Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010652

Physical Location & Seq

Genomic Coordinates Forward (+)

2394508 .. 2398286

Gene Structure 3779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG035300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGGGGTCGATTACTACAACATACTGAAGGTGAACCGGAACGCGAGCGAGGACGACTTGAAGAAGGCGTACAAGCGGCTGGCGATGATTTGGCACCCGGACAAAAACCCGGCCGGAAAACGACCCGAGGCCGAGTCCAAGTTCAAGCAAATCTCAGAGGCCTACGACGTCCTCTCCGACCCCACCAAGCGCCAGATCTACGATCTCTACGGCGAGGAGGCTCTCAAATCCGGCCAGTTCCCCCCTCCCTCTTCCTCCCGCTCCGCCGCGCCCCACCAGCACCACCAACCCCACTACTACCACCGCGGCAACCACAACGCCACGTCGTTTCGGTTCAATCCGCGGGACGCGGAGGACATTTACGCCGAGATTTTTGGATCGGAGGGCGGCGGCGGCGGAGGAGCTGGAGGGAGTGGCGGCGGAGGGAGGGCGTATAGGGACGGGTTCTTCAGGACGTCGAATGGGGCCGGTGGGCCGGAGTTCGCAGGGACCAGTAGTGGGCCTGGGCCGGGACTGAGGAAGGCCAATGCCCTGGAGAATAACCTGGCTTGCAGCTTGGAGGAGCTGTATAAGGGATTCAAGAAGAAGATGAAGATTTCGAGAAGCATTTTCGATTCGGCTGGTAAGGTTCGGACTCTGGAGGAGATATTAACCATTGAGATCAAACCTGGTTGGAAGAAAGGCACCAAGATAACCTTCCCTGAGAAGGGTAATCAAGAACCTGGTGTTATTCCGGCAGATCTGATTTTTGTAGTTGATGAAAAACCTCATGCACTTTATAAGAGGGACGGTAATGATCTGGTGGTGAACCAGGAGATCACACTGCTGGAGGCACTCACTGGGAAGAATCTTGAACTAACTACCCTGGATGGAAGGAATCTTACGATCCCGTTGACCGATATCATCAAACCTGGGGCTGAAATGGTTGTACCAAATGAAGGAATGCCAATCTCAAAAGAACCGGGGAGAAAGGGAAATTTGAGAATCAGGTTTGACGTCAAGTATCCTTCAAGACTTACAACAGAACAGAAATCAGATTTGAAAAGAGTTTTGGGAGGAGTTTCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

356

Amino Acids

39.09

Weight (kDa)

9.15

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 68	2.5e-26	DnaJ domain
DnaJ_C	PF01556	179 - 336	8.8e-40	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47940
fragaria_vesca	FvH4_5g15710
malus_domestica	MD06G1186100.v1.1 MD07G1162200.v1.1 MD07G1162300.v1.1 MD14G1192300.v1.1
prunus_persica	Prupe.5G184900_v2.0.a1
pyrus_communis	pycom06g16550 pycom14g16000
rosa_chinensis	RchiOBHm_Chr7g0180401
rosa_laevigata	RLG00000005270
rosa_multiflora	Rmu_sc0018872.1_g000002 Rmu_sc0042636.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272920
rosa_rugosa	Rorug06G0432800
rosa_samantha	Rh7AG033400 Rh7BG033300 Rh7CG035300 Rh7DG033800
rosa_wichuraiana	Rw7G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	780
AatII	GACGTC	3 cut(s)	171, 458, 999
AccB1I	GGYRCC	2 cut(s)	93, 683
AccBSI	CCGCTC	1 cut(s)	261
AccII	CGCG	5 cut(s)	44, 269, 306, 343, 350
AclWI	GGATC	2 cut(s)	385, 880
AcoI	YGGCCR	2 cut(s)	111, 232
AcsI	RAATTY	1 cut(s)	976
AcuI	CTGAAG	2 cut(s)	47, 433
AcyI	GRCGYC	3 cut(s)	168, 455, 996
AfaI	GTAC	2 cut(s)	71, 930
AfiI	CCNNNNNNNGG	5 cut(s)	498, 509, 706, 707, 938
AgsI	TTSAA	7 cut(s)	61, 145, 337, 580, 854, 1011, 1042
AjiI	CACGTC	1 cut(s)	324
AjnI	CCWGG	8 cut(s)	502, 531, 543, 667, 721, 810, 864, 910
AjuI	GAANNNNNNNTTGG	4 cut(s)	680, 712, 1034, 1066
AluBI	AGCT	3 cut(s)	404, 555, 565
AluI	AGCT	3 cut(s)	404, 555, 565
AlwI	GGATC	2 cut(s)	385, 880
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	9 cut(s)	111, 129, 159, 232, 465, 473, 500, 506, 522
ApeKI	GCWGC	1 cut(s)	552
ApoI	RAATTY	1 cut(s)	976
AspLEI	GCGC	2 cut(s)	192, 271
AspS9I	GGNCC	5 cut(s)	465, 473, 489, 500, 506
AsuC2I	CCSGG	4 cut(s)	98, 110, 510, 963
AsuHPI	GGTGA	2 cut(s)	43, 817
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	489
BanI	GGYRCC	2 cut(s)	93, 683
BarI	GAAGNNNNNNTAC	4 cut(s)	53, 85, 865, 897
BbvI	GCAGC	1 cut(s)	564
BccI	CCATC	1 cut(s)	863
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	8 cut(s)	504, 533, 545, 669, 723, 812, 866, 912
BciVI	GTATCC	1 cut(s)	1014
BcnI	CCSGG	4 cut(s)	98, 110, 510, 963
BfoI	RGCGCY	1 cut(s)	193
BfuI	GTATCC	1 cut(s)	1014
BglII	AGATCT	2 cut(s)	195, 739
BisI	GCNGC	8 cut(s)	77, 267, 307, 388, 391, 394, 418, 553
BlsI	GCNGC	8 cut(s)	78, 268, 308, 389, 392, 395, 419, 554
Bme18I	GGWCC	1 cut(s)	489
BmeT110I	CYCGRG	1 cut(s)	125
BmgBI	CACGTC	1 cut(s)	324
BmgT120I	GGNCC	5 cut(s)	465, 473, 489, 500, 506
BmiI	GGNNCC	4 cut(s)	95, 466, 490, 685
BmrI	ACTGGG	1 cut(s)	849
BmuI	ACTGGG	1 cut(s)	849
BpmI	CTGGAG	4 cut(s)	426, 554, 659, 848
BpuMI	CCSGG	4 cut(s)	98, 110, 510, 963
BsaHI	GRCGYC	3 cut(s)	168, 455, 996
BsaJI	CCNNGG	8 cut(s)	126, 304, 341, 503, 531, 864, 911, 962
BsaWI	WCCGGW	1 cut(s)	36
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 551, 581
Bsc4I	CCNNNNNNNGG	5 cut(s)	498, 509, 706, 707, 938
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	3 cut(s)	235, 492, 844
BseBI	CCWGG	8 cut(s)	504, 533, 545, 669, 723, 812, 866, 912
BseDI	CCNNGG	8 cut(s)	126, 304, 341, 503, 531, 864, 911, 962
BseGI	GGATG	1 cut(s)	874
BseLI	CCNNNNNNNGG	5 cut(s)	498, 509, 706, 707, 938
BseMII	CTCAG	3 cut(s)	168, 506, 693
BseNI	ACTGG	3 cut(s)	235, 492, 844
BseRI	GAGGAG	5 cut(s)	230, 414, 575, 656, 1071
BseX3I	CGGCCG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	564
Bsh1236I	CGCG	5 cut(s)	44, 269, 306, 343, 350
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	9 cut(s)	113, 131, 161, 234, 467, 475, 502, 508, 524
BshNI	GGYRCC	2 cut(s)	93, 683
BsiEI	CGRYCG	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	125
BslFI	GGGAC	5 cut(s)	359, 452, 502, 525, 800
BslI	CCNNNNNNNGG	5 cut(s)	498, 509, 706, 707, 938
BsmFI	GGGAC	5 cut(s)	359, 452, 502, 525, 800
BsmI	GAATGC	1 cut(s)	948
BsnI	GGCC	9 cut(s)	113, 131, 161, 234, 467, 475, 502, 508, 524
BsoBI	CYCGRG	1 cut(s)	125
Bsp143I	GATC	8 cut(s)	195, 202, 377, 660, 739, 796, 816, 885
BspANI	GGCC	9 cut(s)	113, 131, 161, 234, 467, 475, 502, 508, 524
BspCNI	CTCAG	3 cut(s)	167, 507, 694
BspFNI	CGCG	5 cut(s)	44, 269, 306, 343, 350
BspLI	GGNNCC	4 cut(s)	95, 466, 490, 685
BspPI	GGATC	2 cut(s)	385, 880
BspT107I	GGYRCC	2 cut(s)	93, 683
BsrBI	CCGCTC	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	3 cut(s)	235, 492, 844
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	8 cut(s)	126, 304, 341, 503, 531, 864, 911, 962
BssMI	GATC	8 cut(s)	195, 202, 377, 660, 739, 796, 816, 885
BssNI	GRCGYC	3 cut(s)	168, 455, 996
Bst2UI	CCWGG	8 cut(s)	504, 533, 545, 669, 723, 812, 866, 912
Bst4CI	ACNGT	1 cut(s)	791
Bst6I	CTCTTC	1 cut(s)	256
BstACI	GRCGYC	3 cut(s)	168, 455, 996
BstC8I	GCNNGC	3 cut(s)	46, 81, 550
BstDEI	CTNAG	3 cut(s)	154, 515, 702
BstDSI	CCRYGG	2 cut(s)	304, 341
BstF5I	GGATG	1 cut(s)	874
BstFNI	CGCG	5 cut(s)	44, 269, 306, 343, 350
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	2 cut(s)	192, 271
BstKTI	GATC	8 cut(s)	198, 205, 380, 663, 742, 799, 819, 888
BstMBI	GATC	8 cut(s)	195, 202, 377, 660, 739, 796, 816, 885
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 393
BstNI	CCWGG	8 cut(s)	504, 533, 545, 669, 723, 812, 866, 912
BstUI	CGCG	5 cut(s)	44, 269, 306, 343, 350
BstV1I	GCAGC	1 cut(s)	564
BstX2I	RGATCY	2 cut(s)	195, 739
BstXI	CCANNNNNNTGG	1 cut(s)	532
BstYI	RGATCY	2 cut(s)	195, 739
BstZI	CGGCCG	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	1014
BsuRI	GGCC	9 cut(s)	113, 131, 161, 234, 467, 475, 502, 508, 524
BtgI	CCRYGG	2 cut(s)	304, 341
BtgZI	GCGATG	1 cut(s)	98
BtrI	CACGTC	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	874
BtsI	GCAGTG	1 cut(s)	821
BtsIMutI	CAGTG	2 cut(s)	821, 837
Cac8I	GCNNGC	3 cut(s)	46, 81, 550
CfoI	GCGC	2 cut(s)	192, 271
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	5 cut(s)	465, 473, 489, 500, 506
Cfr42I	CCGCGG	2 cut(s)	307, 344
CseI	GACGC	1 cut(s)	356
CsiI	ACCWGGT	2 cut(s)	667, 721
Csp6I	GTAC	2 cut(s)	70, 929
CviAII	CATG	1 cut(s)	770
CviQI	GTAC	2 cut(s)	70, 929
DdeI	CTNAG	3 cut(s)	154, 515, 702
DpnI	GATC	8 cut(s)	197, 204, 379, 662, 741, 798, 818, 887
DpnII	GATC	8 cut(s)	195, 202, 377, 660, 739, 796, 816, 885
EaeI	YGGCCR	2 cut(s)	111, 232
EagI	CGGCCG	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
EciI	GGCGGA	3 cut(s)	253, 411, 435
EclXI	CGGCCG	1 cut(s)	111
Eco147I	AGGCCT	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	901
Eco47I	GGWCC	1 cut(s)	489
Eco52I	CGGCCG	1 cut(s)	111
Eco57I	CTGAAG	2 cut(s)	47, 433
Eco88I	CYCGRG	1 cut(s)	125
EcoRII	CCWGG	8 cut(s)	502, 531, 543, 667, 721, 810, 864, 910
EcoRV	GATATC	1 cut(s)	901
FaeI	CATG	1 cut(s)	773
FaiI	YATR	6 cut(s)	23, 435, 570, 771, 780, 1069
FalI	AAGNNNNNCTT	2 cut(s)	680, 712
FaqI	GGGAC	5 cut(s)	359, 452, 502, 525, 800
FatI	CATG	1 cut(s)	769
FauI	CCCGC	2 cut(s)	266, 336
Fnu4HI	GCNGC	8 cut(s)	77, 267, 307, 388, 391, 394, 418, 553
FokI	GGATG	1 cut(s)	881
Fsp4HI	GCNGC	8 cut(s)	77, 267, 307, 388, 391, 394, 418, 553
GlaI	GCGC	2 cut(s)	191, 270
GluI	GCNGC	8 cut(s)	77, 267, 307, 388, 391, 394, 418, 553
GsuI	CTGGAG	4 cut(s)	426, 554, 659, 848
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	9 cut(s)	113, 131, 161, 234, 467, 475, 502, 508, 524
HgaI	GACGC	1 cut(s)	356
HhaI	GCGC	2 cut(s)	192, 271
Hin1I	GRCGYC	3 cut(s)	168, 455, 996
Hin1II	CATG	1 cut(s)	773
Hin6I	GCGC	2 cut(s)	190, 269
HinP1I	GCGC	2 cut(s)	190, 269
HincII	GTYRAC	1 cut(s)	894
HindII	GTYRAC	1 cut(s)	894
HinfI	GANTC	7 cut(s)	134, 576, 614, 634, 847, 877, 984
HphI	GGTGA	2 cut(s)	43, 817
Hpy166II	GTNNAC	3 cut(s)	34, 808, 894
Hpy188I	TCNGA	6 cut(s)	157, 178, 382, 633, 744, 1036
Hpy188III	TCNNGA	7 cut(s)	451, 580, 600, 638, 716, 851, 1011
Hpy8I	GTNNAC	3 cut(s)	34, 808, 894
Hpy99I	CGWCG	3 cut(s)	170, 328, 460
HpyAV	CCTTC	8 cut(s)	22, 58, 514, 700, 706, 867, 932, 1017
HpyCH4III	ACNGT	1 cut(s)	791
HpyCH4IV	ACGT	4 cut(s)	168, 323, 455, 996
HpyCH4V	TGCA	2 cut(s)	552, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 393
HpyF3I	CTNAG	3 cut(s)	154, 515, 702
HpySE526I	ACGT	4 cut(s)	168, 323, 455, 996
Hsp92I	GRCGYC	3 cut(s)	168, 455, 996
Hsp92II	CATG	1 cut(s)	773
HspAI	GCGC	2 cut(s)	190, 269
KspI	CCGCGG	2 cut(s)	307, 344
Kzo9I	GATC	8 cut(s)	195, 202, 377, 660, 739, 796, 816, 885
LmnI	GCTCC	3 cut(s)	266, 401, 562
Lsp1109I	GCAGC	1 cut(s)	564
MabI	ACCWGGT	2 cut(s)	667, 721
MaeII	ACGT	4 cut(s)	168, 323, 455, 996
MalI	GATC	8 cut(s)	197, 204, 379, 662, 741, 798, 818, 887
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	8 cut(s)	195, 202, 377, 660, 739, 796, 816, 885
MboII	GAAGA	8 cut(s)	73, 243, 439, 595, 598, 604, 688, 856
MflI	RGATCY	2 cut(s)	195, 739
MluCI	AATT	1 cut(s)	976
MlyI	GAGTC	2 cut(s)	143, 628
MmeI	TCCRAC	2 cut(s)	201, 653
MseI	TTAA	1 cut(s)	650
MspA1I	CMGCKG	2 cut(s)	306, 343
Mva1269I	GAATGC	1 cut(s)	948
MvaI	CCWGG	8 cut(s)	504, 533, 545, 669, 723, 812, 866, 912
MvnI	CGCG	5 cut(s)	44, 269, 306, 343, 350
MwoI	GCNNNNNNNGC	2 cut(s)	277, 393
NciI	CCSGG	4 cut(s)	98, 110, 510, 963
NdeII	GATC	8 cut(s)	195, 202, 377, 660, 739, 796, 816, 885
NlaIII	CATG	1 cut(s)	773
NlaIV	GGNNCC	4 cut(s)	95, 466, 490, 685
NmeAIII	GCCGAG	2 cut(s)	157, 391
PceI	AGGCCT	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PctI	GAATGC	1 cut(s)	948
PfeI	GAWTC	5 cut(s)	576, 614, 847, 877, 984
PkrI	GCNGC	8 cut(s)	78, 268, 308, 389, 392, 395, 419, 554
PleI	GAGTC	2 cut(s)	142, 628
PpsI	GAGTC	2 cut(s)	142, 628
PsiI	TTATAA	1 cut(s)	780
Psp6I	CCWGG	8 cut(s)	502, 531, 543, 667, 721, 810, 864, 910
PspGI	CCWGG	8 cut(s)	502, 531, 543, 667, 721, 810, 864, 910
PspN4I	GGNNCC	4 cut(s)	95, 466, 490, 685
PspPI	GGNCC	5 cut(s)	465, 473, 489, 500, 506
PsuI	RGATCY	2 cut(s)	195, 739
RsaI	GTAC	2 cut(s)	71, 930
RsaNI	GTAC	2 cut(s)	70, 929
SacII	CCGCGG	2 cut(s)	307, 344
SaqAI	TTAA	1 cut(s)	650
SatI	GCNGC	8 cut(s)	77, 267, 307, 388, 391, 394, 418, 553
Sau3AI	GATC	8 cut(s)	195, 202, 377, 660, 739, 796, 816, 885
Sau96I	GGNCC	5 cut(s)	465, 473, 489, 500, 506
SchI	GAGTC	2 cut(s)	143, 628
SexAI	ACCWGGT	2 cut(s)	667, 721
Sfr303I	CCGCGG	2 cut(s)	307, 344
SgrBI	CCGCGG	2 cut(s)	307, 344
SinI	GGWCC	1 cut(s)	489
Sse9I	AATT	1 cut(s)	976
SseBI	AGGCCT	1 cut(s)	161
StuI	AGGCCT	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	791
TaiI	ACGT	4 cut(s)	171, 326, 458, 999
TaqI	TCGA	4 cut(s)	9, 458, 599, 612
TaqII	GACCGA	1 cut(s)	911
TasI	AATT	1 cut(s)	976
TauI	GCSGC	7 cut(s)	79, 269, 309, 390, 393, 396, 420
TfiI	GAWTC	5 cut(s)	576, 614, 847, 877, 984
Tru1I	TTAA	1 cut(s)	650
Tru9I	TTAA	1 cut(s)	650
TscAI	CASTG	2 cut(s)	828, 844
TseI	GCWGC	1 cut(s)	552
TspDTI	ATGAA	4 cut(s)	605, 774, 951, 1053
TspRI	CASTG	2 cut(s)	828, 844
VpaK11BI	GGWCC	1 cut(s)	489
XapI	RAATTY	1 cut(s)	976
ZraI	GACGTC	3 cut(s)	169, 456, 997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.