Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010652

Physical Location & Seq

Genomic Coordinates Reverse (-)

64868875 .. 64872134

Gene Structure 3260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGGGGTCGATTACTACAACATACTGAAGGTGAACCGGAACGCGAGCGAGGAAGACTTGAAGAAGGCGTACAAGCGGCTGGCAATGATTTGGCACCCGGACAAAAACCCGGCCGGAAAACGACCCGAGGCCGAGTCCAAGTTCAAGCAAATCTCCGAGGCCTACGACGTCCTCTCCGACCCCACCAAGCGCCAGATCTACGATCTCTACGGCGAGGAGGCTCTCAAATCCGGCCAGTTCCCCCTCCCTCTTCCTCCCGCTCCGCCCCGCCCCACCAGCACCACCAACCCCACTACTACCACCGCGGCAACCACAACGCCACGTCGTTTCGGTTCAATCCGCGGGACGCGGAGGACATTTACGCCGAGATTTTTGGATCGGAGGGCGGCGGCGGAGGGAGCGGAGGAGGAGCTGGAGGGAGTGGCGGCGGAGGGAGGGCGTATAGGGACGGGTTCTTCAGGACGTCGAATGGGGCCGGTGGGCCGGAGTTGGCCGGGACCAAAATGGCTGATAAGGAAGGGTGCCCCAAGTGCTTATCTTAAGGTGTTCTGTCATTTCAGTTTGGGACATTTGAATGATGATAAGGTCCTTAAGGTTCGGACTCTGGAGGAGATATTAACCATTGAGATCAAACCTGGTTGGAAGAAAGGCACCAAGATAACCTTCCCTGAGAAGGGTAATCAAGAGCCTGGTGTTATTCCAGCAGATCTGATTTTTGTAGTTGATGAAAAACCTCATGCACTTTATAAGAGGGACGGTAATGATCTGGTGGTGAACCAGGAGATCACACTGCTGGAGGCACTCACTGGGAAGAATCTTGAACTAACTACCCTGGATGGAAGGAATCTTATGATCCCGTTGACCGATATCATCAAACCTGGGGCTGAAATGGTTATACCAAATGAAGGAATGCCAATCTCAAAAGAACCGGGGAGAAAGGGAAATTTGAGAATCAAGTTTGATGTCAAGTATCCTTCAAGACTTACTACAGAACAGAAATCAGATTTGAAAAGAGTTTTGGGAGGAGTTTCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

345

Amino Acids

38.31

Weight (kDa)

9.55

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 68	2.2e-26	DnaJ domain
DnaJ_C	PF01556	180 - 325	3.4e-34	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47940
fragaria_vesca	FvH4_5g15710
malus_domestica	MD06G1186100.v1.1 MD07G1162200.v1.1 MD07G1162300.v1.1 MD14G1192300.v1.1
prunus_persica	Prupe.5G184900_v2.0.a1
pyrus_communis	pycom06g16550 pycom14g16000
rosa_chinensis	RchiOBHm_Chr7g0180401
rosa_laevigata	RLG00000005270
rosa_multiflora	Rmu_sc0018872.1_g000002 Rmu_sc0042636.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272920
rosa_rugosa	Rorug06G0432800
rosa_samantha	Rh7AG033400 Rh7BG033300 Rh7CG035300 Rh7DG033800
rosa_wichuraiana	Rw7G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	747
AatII	GACGTC	2 cut(s)	171, 466
AccB1I	GGYRCC	3 cut(s)	93, 521, 650
AccBSI	CCGCTC	2 cut(s)	260, 401
AccII	CGCG	4 cut(s)	44, 305, 342, 349
AclWI	GGATC	2 cut(s)	384, 847
AcoI	YGGCCR	3 cut(s)	111, 232, 491
AcsI	RAATTY	1 cut(s)	943
AcuI	CTGAAG	2 cut(s)	47, 441
AcyI	GRCGYC	2 cut(s)	168, 463
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	3 cut(s)	673, 674, 905
AflII	CTTAAG	2 cut(s)	539, 590
AgsI	TTSAA	7 cut(s)	61, 145, 336, 574, 821, 978, 1009
AjiI	CACGTC	1 cut(s)	323
AjnI	CCWGG	5 cut(s)	634, 688, 777, 831, 877
AjuI	GAANNNNNNNTTGG	4 cut(s)	647, 679, 1001, 1033
AluBI	AGCT	1 cut(s)	412
AluI	AGCT	1 cut(s)	412
AlwI	GGATC	2 cut(s)	384, 847
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	7 cut(s)	111, 129, 159, 232, 473, 481, 491
ApoI	RAATTY	1 cut(s)	943
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	4 cut(s)	473, 481, 497, 586
AsuC2I	CCSGG	4 cut(s)	98, 110, 495, 930
AsuHPI	GGTGA	2 cut(s)	43, 784
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	2 cut(s)	497, 586
BaeGI	GKGCMC	1 cut(s)	526
BanI	GGYRCC	3 cut(s)	93, 521, 650
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbsI	GAAGAC	1 cut(s)	60
BccI	CCATC	1 cut(s)	830
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	5 cut(s)	636, 690, 779, 833, 879
BciVI	GTATCC	1 cut(s)	981
BcnI	CCSGG	4 cut(s)	98, 110, 495, 930
BfmI	CTRYAG	1 cut(s)	987
BfoI	RGCGCY	1 cut(s)	193
BfrI	CTTAAG	2 cut(s)	539, 590
BfuI	GTATCC	1 cut(s)	981
BglII	AGATCT	2 cut(s)	195, 706
BisI	GCNGC	5 cut(s)	77, 306, 387, 390, 426
BlsI	GCNGC	5 cut(s)	78, 307, 388, 391, 427
Bme1390I	CCNGG	9 cut(s)	98, 110, 495, 636, 690, 779, 833, 879, 930
Bme18I	GGWCC	2 cut(s)	497, 586
BmeT110I	CYCGRG	1 cut(s)	125
BmgBI	CACGTC	1 cut(s)	323
BmgT120I	GGNCC	4 cut(s)	473, 481, 497, 586
BmiI	GGNNCC	5 cut(s)	95, 474, 498, 523, 652
BmrFI	CCNGG	9 cut(s)	98, 110, 495, 636, 690, 779, 833, 879, 930
BmrI	ACTGGG	1 cut(s)	816
BmuI	ACTGGG	1 cut(s)	816
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	3 cut(s)	434, 626, 815
BpuMI	CCSGG	4 cut(s)	98, 110, 495, 930
BsaHI	GRCGYC	2 cut(s)	168, 463
BsaJI	CCNNGG	7 cut(s)	126, 156, 303, 340, 831, 878, 929
BsaWI	WCCGGW	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	3 cut(s)	673, 674, 905
Bse118I	RCCGGY	1 cut(s)	475
Bse1I	ACTGG	2 cut(s)	235, 811
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	5 cut(s)	636, 690, 779, 833, 879
BseDI	CCNNGG	7 cut(s)	126, 156, 303, 340, 831, 878, 929
BseGI	GGATG	1 cut(s)	841
BseLI	CCNNNNNNNGG	3 cut(s)	673, 674, 905
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	660
BseNI	ACTGG	2 cut(s)	235, 811
BseRI	GAGGAG	5 cut(s)	230, 419, 422, 623, 1038
BseSI	GKGCMC	1 cut(s)	526
BseX3I	CGGCCG	1 cut(s)	111
Bsh1236I	CGCG	4 cut(s)	44, 305, 342, 349
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	7 cut(s)	113, 131, 161, 234, 475, 483, 493
BshNI	GGYRCC	3 cut(s)	93, 521, 650
BsiEI	CGRYCG	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	9 cut(s)	37, 98, 110, 114, 231, 476, 484, 494, 929
BslFI	GGGAC	5 cut(s)	358, 460, 510, 579, 767
BslI	CCNNNNNNNGG	3 cut(s)	673, 674, 905
BsmFI	GGGAC	5 cut(s)	358, 460, 510, 579, 767
BsmI	GAATGC	1 cut(s)	915
BsnI	GGCC	7 cut(s)	113, 131, 161, 234, 475, 483, 493
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	526
Bsp143I	GATC	8 cut(s)	195, 202, 376, 627, 706, 763, 783, 852
BspANI	GGCC	7 cut(s)	113, 131, 161, 234, 475, 483, 493
BspCNI	CTCAG	1 cut(s)	661
BspFNI	CGCG	4 cut(s)	44, 305, 342, 349
BspLI	GGNNCC	5 cut(s)	95, 474, 498, 523, 652
BspPI	GGATC	2 cut(s)	384, 847
BspT107I	GGYRCC	3 cut(s)	93, 521, 650
BspTI	CTTAAG	2 cut(s)	539, 590
BsrBI	CCGCTC	2 cut(s)	260, 401
BsrDI	GCAATG	1 cut(s)	90
BsrFI	RCCGGY	1 cut(s)	475
BsrI	ACTGG	2 cut(s)	235, 811
BssAI	RCCGGY	1 cut(s)	475
BssECI	CCNNGG	7 cut(s)	126, 156, 303, 340, 831, 878, 929
BssMI	GATC	8 cut(s)	195, 202, 376, 627, 706, 763, 783, 852
BssNI	GRCGYC	2 cut(s)	168, 463
Bst2UI	CCWGG	5 cut(s)	636, 690, 779, 833, 879
Bst4CI	ACNGT	1 cut(s)	758
Bst6I	CTCTTC	1 cut(s)	255
BstACI	GRCGYC	2 cut(s)	168, 463
BstAFI	CTTAAG	2 cut(s)	539, 590
BstC8I	GCNNGC	2 cut(s)	46, 81
BstDEI	CTNAG	1 cut(s)	669
BstDSI	CCRYGG	2 cut(s)	303, 340
BstF5I	GGATG	1 cut(s)	841
BstFNI	CGCG	4 cut(s)	44, 305, 342, 349
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	8 cut(s)	198, 205, 379, 630, 709, 766, 786, 855
BstMBI	GATC	8 cut(s)	195, 202, 376, 627, 706, 763, 783, 852
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	3 cut(s)	276, 398, 530
BstNI	CCWGG	5 cut(s)	636, 690, 779, 833, 879
BstSCI	CCNGG	9 cut(s)	96, 108, 493, 634, 688, 777, 831, 877, 928
BstSFI	CTRYAG	1 cut(s)	987
BstSLI	GKGCMC	1 cut(s)	526
BstUI	CGCG	4 cut(s)	44, 305, 342, 349
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	2 cut(s)	195, 706
BstYI	RGATCY	2 cut(s)	195, 706
BstZI	CGGCCG	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	981
BsuRI	GGCC	7 cut(s)	113, 131, 161, 234, 475, 483, 493
BtgI	CCRYGG	2 cut(s)	303, 340
BtrI	CACGTC	1 cut(s)	323
BtsCI	GGATG	1 cut(s)	841
BtsI	GCAGTG	1 cut(s)	788
BtsIMutI	CAGTG	2 cut(s)	788, 804
Cac8I	GCNNGC	2 cut(s)	46, 81
CfoI	GCGC	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	475
Cfr13I	GGNCC	4 cut(s)	473, 481, 497, 586
Cfr42I	CCGCGG	2 cut(s)	306, 343
CseI	GACGC	1 cut(s)	355
CsiI	ACCWGGT	1 cut(s)	634
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	1 cut(s)	737
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	1 cut(s)	669
DpnI	GATC	8 cut(s)	197, 204, 378, 629, 708, 765, 785, 854
DpnII	GATC	8 cut(s)	195, 202, 376, 627, 706, 763, 783, 852
EaeI	YGGCCR	3 cut(s)	111, 232, 491
EagI	CGGCCG	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
EciI	GGCGGA	3 cut(s)	252, 407, 443
EclXI	CGGCCG	1 cut(s)	111
Eco147I	AGGCCT	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	868
Eco47I	GGWCC	2 cut(s)	497, 586
Eco52I	CGGCCG	1 cut(s)	111
Eco57I	CTGAAG	2 cut(s)	47, 441
Eco88I	CYCGRG	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	586
EcoRII	CCWGG	5 cut(s)	634, 688, 777, 831, 877
EcoRV	GATATC	1 cut(s)	868
FaeI	CATG	1 cut(s)	740
FaiI	YATR	7 cut(s)	23, 443, 738, 747, 851, 896, 1036
FalI	AAGNNNNNCTT	2 cut(s)	647, 679
FaqI	GGGAC	5 cut(s)	358, 460, 510, 579, 767
FatI	CATG	1 cut(s)	736
FauI	CCCGC	3 cut(s)	265, 275, 335
Fnu4HI	GCNGC	5 cut(s)	77, 306, 387, 390, 426
FokI	GGATG	1 cut(s)	848
Fsp4HI	GCNGC	5 cut(s)	77, 306, 387, 390, 426
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	5 cut(s)	77, 306, 387, 390, 426
GsuI	CTGGAG	3 cut(s)	434, 626, 815
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	7 cut(s)	113, 131, 161, 234, 475, 483, 493
HapII	CCGG	9 cut(s)	37, 98, 110, 114, 231, 476, 484, 494, 929
HgaI	GACGC	1 cut(s)	355
HhaI	GCGC	1 cut(s)	192
Hin1I	GRCGYC	2 cut(s)	168, 463
Hin1II	CATG	1 cut(s)	740
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HincII	GTYRAC	1 cut(s)	861
HindII	GTYRAC	1 cut(s)	861
HinfI	GANTC	5 cut(s)	134, 601, 814, 844, 951
HpaII	CCGG	9 cut(s)	37, 98, 110, 114, 231, 476, 484, 494, 929
HphI	GGTGA	2 cut(s)	43, 784
Hpy166II	GTNNAC	3 cut(s)	34, 775, 861
Hpy188I	TCNGA	6 cut(s)	157, 178, 381, 600, 711, 1003
Hpy188III	TCNNGA	5 cut(s)	459, 605, 683, 818, 978
Hpy8I	GTNNAC	3 cut(s)	34, 775, 861
Hpy99I	CGWCG	3 cut(s)	170, 327, 468
HpyAV	CCTTC	8 cut(s)	22, 58, 511, 667, 673, 834, 899, 984
HpyCH4III	ACNGT	1 cut(s)	758
HpyCH4IV	ACGT	3 cut(s)	168, 322, 463
HpyCH4V	TGCA	1 cut(s)	740
HpyF10VI	GCNNNNNNNGC	3 cut(s)	276, 398, 530
HpyF3I	CTNAG	1 cut(s)	669
HpySE526I	ACGT	3 cut(s)	168, 322, 463
Hsp92I	GRCGYC	2 cut(s)	168, 463
Hsp92II	CATG	1 cut(s)	740
HspAI	GCGC	1 cut(s)	190
KspI	CCGCGG	2 cut(s)	306, 343
Kzo9I	GATC	8 cut(s)	195, 202, 376, 627, 706, 763, 783, 852
LmnI	GCTCC	3 cut(s)	265, 398, 409
MabI	ACCWGGT	1 cut(s)	634
MaeII	ACGT	3 cut(s)	168, 322, 463
MalI	GATC	8 cut(s)	197, 204, 378, 629, 708, 765, 785, 854
MbiI	CCGCTC	2 cut(s)	260, 401
MboI	GATC	8 cut(s)	195, 202, 376, 627, 706, 763, 783, 852
MboII	GAAGA	6 cut(s)	65, 73, 242, 447, 655, 823
MflI	RGATCY	2 cut(s)	195, 706
MhlI	GDGCHC	1 cut(s)	526
MluCI	AATT	1 cut(s)	943
MlyI	GAGTC	2 cut(s)	143, 595
MmeI	TCCRAC	2 cut(s)	201, 620
MseI	TTAA	3 cut(s)	540, 591, 617
MslI	CAYNNNNRTG	1 cut(s)	573
MspA1I	CMGCKG	2 cut(s)	305, 342
MspCI	CTTAAG	2 cut(s)	539, 590
MspI	CCGG	9 cut(s)	37, 98, 110, 114, 231, 476, 484, 494, 929
MspR9I	CCNGG	9 cut(s)	98, 110, 495, 636, 690, 779, 833, 879, 930
Mva1269I	GAATGC	1 cut(s)	915
MvaI	CCWGG	5 cut(s)	636, 690, 779, 833, 879
MvnI	CGCG	4 cut(s)	44, 305, 342, 349
MwoI	GCNNNNNNNGC	3 cut(s)	276, 398, 530
NciI	CCSGG	4 cut(s)	98, 110, 495, 930
NdeII	GATC	8 cut(s)	195, 202, 376, 627, 706, 763, 783, 852
NlaIII	CATG	1 cut(s)	740
NlaIV	GGNNCC	5 cut(s)	95, 474, 498, 523, 652
NmeAIII	GCCGAG	2 cut(s)	157, 390
PceI	AGGCCT	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PctI	GAATGC	1 cut(s)	915
PfeI	GAWTC	3 cut(s)	814, 844, 951
PkrI	GCNGC	5 cut(s)	78, 307, 388, 391, 427
PleI	GAGTC	2 cut(s)	142, 595
PpsI	GAGTC	2 cut(s)	142, 595
PpuMI	RGGWCCY	1 cut(s)	586
PsiI	TTATAA	1 cut(s)	747
Psp5II	RGGWCCY	1 cut(s)	586
Psp6I	CCWGG	5 cut(s)	634, 688, 777, 831, 877
PspGI	CCWGG	5 cut(s)	634, 688, 777, 831, 877
PspN4I	GGNNCC	5 cut(s)	95, 474, 498, 523, 652
PspPI	GGNCC	4 cut(s)	473, 481, 497, 586
PspPPI	RGGWCCY	1 cut(s)	586
PsuI	RGATCY	2 cut(s)	195, 706
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	573
SacII	CCGCGG	2 cut(s)	306, 343
SaqAI	TTAA	3 cut(s)	540, 591, 617
SatI	GCNGC	5 cut(s)	77, 306, 387, 390, 426
Sau3AI	GATC	8 cut(s)	195, 202, 376, 627, 706, 763, 783, 852
Sau96I	GGNCC	4 cut(s)	473, 481, 497, 586
SchI	GAGTC	2 cut(s)	143, 595
ScrFI	CCNGG	9 cut(s)	98, 110, 495, 636, 690, 779, 833, 879, 930
SduI	GDGCHC	1 cut(s)	526
SexAI	ACCWGGT	1 cut(s)	634
SfcI	CTRYAG	1 cut(s)	987
Sfr303I	CCGCGG	2 cut(s)	306, 343
SgrBI	CCGCGG	2 cut(s)	306, 343
SinI	GGWCC	2 cut(s)	497, 586
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	2 cut(s)	539, 590
SmoI	CTYRAG	2 cut(s)	539, 590
Sse9I	AATT	1 cut(s)	943
SseBI	AGGCCT	1 cut(s)	161
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	9 cut(s)	96, 108, 493, 634, 688, 777, 831, 877, 928
TaaI	ACNGT	1 cut(s)	758
TaiI	ACGT	3 cut(s)	171, 325, 466
TaqI	TCGA	2 cut(s)	9, 466
TaqII	GACCGA	1 cut(s)	878
TasI	AATT	1 cut(s)	943
TauI	GCSGC	5 cut(s)	79, 308, 389, 392, 428
TfiI	GAWTC	3 cut(s)	814, 844, 951
Tru1I	TTAA	3 cut(s)	540, 591, 617
Tru9I	TTAA	3 cut(s)	540, 591, 617
TscAI	CASTG	2 cut(s)	795, 811
TspDTI	ATGAA	3 cut(s)	741, 918, 1020
TspRI	CASTG	2 cut(s)	795, 811
Vha464I	CTTAAG	2 cut(s)	539, 590
VpaK11BI	GGWCC	2 cut(s)	497, 586
XapI	RAATTY	1 cut(s)	943
ZraI	GACGTC	2 cut(s)	169, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.