Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0010652

Physical Location & Seq

Genomic Coordinates Forward (+)

23741357 .. 23742010

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1162200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATTTGGCACCCAGACAAAAACCCCGTCGATGAGCGGTTAGAAGCGGAAGCCAAGTTCAAGCAAATCTCCAAGGCCTACAACGTCCTTGGCAACCCCGCCAAGCACCAGATCTACGACCTCTACAGCGATGAGGCTCTGAAATCGGGAACGTCCAATGATGGTGGGCCAGAGTTTGCAGGACCCAGTGGGGCTGCGCCTGCGAGGAAGGCCAAAGGGAAATTTGAAAATTTGTTGCCCTGCAGCTTGGAAGAGCTCTACAAGGGTGTCAAGAAGAAGATGAAGATTTTCAGAAACATCTACGATGCCGTTGTTACTTGTAAGGTTCGGACTGTGGAGGAGATTTTGACTATTGAGATCAGACCAGGTTGGAAGAAGGGCACAAAGATCACCTTCCCTGAGAAGGGTAACCAAGAGCAAATCCAACTTCAAGCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

147

Amino Acids

16.38

Weight (kDa)

9.13

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	2 - 40	9.6e-11	DnaJ domain
DnaJ_C	PF01556	79 - 140	1.2e-10	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47940
fragaria_vesca	FvH4_5g15710
malus_domestica	MD06G1186100.v1.1 MD07G1162200.v1.1 MD07G1162300.v1.1 MD14G1192300.v1.1
prunus_persica	Prupe.5G184900_v2.0.a1
pyrus_communis	pycom06g16550 pycom14g16000
rosa_chinensis	RchiOBHm_Chr7g0180401
rosa_laevigata	RLG00000005270
rosa_multiflora	Rmu_sc0018872.1_g000002 Rmu_sc0042636.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272920
rosa_rugosa	Rorug06G0432800
rosa_samantha	Rh7AG033400 Rh7BG033300 Rh7CG035300 Rh7DG033800
rosa_wichuraiana	Rw7G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	9
AccBSI	CCGCTC	1 cut(s)	37
AciI	CCGC	3 cut(s)	37, 47, 99
AcsI	RAATTY	2 cut(s)	221, 229
AfiI	CCNNNNNNNGG	2 cut(s)	403, 404
AgsI	TTSAA	3 cut(s)	61, 227, 431
AjnI	CCWGG	1 cut(s)	364
AloI	GAACNNNNNNTCC	2 cut(s)	41, 73
AluBI	AGCT	3 cut(s)	246, 256, 434
AluI	AGCT	3 cut(s)	246, 256, 434
Alw21I	GWGCWC	1 cut(s)	258
AoxI	GGCC	3 cut(s)	75, 167, 210
ApeKI	GCWGC	2 cut(s)	194, 243
ApoI	RAATTY	2 cut(s)	221, 229
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
Asp700I	GAANNNNTTC	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	167, 182
AsuHPI	GGTGA	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	181, 255
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	293
BciT130I	CCWGG	1 cut(s)	366
BfmI	CTRYAG	2 cut(s)	124, 241
BglII	AGATCT	1 cut(s)	111
BisI	GCNGC	2 cut(s)	195, 244
BlsI	GCNGC	2 cut(s)	196, 245
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	2 cut(s)	167, 182
BmiI	GGNNCC	2 cut(s)	11, 184
BmrFI	CCNGG	1 cut(s)	366
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	295
BmuI	ACTGGG	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	72, 88
Bsc4I	CCNNNNNNNGG	2 cut(s)	403, 404
Bse1I	ACTGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	72, 88
BseLI	CCNNNNNNNGG	2 cut(s)	403, 404
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	353
BseSI	GKGCMC	1 cut(s)	383
BseXI	GCAGC	2 cut(s)	181, 255
BshFI	GGCC	3 cut(s)	77, 169, 212
BshNI	GGYRCC	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	403, 404
BsnI	GGCC	3 cut(s)	77, 169, 212
Bsp1286I	GDGCHC	2 cut(s)	258, 383
Bsp143I	GATC	3 cut(s)	111, 357, 387
BspACI	CCGC	3 cut(s)	37, 47, 99
BspANI	GGCC	3 cut(s)	77, 169, 212
BspCNI	CTCAG	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	11, 184
BspMAI	CTGCAG	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	9
BsrBI	CCGCTC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	2 cut(s)	72, 88
BssMI	GATC	3 cut(s)	111, 357, 387
BssT1I	CCWWGG	2 cut(s)	72, 88
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	399
BstEII	GGTNACC	1 cut(s)	407
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	3 cut(s)	114, 360, 390
BstMBI	GATC	3 cut(s)	111, 357, 387
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 209
BstNI	CCWGG	1 cut(s)	366
BstPI	GGTNACC	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	2 cut(s)	124, 241
BstSLI	GKGCMC	1 cut(s)	383
BstV1I	GCAGC	2 cut(s)	181, 255
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuRI	GGCC	3 cut(s)	77, 169, 212
BtgZI	GCGATG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	201
CfoI	GCGC	1 cut(s)	199
Cfr13I	GGNCC	2 cut(s)	167, 182
CsiI	ACCWGGT	1 cut(s)	364
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviJI	RGCY	9 cut(s)	53, 77, 137, 169, 194, 212, 246, 256, 434
CviKI_1	RGCY	9 cut(s)	53, 77, 137, 169, 194, 212, 246, 256, 434
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	3 cut(s)	113, 359, 389
DpnII	GATC	3 cut(s)	111, 357, 387
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	2 cut(s)	72, 88
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	256
Eco91I	GGTNACC	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	256
EcoO109I	RGGNCCY	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	72, 88
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	2 cut(s)	72, 88
FaiI	YATR	1 cut(s)	439
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	195, 244
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	2 cut(s)	195, 244
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	2 cut(s)	195, 244
HaeIII	GGCC	3 cut(s)	77, 169, 212
HhaI	GCGC	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HphI	GGTGA	1 cut(s)	382
Hpy188I	TCNGA	4 cut(s)	141, 293, 330, 362
Hpy188III	TCNNGA	2 cut(s)	147, 271
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	4 cut(s)	202, 370, 397, 403
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	2 cut(s)	84, 152
HpyCH4V	TGCA	2 cut(s)	179, 243
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 209
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	2 cut(s)	84, 152
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	3 cut(s)	111, 357, 387
LguI	GCTCTTC	1 cut(s)	246
Lsp1109I	GCAGC	2 cut(s)	181, 255
LweI	GCATC	1 cut(s)	295
MabI	ACCWGGT	1 cut(s)	364
MaeII	ACGT	2 cut(s)	84, 152
MaeIII	GTNAC	2 cut(s)	313, 407
MalI	GATC	3 cut(s)	113, 359, 389
MbiI	CCGCTC	1 cut(s)	37
MboI	GATC	3 cut(s)	111, 357, 387
MboII	GAAGA	5 cut(s)	263, 286, 289, 295, 385
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	2 cut(s)	258, 383
MluCI	AATT	2 cut(s)	221, 229
MmeI	TCCRAC	1 cut(s)	350
MnlI	CCTC	4 cut(s)	127, 131, 198, 331
MroXI	GAANNNNTTC	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	2 cut(s)	200, 209
NdeII	GATC	3 cut(s)	111, 357, 387
NlaIV	GGNNCC	2 cut(s)	11, 184
PceI	AGGCCT	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	287
PkrI	GCNGC	2 cut(s)	196, 245
PpuMI	RGGWCCY	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	364
PspEI	GGTNACC	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	2 cut(s)	11, 184
PspPI	GGNCC	2 cut(s)	167, 182
PspPPI	RGGWCCY	1 cut(s)	182
PstI	CTGCAG	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	111
SacI	GAGCTC	1 cut(s)	258
SapI	GCTCTTC	1 cut(s)	246
SatI	GCNGC	2 cut(s)	195, 244
Sau3AI	GATC	3 cut(s)	111, 357, 387
Sau96I	GGNCC	2 cut(s)	167, 182
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	2 cut(s)	258, 383
SetI	ASST	9 cut(s)	87, 123, 155, 248, 258, 327, 370, 395, 436
SexAI	ACCWGGT	1 cut(s)	364
SfaNI	GCATC	1 cut(s)	295
SfcI	CTRYAG	2 cut(s)	124, 241
SinI	GGWCC	1 cut(s)	182
Sse9I	AATT	2 cut(s)	221, 229
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	3 cut(s)	37, 47, 99
SstI	GAGCTC	1 cut(s)	258
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	2 cut(s)	72, 88
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	2 cut(s)	87, 155
TaqI	TCGA	1 cut(s)	30
TasI	AATT	2 cut(s)	221, 229
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	2 cut(s)	194, 243
TspDTI	ATGAA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	2 cut(s)	221, 229
XmnI	GAANNNNTTC	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.