Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018872.1

Orthogroup ID

OG0010652

Physical Location & Seq

Genomic Coordinates Reverse (-)

2086 .. 2459

Gene Structure 374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018872.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 374 bp

tccctgagaagggtaatcaagagcctggtgttattccagcagatctgatttttgtagttgatgaaaaacctcatgcactttataagagggacggtaatgatctggtggtgaaccaggagatcacactgctggaggcactcactgggaagaatcttgaactaactaccctggatggaaggaatcttatgatcccgttgaccgatatcatcaaacctggggctgaaatggttgtaccaaatgaaggaatgccaatctcaaaagaaccggggagaaagggaaatttgagaatcaggtttgacgtcaagtatccttcaagacttactacagaacagaaatcagatttgaaaagagttttgggaggagtttcattatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

123

Amino Acids

13.59

Weight (kDa)

5.9

Isoelectric Point (pI)

31.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47940
fragaria_vesca	FvH4_5g15710
malus_domestica	MD06G1186100.v1.1 MD07G1162200.v1.1 MD07G1162300.v1.1 MD14G1192300.v1.1
prunus_persica	Prupe.5G184900_v2.0.a1
pyrus_communis	pycom06g16550 pycom14g16000
rosa_chinensis	RchiOBHm_Chr7g0180401
rosa_laevigata	RLG00000005270
rosa_multiflora	Rmu_sc0018872.1_g000002 Rmu_sc0042636.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272920
rosa_rugosa	Rorug06G0432800
rosa_samantha	Rh7AG033400 Rh7BG033300 Rh7CG035300 Rh7DG033800
rosa_wichuraiana	Rw7G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AatII	GACGTC	1 cut(s)	302
AclWI	GGATC	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	279
AcyI	GRCGYC	1 cut(s)	299
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	3 cut(s)	9, 10, 241
AgsI	TTSAA	3 cut(s)	157, 314, 345
AjnI	CCWGG	4 cut(s)	24, 113, 167, 213
AjuI	GAANNNNNNNTTGG	2 cut(s)	337, 369
AlwI	GGATC	1 cut(s)	183
ApoI	RAATTY	1 cut(s)	279
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	120
BccI	CCATC	1 cut(s)	166
BciT130I	CCWGG	4 cut(s)	26, 115, 169, 215
BciVI	GTATCC	1 cut(s)	317
BcnI	CCSGG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	323
BfuI	GTATCC	1 cut(s)	317
BglII	AGATCT	1 cut(s)	42
Bme1390I	CCNGG	5 cut(s)	26, 115, 169, 215, 266
BmrFI	CCNGG	5 cut(s)	26, 115, 169, 215, 266
BmrI	ACTGGG	1 cut(s)	152
BmuI	ACTGGG	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	151
BpuMI	CCSGG	1 cut(s)	266
BsaHI	GRCGYC	1 cut(s)	299
BsaJI	CCNNGG	3 cut(s)	167, 214, 265
Bsc4I	CCNNNNNNNGG	3 cut(s)	9, 10, 241
Bse1I	ACTGG	1 cut(s)	147
BseBI	CCWGG	4 cut(s)	26, 115, 169, 215
BseDI	CCNNGG	3 cut(s)	167, 214, 265
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	3 cut(s)	9, 10, 241
BseNI	ACTGG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	3 cut(s)	9, 10, 241
BsmFI	GGGAC	1 cut(s)	103
BsmI	GAATGC	1 cut(s)	251
Bsp143I	GATC	4 cut(s)	42, 99, 119, 188
BspPI	GGATC	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	3 cut(s)	167, 214, 265
BssMI	GATC	4 cut(s)	42, 99, 119, 188
BssNI	GRCGYC	1 cut(s)	299
Bst2UI	CCWGG	4 cut(s)	26, 115, 169, 215
Bst4CI	ACNGT	1 cut(s)	94
BstACI	GRCGYC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	177
BstKTI	GATC	4 cut(s)	45, 102, 122, 191
BstMBI	GATC	4 cut(s)	42, 99, 119, 188
BstNI	CCWGG	4 cut(s)	26, 115, 169, 215
BstSCI	CCNGG	5 cut(s)	24, 113, 167, 213, 264
BstSFI	CTRYAG	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuI	GTATCC	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	124
BtsIMutI	CAGTG	2 cut(s)	124, 140
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	2 cut(s)	24, 220
CviKI_1	RGCY	2 cut(s)	24, 220
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	1 cut(s)	5
DpnI	GATC	4 cut(s)	44, 101, 121, 190
DpnII	GATC	4 cut(s)	42, 99, 119, 188
Eco32I	GATATC	1 cut(s)	204
EcoRII	CCWGG	4 cut(s)	24, 113, 167, 213
EcoRV	GATATC	1 cut(s)	204
FaeI	CATG	1 cut(s)	76
FaiI	YATR	4 cut(s)	74, 83, 187, 372
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	1 cut(s)	72
FokI	GGATG	1 cut(s)	184
GsuI	CTGGAG	1 cut(s)	151
HapII	CCGG	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	197
HindII	GTYRAC	1 cut(s)	197
HinfI	GANTC	3 cut(s)	150, 180, 287
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	1 cut(s)	120
Hpy166II	GTNNAC	2 cut(s)	111, 197
Hpy188I	TCNGA	2 cut(s)	47, 339
Hpy188III	TCNNGA	3 cut(s)	19, 154, 314
Hpy8I	GTNNAC	2 cut(s)	111, 197
HpyAV	CCTTC	4 cut(s)	3, 170, 235, 320
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	1 cut(s)	76
HpyF3I	CTNAG	1 cut(s)	5
HpySE526I	ACGT	1 cut(s)	299
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	1 cut(s)	76
Kzo9I	GATC	4 cut(s)	42, 99, 119, 188
MaeII	ACGT	1 cut(s)	299
MalI	GATC	4 cut(s)	44, 101, 121, 190
MboI	GATC	4 cut(s)	42, 99, 119, 188
MboII	GAAGA	1 cut(s)	159
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	1 cut(s)	279
MnlI	CCTC	4 cut(s)	80, 80, 126, 352
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	5 cut(s)	26, 115, 169, 215, 266
Mva1269I	GAATGC	1 cut(s)	251
MvaI	CCWGG	4 cut(s)	26, 115, 169, 215
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	4 cut(s)	42, 99, 119, 188
NlaIII	CATG	1 cut(s)	76
PctI	GAATGC	1 cut(s)	251
PfeI	GAWTC	3 cut(s)	150, 180, 287
PsiI	TTATAA	1 cut(s)	83
Psp6I	CCWGG	4 cut(s)	24, 113, 167, 213
PspGI	CCWGG	4 cut(s)	24, 113, 167, 213
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
Sau3AI	GATC	4 cut(s)	42, 99, 119, 188
ScrFI	CCNGG	5 cut(s)	26, 115, 169, 215, 266
SetI	ASST	4 cut(s)	72, 216, 295, 302
SfcI	CTRYAG	1 cut(s)	323
Sse9I	AATT	1 cut(s)	279
StyD4I	CCNGG	5 cut(s)	24, 113, 167, 213, 264
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	302
TaqII	GACCGA	1 cut(s)	214
TasI	AATT	1 cut(s)	279
TfiI	GAWTC	3 cut(s)	150, 180, 287
TscAI	CASTG	2 cut(s)	131, 147
TspDTI	ATGAA	3 cut(s)	77, 254, 356
TspRI	CASTG	2 cut(s)	131, 147
XapI	RAATTY	1 cut(s)	279
ZraI	GACGTC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.