Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010652

Physical Location & Seq

Genomic Coordinates Reverse (-)

66384551 .. 66387337

Gene Structure 2787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005270

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGGGGTCGATTACTACAACATACTGAAGGTGAACCGGAACGCGAGCGAGGACGACTTGAAGAAGGCGTACAAGCGGCTGGCGATGATTTGGCACCCGGACAAAAACCCAGCCGGAAAACGACCCGAGGCCGAGTCCAAGTTCAAGCAAATCTCCGAGGCCTACGACGTCCTCTCCGACCCCACCAAGCGCCAGATCTACGATCTCTACGGCGAGGAGGCTCTCAAATCCGGCCAGTTCCCCCCTCCCTCTTCCTCCCGCTCCGCCGCGCCGCACCAGCACCACCAACCCCACTACTACCACCGCGGCAACCACAACGCCACGTCGTTTCGGTTCAATCCTAGGGACGCGGAGGACATTTACGCCGAGATTTTTGGATCGGAGGGCGGCGGCGGAGGGGGCGGCGGAGGAGCTGGAGGGAGTGGCGGCGGAGGGAGGGCGTATAGGGACGGGTTCTTCAGGACGTCGAATGGGGCCGGTGGGCCGGACTTCGCCGGGACCAGCAGTGGGCCTGGGCCGGGACTGAGGAAGGCCAATGCCCTGGAGAATAACCTGGCTTGCAGCTTGGAGGAGCTGTATAAGGGATTCAAGAAGAAGATGAAGATTTCGAGAAGCATTTTCGATTCGGCTGGTAAGGTTCGGACTCTGGAGGAGATATTAACCATTGAGATCAAACCTGGTTGGAAGAAAGGCACCAAGATAACCTTCCCTGAGAAGGGTAATCAAGAGCCTGGTGTTATTCCAGCAGATCTGATTTTTGTAGTTGATGAAAAACCTCATGCACTTTATAAGAGGGACGGTAATGATCTGGTGGTGAACCAGGAGATCACACTGCTGGAGGCACTCACTGGGAAGAATCTTGAACTAACTACCCTGGATGGAAGGAATCTTATGATCCCGTTGACCGATATCATCAAACCTGGGGCTGAAATGGTTGTACCAAATGAAGGAATGCCAATCTCAAAAGAACCGGGGAGAAAGGGAAATTTGAGAATCAAGTTTGACGTCAAGTATCCTTCAAGACTTACTACAGAACAGAAATCAGATTTGAAAAGAGTTTTGGGAGGAGTTTCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

360

Amino Acids

39.24

Weight (kDa)

9.14

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 68	2.5e-26	DnaJ domain
DnaJ_C	PF01556	182 - 339	5.4e-40	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47940
fragaria_vesca	FvH4_5g15710
malus_domestica	MD06G1186100.v1.1 MD07G1162200.v1.1 MD07G1162300.v1.1 MD14G1192300.v1.1
prunus_persica	Prupe.5G184900_v2.0.a1
pyrus_communis	pycom06g16550 pycom14g16000
rosa_chinensis	RchiOBHm_Chr7g0180401
rosa_laevigata	RLG00000005270
rosa_multiflora	Rmu_sc0018872.1_g000002 Rmu_sc0042636.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272920
rosa_rugosa	Rorug06G0432800
rosa_samantha	Rh7AG033400 Rh7BG033300 Rh7CG035300 Rh7DG033800
rosa_wichuraiana	Rw7G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	789
AatII	GACGTC	3 cut(s)	171, 467, 1008
AccB1I	GGYRCC	2 cut(s)	93, 692
AccBSI	CCGCTC	1 cut(s)	261
AccII	CGCG	4 cut(s)	44, 269, 306, 350
AclWI	GGATC	2 cut(s)	385, 889
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	985
AcuI	CTGAAG	2 cut(s)	47, 442
AcyI	GRCGYC	3 cut(s)	168, 464, 1005
AfaI	GTAC	2 cut(s)	71, 939
AfiI	CCNNNNNNNGG	5 cut(s)	507, 518, 715, 716, 947
AgsI	TTSAA	7 cut(s)	61, 145, 337, 589, 863, 1020, 1051
AjiI	CACGTC	1 cut(s)	324
AjnI	CCWGG	8 cut(s)	511, 540, 552, 676, 730, 819, 873, 919
AjuI	GAANNNNNNNTTGG	4 cut(s)	689, 721, 1043, 1075
AluBI	AGCT	3 cut(s)	413, 564, 574
AluI	AGCT	3 cut(s)	413, 564, 574
AlwI	GGATC	2 cut(s)	385, 889
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	8 cut(s)	129, 159, 232, 474, 482, 509, 515, 531
ApeKI	GCWGC	1 cut(s)	561
ApoI	RAATTY	1 cut(s)	985
AspA2I	CCTAGG	1 cut(s)	341
AspLEI	GCGC	2 cut(s)	192, 271
AspS9I	GGNCC	5 cut(s)	474, 482, 498, 509, 515
AsuC2I	CCSGG	4 cut(s)	98, 496, 519, 972
AsuHPI	GGTGA	2 cut(s)	43, 826
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	498
AvrII	CCTAGG	1 cut(s)	341
BanI	GGYRCC	2 cut(s)	93, 692
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbvI	GCAGC	1 cut(s)	573
BccI	CCATC	1 cut(s)	872
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	8 cut(s)	513, 542, 554, 678, 732, 821, 875, 921
BciVI	GTATCC	1 cut(s)	1023
BcnI	CCSGG	4 cut(s)	98, 496, 519, 972
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	1029
BfoI	RGCGCY	1 cut(s)	193
BfuI	GTATCC	1 cut(s)	1023
BglII	AGATCT	2 cut(s)	195, 748
BisI	GCNGC	9 cut(s)	77, 267, 272, 307, 388, 391, 403, 427, 562
BlnI	CCTAGG	1 cut(s)	341
BlsI	GCNGC	9 cut(s)	78, 268, 273, 308, 389, 392, 404, 428, 563
Bme18I	GGWCC	1 cut(s)	498
BmeT110I	CYCGRG	1 cut(s)	125
BmgBI	CACGTC	1 cut(s)	324
BmgT120I	GGNCC	5 cut(s)	474, 482, 498, 509, 515
BmiI	GGNNCC	4 cut(s)	95, 475, 499, 694
BmrI	ACTGGG	1 cut(s)	858
BmuI	ACTGGG	1 cut(s)	858
BpmI	CTGGAG	4 cut(s)	435, 563, 668, 857
BpuMI	CCSGG	4 cut(s)	98, 496, 519, 972
BsaHI	GRCGYC	3 cut(s)	168, 464, 1005
BsaJI	CCNNGG	9 cut(s)	126, 156, 304, 341, 512, 540, 873, 920, 971
BsaWI	WCCGGW	1 cut(s)	36
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 560, 590
Bsc4I	CCNNNNNNNGG	5 cut(s)	507, 518, 715, 716, 947
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	2 cut(s)	235, 853
BseBI	CCWGG	8 cut(s)	513, 542, 554, 678, 732, 821, 875, 921
BseDI	CCNNGG	9 cut(s)	126, 156, 304, 341, 512, 540, 873, 920, 971
BseGI	GGATG	1 cut(s)	883
BseLI	CCNNNNNNNGG	5 cut(s)	507, 518, 715, 716, 947
BseMII	CTCAG	2 cut(s)	515, 702
BseNI	ACTGG	2 cut(s)	235, 853
BseRI	GAGGAG	5 cut(s)	230, 423, 584, 665, 1080
BseXI	GCAGC	1 cut(s)	573
BseYI	CCCAGC	1 cut(s)	109
Bsh1236I	CGCG	4 cut(s)	44, 269, 306, 350
BshFI	GGCC	8 cut(s)	131, 161, 234, 476, 484, 511, 517, 533
BshNI	GGYRCC	2 cut(s)	93, 692
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	9 cut(s)	37, 98, 114, 231, 477, 485, 495, 518, 971
BslFI	GGGAC	5 cut(s)	359, 461, 511, 534, 809
BslI	CCNNNNNNNGG	5 cut(s)	507, 518, 715, 716, 947
BsmFI	GGGAC	5 cut(s)	359, 461, 511, 534, 809
BsmI	GAATGC	1 cut(s)	957
BsnI	GGCC	8 cut(s)	131, 161, 234, 476, 484, 511, 517, 533
BsoBI	CYCGRG	1 cut(s)	125
Bsp143I	GATC	8 cut(s)	195, 202, 377, 669, 748, 805, 825, 894
BspANI	GGCC	8 cut(s)	131, 161, 234, 476, 484, 511, 517, 533
BspCNI	CTCAG	2 cut(s)	516, 703
BspFNI	CGCG	4 cut(s)	44, 269, 306, 350
BspLI	GGNNCC	4 cut(s)	95, 475, 499, 694
BspPI	GGATC	2 cut(s)	385, 889
BspT107I	GGYRCC	2 cut(s)	93, 692
BsrBI	CCGCTC	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	476
BsrI	ACTGG	2 cut(s)	235, 853
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	9 cut(s)	126, 156, 304, 341, 512, 540, 873, 920, 971
BssMI	GATC	8 cut(s)	195, 202, 377, 669, 748, 805, 825, 894
BssNI	GRCGYC	3 cut(s)	168, 464, 1005
BssT1I	CCWWGG	1 cut(s)	341
Bst2UI	CCWGG	8 cut(s)	513, 542, 554, 678, 732, 821, 875, 921
Bst4CI	ACNGT	1 cut(s)	800
Bst6I	CTCTTC	1 cut(s)	256
BstACI	GRCGYC	3 cut(s)	168, 464, 1005
BstC8I	GCNNGC	3 cut(s)	46, 81, 559
BstDEI	CTNAG	2 cut(s)	524, 711
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	883
BstFNI	CGCG	4 cut(s)	44, 269, 306, 350
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	2 cut(s)	192, 271
BstKTI	GATC	8 cut(s)	198, 205, 380, 672, 751, 808, 828, 897
BstMBI	GATC	8 cut(s)	195, 202, 377, 669, 748, 805, 825, 894
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 399
BstNI	CCWGG	8 cut(s)	513, 542, 554, 678, 732, 821, 875, 921
BstSFI	CTRYAG	1 cut(s)	1029
BstUI	CGCG	4 cut(s)	44, 269, 306, 350
BstV1I	GCAGC	1 cut(s)	573
BstX2I	RGATCY	2 cut(s)	195, 748
BstXI	CCANNNNNNTGG	1 cut(s)	541
BstYI	RGATCY	2 cut(s)	195, 748
BsuI	GTATCC	1 cut(s)	1023
BsuRI	GGCC	8 cut(s)	131, 161, 234, 476, 484, 511, 517, 533
BtgI	CCRYGG	1 cut(s)	304
BtgZI	GCGATG	1 cut(s)	98
BtrI	CACGTC	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	883
BtsI	GCAGTG	2 cut(s)	511, 830
BtsIMutI	CAGTG	3 cut(s)	511, 830, 846
Cac8I	GCNNGC	3 cut(s)	46, 81, 559
CfoI	GCGC	2 cut(s)	192, 271
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	5 cut(s)	474, 482, 498, 509, 515
Cfr42I	CCGCGG	1 cut(s)	307
CseI	GACGC	1 cut(s)	356
CsiI	ACCWGGT	1 cut(s)	676
Csp6I	GTAC	2 cut(s)	70, 938
CviAII	CATG	1 cut(s)	779
CviQI	GTAC	2 cut(s)	70, 938
DdeI	CTNAG	2 cut(s)	524, 711
DpnI	GATC	8 cut(s)	197, 204, 379, 671, 750, 807, 827, 896
DpnII	GATC	8 cut(s)	195, 202, 377, 669, 748, 805, 825, 894
EaeI	YGGCCR	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
EciI	GGCGGA	4 cut(s)	253, 408, 420, 444
Eco130I	CCWWGG	1 cut(s)	341
Eco147I	AGGCCT	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	910
Eco47I	GGWCC	1 cut(s)	498
Eco57I	CTGAAG	2 cut(s)	47, 442
Eco88I	CYCGRG	1 cut(s)	125
EcoRII	CCWGG	8 cut(s)	511, 540, 552, 676, 730, 819, 873, 919
EcoRV	GATATC	1 cut(s)	910
EcoT14I	CCWWGG	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	1 cut(s)	782
FaiI	YATR	7 cut(s)	23, 444, 579, 780, 789, 893, 1078
FalI	AAGNNNNNCTT	2 cut(s)	689, 721
FaqI	GGGAC	5 cut(s)	359, 461, 511, 534, 809
FatI	CATG	1 cut(s)	778
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	9 cut(s)	77, 267, 272, 307, 388, 391, 403, 427, 562
FokI	GGATG	1 cut(s)	890
Fsp4HI	GCNGC	9 cut(s)	77, 267, 272, 307, 388, 391, 403, 427, 562
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	2 cut(s)	191, 270
GluI	GCNGC	9 cut(s)	77, 267, 272, 307, 388, 391, 403, 427, 562
GsaI	CCCAGC	1 cut(s)	113
GsuI	CTGGAG	4 cut(s)	435, 563, 668, 857
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	8 cut(s)	131, 161, 234, 476, 484, 511, 517, 533
HapII	CCGG	9 cut(s)	37, 98, 114, 231, 477, 485, 495, 518, 971
HgaI	GACGC	1 cut(s)	356
HhaI	GCGC	2 cut(s)	192, 271
Hin1I	GRCGYC	3 cut(s)	168, 464, 1005
Hin1II	CATG	1 cut(s)	782
Hin6I	GCGC	2 cut(s)	190, 269
HinP1I	GCGC	2 cut(s)	190, 269
HincII	GTYRAC	1 cut(s)	903
HindII	GTYRAC	1 cut(s)	903
HinfI	GANTC	7 cut(s)	134, 585, 623, 643, 856, 886, 993
HpaII	CCGG	9 cut(s)	37, 98, 114, 231, 477, 485, 495, 518, 971
HphI	GGTGA	2 cut(s)	43, 826
Hpy166II	GTNNAC	3 cut(s)	34, 817, 903
Hpy188I	TCNGA	6 cut(s)	157, 178, 382, 642, 753, 1045
Hpy188III	TCNNGA	7 cut(s)	460, 589, 609, 647, 725, 860, 1020
Hpy8I	GTNNAC	3 cut(s)	34, 817, 903
Hpy99I	CGWCG	3 cut(s)	170, 328, 469
HpyAV	CCTTC	8 cut(s)	22, 58, 523, 709, 715, 876, 941, 1026
HpyCH4III	ACNGT	1 cut(s)	800
HpyCH4IV	ACGT	4 cut(s)	168, 323, 464, 1005
HpyCH4V	TGCA	2 cut(s)	561, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 399
HpyF3I	CTNAG	2 cut(s)	524, 711
HpySE526I	ACGT	4 cut(s)	168, 323, 464, 1005
Hsp92I	GRCGYC	3 cut(s)	168, 464, 1005
Hsp92II	CATG	1 cut(s)	782
HspAI	GCGC	2 cut(s)	190, 269
KspI	CCGCGG	1 cut(s)	307
Kzo9I	GATC	8 cut(s)	195, 202, 377, 669, 748, 805, 825, 894
LmnI	GCTCC	3 cut(s)	266, 410, 571
Lsp1109I	GCAGC	1 cut(s)	573
MabI	ACCWGGT	1 cut(s)	676
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	4 cut(s)	168, 323, 464, 1005
MalI	GATC	8 cut(s)	197, 204, 379, 671, 750, 807, 827, 896
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	8 cut(s)	195, 202, 377, 669, 748, 805, 825, 894
MboII	GAAGA	8 cut(s)	73, 243, 448, 604, 607, 613, 697, 865
MflI	RGATCY	2 cut(s)	195, 748
MluCI	AATT	1 cut(s)	985
MlyI	GAGTC	2 cut(s)	143, 637
MmeI	TCCRAC	2 cut(s)	201, 662
MseI	TTAA	1 cut(s)	659
MspA1I	CMGCKG	1 cut(s)	306
MspI	CCGG	9 cut(s)	37, 98, 114, 231, 477, 485, 495, 518, 971
Mva1269I	GAATGC	1 cut(s)	957
MvaI	CCWGG	8 cut(s)	513, 542, 554, 678, 732, 821, 875, 921
MvnI	CGCG	4 cut(s)	44, 269, 306, 350
MwoI	GCNNNNNNNGC	2 cut(s)	277, 399
NciI	CCSGG	4 cut(s)	98, 496, 519, 972
NdeII	GATC	8 cut(s)	195, 202, 377, 669, 748, 805, 825, 894
NlaIII	CATG	1 cut(s)	782
NlaIV	GGNNCC	4 cut(s)	95, 475, 499, 694
NmeAIII	GCCGAG	2 cut(s)	157, 391
PceI	AGGCCT	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PctI	GAATGC	1 cut(s)	957
PfeI	GAWTC	5 cut(s)	585, 623, 856, 886, 993
PkrI	GCNGC	9 cut(s)	78, 268, 273, 308, 389, 392, 404, 428, 563
PleI	GAGTC	2 cut(s)	142, 637
PpsI	GAGTC	2 cut(s)	142, 637
PsiI	TTATAA	1 cut(s)	789
Psp6I	CCWGG	8 cut(s)	511, 540, 552, 676, 730, 819, 873, 919
PspFI	CCCAGC	1 cut(s)	109
PspGI	CCWGG	8 cut(s)	511, 540, 552, 676, 730, 819, 873, 919
PspN4I	GGNNCC	4 cut(s)	95, 475, 499, 694
PspPI	GGNCC	5 cut(s)	474, 482, 498, 509, 515
PsuI	RGATCY	2 cut(s)	195, 748
RsaI	GTAC	2 cut(s)	71, 939
RsaNI	GTAC	2 cut(s)	70, 938
SacII	CCGCGG	1 cut(s)	307
SaqAI	TTAA	1 cut(s)	659
SatI	GCNGC	9 cut(s)	77, 267, 272, 307, 388, 391, 403, 427, 562
Sau3AI	GATC	8 cut(s)	195, 202, 377, 669, 748, 805, 825, 894
Sau96I	GGNCC	5 cut(s)	474, 482, 498, 509, 515
SchI	GAGTC	2 cut(s)	143, 637
SexAI	ACCWGGT	1 cut(s)	676
SfcI	CTRYAG	1 cut(s)	1029
Sfr303I	CCGCGG	1 cut(s)	307
SgrBI	CCGCGG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	498
Sse9I	AATT	1 cut(s)	985
SseBI	AGGCCT	1 cut(s)	161
SspMI	CTAG	1 cut(s)	342
StuI	AGGCCT	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	1 cut(s)	800
TaiI	ACGT	4 cut(s)	171, 326, 467, 1008
TaqI	TCGA	4 cut(s)	9, 467, 608, 621
TaqII	GACCGA	1 cut(s)	920
TasI	AATT	1 cut(s)	985
TauI	GCSGC	8 cut(s)	79, 269, 274, 309, 390, 393, 405, 429
TfiI	GAWTC	5 cut(s)	585, 623, 856, 886, 993
Tru1I	TTAA	1 cut(s)	659
Tru9I	TTAA	1 cut(s)	659
TscAI	CASTG	3 cut(s)	511, 837, 853
TseI	GCWGC	1 cut(s)	561
TspDTI	ATGAA	4 cut(s)	614, 783, 960, 1062
TspRI	CASTG	3 cut(s)	511, 837, 853
VpaK11BI	GGWCC	1 cut(s)	498
XapI	RAATTY	1 cut(s)	985
XmaJI	CCTAGG	1 cut(s)	341
XspI	CTAG	1 cut(s)	342
ZraI	GACGTC	3 cut(s)	169, 465, 1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.