Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010652

Physical Location & Seq

Genomic Coordinates Forward (+)

2204262 .. 2208040

Gene Structure 3779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG033300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGGGGTCGATTACTACAACATACTGAAGGTGAACCGGAACGCGAGCGAGGACGACTTGAAGAAGGCGTACAAGCGGCTGGCGATGATTTGGCACCCGGACAAAAACCCGGCCGGAAAACGACCCGAGGCCGAGTCCAAGTTCAAGCAAATCTCCGAGGCCTACGACGTCCTCTCCGACCCCACCAAGCGCCAGATCTACGATCTCTACGGCGAGGAGGCTCTCAAATCCGGCCAGTTCCCCCCTCCCTCTTCCTCCCGCTCCGCCGCGCCCCACTACTACCACCGCGGCAACCACAACGCCACGTCGTTTCGGTTCAATCCGCGGGACGCGGAGGACATTTACGCCGAGATTTTTGGATCGGAGGGCGGCGGCGGCGGCGGAGCTGGAGGGAGTGGCGGCGGAGGGAGGGCGTATAGGGACGGGTTCTTCAGGACGTCGAATGGGGCCGGTGGGCCGGAGTTCGCCGGGACCAGTAGTGGGCCTGGGCCGGGACTGAGGAAGGCCAATGCCCTGGAGAATAACCTGGCTTGCAGCTTGGAGGAGCTCTATAAGGGATTCAAGAAGAAGATGAAGATTTCGAGAAGCATTTTCGATTCGGCTGGTAAGGTCCGGACTCTGGAGGAGATATTAACCATTGAGATCAAACCTGGTTGGAAGAAAGGCACCAAGATAACCTTCCCTGAGAAGGGTAATCAAGAGCCTGGTGTTATTCCAGCAGATCTGATTTTTGTAGTTGATGAAAAACCTCATGCACTTTATAAGAGGGACGGTAATGATCTGGTGGTGAACCAGGAGATCACACTGCTGGAGGCACTCACTGGGAAGAGTCTTGAACTAACTACCCTGGATGGAAGGAATCTTATGATCCCGTTGACCGATATCATCAAACCTGGGGCTGAAATGGTTGTACCAAATGAAGGAATGCCAATCTCAAAAGAACCGGGGAGAAAGGGAAATTTGAGAATCAAGTTTGACGTCAAGTATCCTTCAAGACTTACTACAGAACAGAAATCAGATTTGAAAAGAGTTTTGGGAGGAGTTTCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

350

Amino Acids

38.3

Weight (kDa)

9.14

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 68	2.4e-26	DnaJ domain
DnaJ_C	PF01556	173 - 330	4.7e-40	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47940
fragaria_vesca	FvH4_5g15710
malus_domestica	MD06G1186100.v1.1 MD07G1162200.v1.1 MD07G1162300.v1.1 MD14G1192300.v1.1
prunus_persica	Prupe.5G184900_v2.0.a1
pyrus_communis	pycom06g16550 pycom14g16000
rosa_chinensis	RchiOBHm_Chr7g0180401
rosa_laevigata	RLG00000005270
rosa_multiflora	Rmu_sc0018872.1_g000002 Rmu_sc0042636.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272920
rosa_rugosa	Rorug06G0432800
rosa_samantha	Rh7AG033400 Rh7BG033300 Rh7CG035300 Rh7DG033800
rosa_wichuraiana	Rw7G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	762
AatII	GACGTC	3 cut(s)	171, 440, 981
AccB1I	GGYRCC	2 cut(s)	93, 665
AccBSI	CCGCTC	1 cut(s)	261
AccII	CGCG	5 cut(s)	44, 269, 288, 325, 332
AccIII	TCCGGA	1 cut(s)	612
AclWI	GGATC	2 cut(s)	367, 862
AcoI	YGGCCR	2 cut(s)	111, 232
AcsI	RAATTY	1 cut(s)	958
AcuI	CTGAAG	2 cut(s)	47, 415
AcyI	GRCGYC	3 cut(s)	168, 437, 978
AfaI	GTAC	2 cut(s)	71, 912
AfiI	CCNNNNNNNGG	6 cut(s)	480, 491, 619, 688, 689, 920
AgsI	TTSAA	7 cut(s)	61, 145, 319, 562, 836, 993, 1024
AjiI	CACGTC	1 cut(s)	306
AjnI	CCWGG	8 cut(s)	484, 513, 525, 649, 703, 792, 846, 892
AjuI	GAANNNNNNNTTGG	4 cut(s)	662, 694, 1016, 1048
AluBI	AGCT	3 cut(s)	386, 537, 547
AluI	AGCT	3 cut(s)	386, 537, 547
Alw21I	GWGCWC	1 cut(s)	549
AlwI	GGATC	2 cut(s)	367, 862
Ama87I	CYCGRG	1 cut(s)	125
Aor13HI	TCCGGA	1 cut(s)	612
AoxI	GGCC	9 cut(s)	111, 129, 159, 232, 447, 455, 482, 488, 504
ApeKI	GCWGC	1 cut(s)	534
ApoI	RAATTY	1 cut(s)	958
AspLEI	GCGC	2 cut(s)	192, 271
AspS9I	GGNCC	6 cut(s)	447, 455, 471, 482, 488, 610
AsuC2I	CCSGG	5 cut(s)	98, 110, 469, 492, 945
AsuHPI	GGTGA	2 cut(s)	43, 799
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	2 cut(s)	471, 610
BanI	GGYRCC	2 cut(s)	93, 665
BanII	GRGCYC	1 cut(s)	549
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	1 cut(s)	546
BccI	CCATC	1 cut(s)	845
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	8 cut(s)	486, 515, 527, 651, 705, 794, 848, 894
BciVI	GTATCC	1 cut(s)	996
BcnI	CCSGG	5 cut(s)	98, 110, 469, 492, 945
BfmI	CTRYAG	1 cut(s)	1002
BfoI	RGCGCY	1 cut(s)	193
BfuI	GTATCC	1 cut(s)	996
BglII	AGATCT	2 cut(s)	195, 721
BisI	GCNGC	9 cut(s)	77, 267, 289, 370, 373, 376, 379, 400, 535
BlsI	GCNGC	9 cut(s)	78, 268, 290, 371, 374, 377, 380, 401, 536
Bme18I	GGWCC	2 cut(s)	471, 610
BmeT110I	CYCGRG	1 cut(s)	125
BmgBI	CACGTC	1 cut(s)	306
BmgT120I	GGNCC	6 cut(s)	447, 455, 471, 482, 488, 610
BmiI	GGNNCC	4 cut(s)	95, 448, 472, 667
BmrI	ACTGGG	1 cut(s)	831
BmuI	ACTGGG	1 cut(s)	831
BpmI	CTGGAG	4 cut(s)	408, 536, 641, 830
BpuMI	CCSGG	5 cut(s)	98, 110, 469, 492, 945
BsaHI	GRCGYC	3 cut(s)	168, 437, 978
BsaJI	CCNNGG	9 cut(s)	126, 156, 286, 323, 485, 513, 846, 893, 944
BsaWI	WCCGGW	2 cut(s)	36, 612
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	6 cut(s)	480, 491, 619, 688, 689, 920
Bse118I	RCCGGY	1 cut(s)	449
Bse1I	ACTGG	3 cut(s)	235, 474, 826
BseAI	TCCGGA	1 cut(s)	612
BseBI	CCWGG	8 cut(s)	486, 515, 527, 651, 705, 794, 848, 894
BseDI	CCNNGG	9 cut(s)	126, 156, 286, 323, 485, 513, 846, 893, 944
BseGI	GGATG	1 cut(s)	856
BseLI	CCNNNNNNNGG	6 cut(s)	480, 491, 619, 688, 689, 920
BseMII	CTCAG	2 cut(s)	488, 675
BseNI	ACTGG	3 cut(s)	235, 474, 826
BseRI	GAGGAG	4 cut(s)	230, 557, 638, 1053
BseX3I	CGGCCG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	546
Bsh1236I	CGCG	5 cut(s)	44, 269, 288, 325, 332
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	9 cut(s)	113, 131, 161, 234, 449, 457, 484, 490, 506
BshNI	GGYRCC	2 cut(s)	93, 665
BsiEI	CGRYCG	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	125
BslFI	GGGAC	5 cut(s)	341, 434, 484, 507, 782
BslI	CCNNNNNNNGG	6 cut(s)	480, 491, 619, 688, 689, 920
BsmFI	GGGAC	5 cut(s)	341, 434, 484, 507, 782
BsmI	GAATGC	1 cut(s)	930
BsnI	GGCC	9 cut(s)	113, 131, 161, 234, 449, 457, 484, 490, 506
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp13I	TCCGGA	1 cut(s)	612
Bsp143I	GATC	8 cut(s)	195, 202, 359, 642, 721, 778, 798, 867
BspANI	GGCC	9 cut(s)	113, 131, 161, 234, 449, 457, 484, 490, 506
BspCNI	CTCAG	2 cut(s)	489, 676
BspEI	TCCGGA	1 cut(s)	612
BspFNI	CGCG	5 cut(s)	44, 269, 288, 325, 332
BspLI	GGNNCC	4 cut(s)	95, 448, 472, 667
BspPI	GGATC	2 cut(s)	367, 862
BspT107I	GGYRCC	2 cut(s)	93, 665
BsrBI	CCGCTC	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	449
BsrI	ACTGG	3 cut(s)	235, 474, 826
BssAI	RCCGGY	1 cut(s)	449
BssECI	CCNNGG	9 cut(s)	126, 156, 286, 323, 485, 513, 846, 893, 944
BssMI	GATC	8 cut(s)	195, 202, 359, 642, 721, 778, 798, 867
BssNI	GRCGYC	3 cut(s)	168, 437, 978
Bst2UI	CCWGG	8 cut(s)	486, 515, 527, 651, 705, 794, 848, 894
Bst4CI	ACNGT	1 cut(s)	773
Bst6I	CTCTTC	2 cut(s)	256, 821
BstACI	GRCGYC	3 cut(s)	168, 437, 978
BstC8I	GCNNGC	3 cut(s)	46, 81, 532
BstDEI	CTNAG	2 cut(s)	497, 684
BstDSI	CCRYGG	2 cut(s)	286, 323
BstF5I	GGATG	1 cut(s)	856
BstFNI	CGCG	5 cut(s)	44, 269, 288, 325, 332
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	2 cut(s)	192, 271
BstKTI	GATC	8 cut(s)	198, 205, 362, 645, 724, 781, 801, 870
BstMBI	GATC	8 cut(s)	195, 202, 359, 642, 721, 778, 798, 867
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	2 cut(s)	375, 378
BstNI	CCWGG	8 cut(s)	486, 515, 527, 651, 705, 794, 848, 894
BstSFI	CTRYAG	1 cut(s)	1002
BstUI	CGCG	5 cut(s)	44, 269, 288, 325, 332
BstV1I	GCAGC	1 cut(s)	546
BstX2I	RGATCY	2 cut(s)	195, 721
BstXI	CCANNNNNNTGG	1 cut(s)	514
BstYI	RGATCY	2 cut(s)	195, 721
BstZI	CGGCCG	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	996
BsuRI	GGCC	9 cut(s)	113, 131, 161, 234, 449, 457, 484, 490, 506
BtgI	CCRYGG	2 cut(s)	286, 323
BtgZI	GCGATG	1 cut(s)	98
BtrI	CACGTC	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	856
BtsI	GCAGTG	1 cut(s)	803
BtsIMutI	CAGTG	2 cut(s)	803, 819
Cac8I	GCNNGC	3 cut(s)	46, 81, 532
CfoI	GCGC	2 cut(s)	192, 271
Cfr10I	RCCGGY	1 cut(s)	449
Cfr13I	GGNCC	6 cut(s)	447, 455, 471, 482, 488, 610
Cfr42I	CCGCGG	2 cut(s)	289, 326
CseI	GACGC	1 cut(s)	338
CsiI	ACCWGGT	1 cut(s)	649
Csp6I	GTAC	2 cut(s)	70, 911
CviAII	CATG	1 cut(s)	752
CviQI	GTAC	2 cut(s)	70, 911
DdeI	CTNAG	2 cut(s)	497, 684
DpnI	GATC	8 cut(s)	197, 204, 361, 644, 723, 780, 800, 869
DpnII	GATC	8 cut(s)	195, 202, 359, 642, 721, 778, 798, 867
EaeI	YGGCCR	2 cut(s)	111, 232
EagI	CGGCCG	1 cut(s)	111
Eam1104I	CTCTTC	2 cut(s)	256, 821
EarI	CTCTTC	2 cut(s)	256, 821
EciI	GGCGGA	3 cut(s)	253, 396, 417
Ecl136II	GAGCTC	1 cut(s)	547
EclXI	CGGCCG	1 cut(s)	111
Eco147I	AGGCCT	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	549
Eco32I	GATATC	1 cut(s)	883
Eco47I	GGWCC	2 cut(s)	471, 610
Eco52I	CGGCCG	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	547
Eco57I	CTGAAG	2 cut(s)	47, 415
Eco88I	CYCGRG	1 cut(s)	125
EcoICRI	GAGCTC	1 cut(s)	547
EcoRII	CCWGG	8 cut(s)	484, 513, 525, 649, 703, 792, 846, 892
EcoRV	GATATC	1 cut(s)	883
EcoT38I	GRGCYC	1 cut(s)	549
FaeI	CATG	1 cut(s)	755
FaiI	YATR	7 cut(s)	23, 417, 552, 753, 762, 866, 1051
FalI	AAGNNNNNCTT	2 cut(s)	662, 694
FaqI	GGGAC	5 cut(s)	341, 434, 484, 507, 782
FatI	CATG	1 cut(s)	751
FauI	CCCGC	2 cut(s)	266, 318
Fnu4HI	GCNGC	9 cut(s)	77, 267, 289, 370, 373, 376, 379, 400, 535
FokI	GGATG	1 cut(s)	863
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	9 cut(s)	77, 267, 289, 370, 373, 376, 379, 400, 535
GlaI	GCGC	2 cut(s)	191, 270
GluI	GCNGC	9 cut(s)	77, 267, 289, 370, 373, 376, 379, 400, 535
GsuI	CTGGAG	4 cut(s)	408, 536, 641, 830
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	9 cut(s)	113, 131, 161, 234, 449, 457, 484, 490, 506
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	2 cut(s)	192, 271
Hin1I	GRCGYC	3 cut(s)	168, 437, 978
Hin1II	CATG	1 cut(s)	755
Hin6I	GCGC	2 cut(s)	190, 269
HinP1I	GCGC	2 cut(s)	190, 269
HincII	GTYRAC	1 cut(s)	876
HindII	GTYRAC	1 cut(s)	876
HinfI	GANTC	7 cut(s)	134, 558, 596, 616, 829, 859, 966
HphI	GGTGA	2 cut(s)	43, 799
Hpy166II	GTNNAC	3 cut(s)	34, 790, 876
Hpy188I	TCNGA	5 cut(s)	157, 178, 364, 726, 1018
Hpy188III	TCNNGA	8 cut(s)	433, 562, 582, 613, 620, 698, 833, 993
Hpy8I	GTNNAC	3 cut(s)	34, 790, 876
Hpy99I	CGWCG	3 cut(s)	170, 310, 442
HpyAV	CCTTC	8 cut(s)	22, 58, 496, 682, 688, 849, 914, 999
HpyCH4III	ACNGT	1 cut(s)	773
HpyCH4IV	ACGT	4 cut(s)	168, 305, 437, 978
HpyCH4V	TGCA	2 cut(s)	534, 755
HpyF10VI	GCNNNNNNNGC	2 cut(s)	375, 378
HpyF3I	CTNAG	2 cut(s)	497, 684
HpySE526I	ACGT	4 cut(s)	168, 305, 437, 978
Hsp92I	GRCGYC	3 cut(s)	168, 437, 978
Hsp92II	CATG	1 cut(s)	755
HspAI	GCGC	2 cut(s)	190, 269
Kpn2I	TCCGGA	1 cut(s)	612
KspI	CCGCGG	2 cut(s)	289, 326
Kzo9I	GATC	8 cut(s)	195, 202, 359, 642, 721, 778, 798, 867
LmnI	GCTCC	3 cut(s)	266, 383, 544
Lsp1109I	GCAGC	1 cut(s)	546
MabI	ACCWGGT	1 cut(s)	649
MaeII	ACGT	4 cut(s)	168, 305, 437, 978
MalI	GATC	8 cut(s)	197, 204, 361, 644, 723, 780, 800, 869
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	8 cut(s)	195, 202, 359, 642, 721, 778, 798, 867
MboII	GAAGA	8 cut(s)	73, 243, 421, 577, 580, 586, 670, 838
MflI	RGATCY	2 cut(s)	195, 721
MhlI	GDGCHC	1 cut(s)	549
MluCI	AATT	1 cut(s)	958
MlyI	GAGTC	3 cut(s)	143, 610, 838
MmeI	TCCRAC	2 cut(s)	201, 635
MroI	TCCGGA	1 cut(s)	612
MseI	TTAA	1 cut(s)	632
MspA1I	CMGCKG	2 cut(s)	288, 325
Mva1269I	GAATGC	1 cut(s)	930
MvaI	CCWGG	8 cut(s)	486, 515, 527, 651, 705, 794, 848, 894
MvnI	CGCG	5 cut(s)	44, 269, 288, 325, 332
MwoI	GCNNNNNNNGC	2 cut(s)	375, 378
NciI	CCSGG	5 cut(s)	98, 110, 469, 492, 945
NdeII	GATC	8 cut(s)	195, 202, 359, 642, 721, 778, 798, 867
NlaIII	CATG	1 cut(s)	755
NlaIV	GGNNCC	4 cut(s)	95, 448, 472, 667
NmeAIII	GCCGAG	2 cut(s)	157, 373
PceI	AGGCCT	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PctI	GAATGC	1 cut(s)	930
PfeI	GAWTC	4 cut(s)	558, 596, 859, 966
PkrI	GCNGC	9 cut(s)	78, 268, 290, 371, 374, 377, 380, 401, 536
PleI	GAGTC	3 cut(s)	142, 610, 837
PpsI	GAGTC	3 cut(s)	142, 610, 837
PsiI	TTATAA	1 cut(s)	762
Psp124BI	GAGCTC	1 cut(s)	549
Psp6I	CCWGG	8 cut(s)	484, 513, 525, 649, 703, 792, 846, 892
PspGI	CCWGG	8 cut(s)	484, 513, 525, 649, 703, 792, 846, 892
PspN4I	GGNNCC	4 cut(s)	95, 448, 472, 667
PspPI	GGNCC	6 cut(s)	447, 455, 471, 482, 488, 610
PsuI	RGATCY	2 cut(s)	195, 721
RsaI	GTAC	2 cut(s)	71, 912
RsaNI	GTAC	2 cut(s)	70, 911
SacI	GAGCTC	1 cut(s)	549
SacII	CCGCGG	2 cut(s)	289, 326
SaqAI	TTAA	1 cut(s)	632
SatI	GCNGC	9 cut(s)	77, 267, 289, 370, 373, 376, 379, 400, 535
Sau3AI	GATC	8 cut(s)	195, 202, 359, 642, 721, 778, 798, 867
Sau96I	GGNCC	6 cut(s)	447, 455, 471, 482, 488, 610
SchI	GAGTC	3 cut(s)	143, 610, 838
SduI	GDGCHC	1 cut(s)	549
SexAI	ACCWGGT	1 cut(s)	649
SfcI	CTRYAG	1 cut(s)	1002
Sfr303I	CCGCGG	2 cut(s)	289, 326
SgrBI	CCGCGG	2 cut(s)	289, 326
SinI	GGWCC	2 cut(s)	471, 610
Sse9I	AATT	1 cut(s)	958
SseBI	AGGCCT	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	549
StuI	AGGCCT	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	773
TaiI	ACGT	4 cut(s)	171, 308, 440, 981
TaqI	TCGA	4 cut(s)	9, 440, 581, 594
TaqII	GACCGA	1 cut(s)	893
TasI	AATT	1 cut(s)	958
TauI	GCSGC	8 cut(s)	79, 269, 291, 372, 375, 378, 381, 402
TfiI	GAWTC	4 cut(s)	558, 596, 859, 966
Tru1I	TTAA	1 cut(s)	632
Tru9I	TTAA	1 cut(s)	632
TscAI	CASTG	2 cut(s)	810, 826
TseI	GCWGC	1 cut(s)	534
TspDTI	ATGAA	4 cut(s)	587, 756, 933, 1035
TspRI	CASTG	2 cut(s)	810, 826
VpaK11BI	GGWCC	2 cut(s)	471, 610
XapI	RAATTY	1 cut(s)	958
ZraI	GACGTC	3 cut(s)	169, 438, 979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.