BglII	AGATCT	1 cut(s)	195
BisI	GCNGC	2 cut(s)	320, 323
BlsI	GCNGC	2 cut(s)	321, 324
Bme1390I	CCNGG	3 cut(s)	654, 708, 948
BmeT110I	CYCGRG	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	478
BmrFI	CCNGG	3 cut(s)	654, 708, 948
BmsI	GCATC	4 cut(s)	103, 334, 564, 589
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
BpuEI	CTTGAG	1 cut(s)	44
BsaBI	GATNNNNATC	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	470
BsaXI	ACNNNNNCTCC	2 cut(s)	536, 566
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 692, 880, 923
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	1 cut(s)	829
Bse3DI	GCAATG	2 cut(s)	527, 703
Bse8I	GATNNNNATC	1 cut(s)	105
BseBI	CCWGG	3 cut(s)	654, 708, 948
BseGI	GGATG	4 cut(s)	58, 94, 325, 754
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	4 cut(s)	90, 692, 880, 923
BseMI	GCAATG	2 cut(s)	527, 703
BseMII	CTCAG	2 cut(s)	197, 375
BseNI	ACTGG	1 cut(s)	829
BseRI	GAGGAG	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	334
Bsh1236I	CGCG	3 cut(s)	44, 118, 368
BshFI	GGCC	1 cut(s)	319
BshNI	GGYRCC	1 cut(s)	476
BshTI	ACCGGT	1 cut(s)	470
BsiHKCI	CYCGRG	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	471
BslI	CCNNNNNNNGG	4 cut(s)	90, 692, 880, 923
BsmAI	GTCTC	3 cut(s)	83, 117, 357
BsmBI	CGTCTC	3 cut(s)	83, 117, 357
BsmI	GAATGC	1 cut(s)	933
BsnI	GGCC	1 cut(s)	319
BsoBI	CYCGRG	1 cut(s)	289
BspACI	CCGC	6 cut(s)	320, 329, 368, 492, 577, 626
BspANI	GGCC	1 cut(s)	319
BspCNI	CTCAG	2 cut(s)	196, 376
BspFNI	CGCG	3 cut(s)	44, 118, 368
BspHI	TCATGA	3 cut(s)	867, 901, 1049
BspLI	GGNNCC	1 cut(s)	478
BspPI	GGATC	6 cut(s)	158, 173, 403, 555, 865, 1017
BspQI	GCTCTTC	1 cut(s)	696
BspT107I	GGYRCC	1 cut(s)	476
BsrDI	GCAATG	2 cut(s)	527, 703
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	829
BssAI	RCCGGY	1 cut(s)	470
Bst2UI	CCWGG	3 cut(s)	654, 708, 948
Bst4CI	ACNGT	1 cut(s)	835
Bst6I	CTCTTC	2 cut(s)	696, 738
BstDEI	CTNAG	4 cut(s)	183, 384, 687, 977
BstENI	CCTNNNNNAGG	1 cut(s)	690
BstF5I	GGATG	4 cut(s)	58, 94, 325, 754
BstFNI	CGCG	3 cut(s)	44, 118, 368
BstMAI	GTCTC	3 cut(s)	83, 117, 357
BstMWI	GCNNNNNNNGC	2 cut(s)	319, 328
BstNI	CCWGG	3 cut(s)	654, 708, 948
BstSCI	CCNGG	3 cut(s)	652, 706, 946
BstSFI	CTRYAG	1 cut(s)	639
BstUI	CGCG	3 cut(s)	44, 118, 368
BstV1I	GCAGC	1 cut(s)	334
BstX2I	RGATCY	4 cut(s)	150, 195, 395, 547
BstYI	RGATCY	4 cut(s)	150, 195, 395, 547
BsuRI	GGCC	1 cut(s)	319
BtsCI	GGATG	4 cut(s)	58, 94, 325, 754
CciI	TCATGA	3 cut(s)	867, 901, 1049
Cfr10I	RCCGGY	1 cut(s)	470
CseI	GACGC	4 cut(s)	65, 107, 124, 374
CsiI	ACCWGGT	1 cut(s)	652
CspAI	ACCGGT	1 cut(s)	470
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	4 cut(s)	85, 868, 902, 1050
DdeI	CTNAG	4 cut(s)	183, 384, 687, 977
Eam1104I	CTCTTC	2 cut(s)	696, 738
EarI	CTCTTC	2 cut(s)	696, 738
EciI	GGCGGA	2 cut(s)	318, 641
Eco32I	GATATC	1 cut(s)	296
Eco57I	CTGAAG	2 cut(s)	153, 992
Eco88I	CYCGRG	1 cut(s)	289
EcoNI	CCTNNNNNAGG	1 cut(s)	690
EcoRII	CCWGG	3 cut(s)	652, 706, 946
EcoRV	GATATC	1 cut(s)	296
Esp3I	CGTCTC	3 cut(s)	83, 117, 357
FaeI	CATG	4 cut(s)	88, 871, 905, 1053
FalI	AAGNNNNNCTT	2 cut(s)	947, 979
FatI	CATG	4 cut(s)	84, 867, 901, 1049
FbaI	TGATCA	2 cut(s)	843, 898
Fnu4HI	GCNGC	2 cut(s)	320, 323
FokI	GGATG	4 cut(s)	65, 81, 312, 741
Fsp4HI	GCNGC	2 cut(s)	320, 323
FspBI	CTAG	2 cut(s)	360, 585
GluI	GCNGC	2 cut(s)	320, 323
HaeIII	GGCC	1 cut(s)	319
HapII	CCGG	1 cut(s)	471
HgaI	GACGC	4 cut(s)	65, 107, 124, 374
Hin1II	CATG	4 cut(s)	88, 871, 905, 1053
HindIII	AAGCTT	4 cut(s)	66, 159, 816, 974
HinfI	GANTC	5 cut(s)	34, 106, 523, 711, 862
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	3 cut(s)	43, 506, 577
Hpy166II	GTNNAC	1 cut(s)	763
Hpy188I	TCNGA	9 cut(s)	157, 178, 186, 195, 259, 400, 843, 1009, 1014
Hpy188III	TCNNGA	8 cut(s)	61, 98, 122, 291, 797, 868, 902, 1050
Hpy8I	GTNNAC	1 cut(s)	763
Hpy99I	CGWCG	5 cut(s)	49, 118, 123, 346, 997
HpyAV	CCTTC	3 cut(s)	212, 852, 917
HpyCH4III	ACNGT	1 cut(s)	835
HpyCH4IV	ACGT	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	319, 328
HpyF3I	CTNAG	4 cut(s)	183, 384, 687, 977
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	4 cut(s)	88, 871, 905, 1053
Ksp22I	TGATCA	2 cut(s)	843, 898
LguI	GCTCTTC	1 cut(s)	696
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	4 cut(s)	103, 334, 564, 589
MabI	ACCWGGT	1 cut(s)	652
MaeI	CTAG	2 cut(s)	360, 585
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	959
MflI	RGATCY	4 cut(s)	150, 195, 395, 547
MluCI	AATT	3 cut(s)	140, 244, 1016
MluI	ACGCGT	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	856
MmeI	TCCRAC	1 cut(s)	638
MseI	TTAA	4 cut(s)	225, 354, 821, 891
MspI	CCGG	1 cut(s)	471
MspR9I	CCNGG	3 cut(s)	654, 708, 948
Mva1269I	GAATGC	1 cut(s)	933
MvaI	CCWGG	3 cut(s)	654, 708, 948
MvnI	CGCG	3 cut(s)	44, 118, 368
MwoI	GCNNNNNNNGC	2 cut(s)	319, 328
NlaIII	CATG	4 cut(s)	88, 871, 905, 1053
NlaIV	GGNNCC	1 cut(s)	478
PaeR7I	CTCGAG	1 cut(s)	289
PagI	TCATGA	3 cut(s)	867, 901, 1049
PciSI	GCTCTTC	1 cut(s)	696
PctI	GAATGC	1 cut(s)	933
PfeI	GAWTC	4 cut(s)	34, 106, 523, 711
PflMI	CCANNNNNTGG	1 cut(s)	90
PinAI	ACCGGT	1 cut(s)	470
PkrI	GCNGC	2 cut(s)	321, 324
PleI	GAGTC	1 cut(s)	856
PpsI	GAGTC	1 cut(s)	856
Psp6I	CCWGG	3 cut(s)	652, 706, 946
PspGI	CCWGG	3 cut(s)	652, 706, 946
PspN4I	GGNNCC	1 cut(s)	478
PsuI	RGATCY	4 cut(s)	150, 195, 395, 547
SapI	GCTCTTC	1 cut(s)	696
SaqAI	TTAA	4 cut(s)	225, 354, 821, 891
SatI	GCNGC	2 cut(s)	320, 323
SchI	GAGTC	1 cut(s)	856
ScrFI	CCNGG	3 cut(s)	654, 708, 948
SexAI	ACCWGGT	1 cut(s)	652
SfaNI	GCATC	4 cut(s)	103, 334, 564, 589
SfcI	CTRYAG	1 cut(s)	639
Sfr274I	CTCGAG	1 cut(s)	289
SgrAI	CRCCGGYG	1 cut(s)	470
SlaI	CTCGAG	1 cut(s)	289
SmlI	CTYRAG	2 cut(s)	59, 289
SmoI	CTYRAG	2 cut(s)	59, 289
Sse9I	AATT	3 cut(s)	140, 244, 1016
SsiI	CCGC	6 cut(s)	320, 329, 368, 492, 577, 626
SspMI	CTAG	2 cut(s)	360, 585
StyD4I	CCNGG	3 cut(s)	652, 706, 946
TaaI	ACNGT	1 cut(s)	835
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	5 cut(s)	113, 121, 290, 995, 1020
TasI	AATT	3 cut(s)	140, 244, 1016
TauI	GCSGC	1 cut(s)	322
TfiI	GAWTC	4 cut(s)	34, 106, 523, 711
Tru1I	TTAA	4 cut(s)	225, 354, 821, 891
Tru9I	TTAA	4 cut(s)	225, 354, 821, 891
TseI	GCWGC	1 cut(s)	322
TspDTI	ATGAA	3 cut(s)	243, 296, 714
TspGWI	ACGGA	3 cut(s)	62, 163, 896
Van91I	CCANNNNNTGG	1 cut(s)	90
XagI	CCTNNNNNAGG	1 cut(s)	690
XapI	RAATTY	2 cut(s)	140, 1016
XhoI	CTCGAG	1 cut(s)	289
XspI	CTAG	2 cut(s)	360, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.