Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0010652

Physical Location & Seq

Genomic Coordinates Forward (+)

2280183 .. 2283458

Gene Structure 3276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G002790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGGGGTCGATTACTACAACATACTGAAGGTGAACCGGAACGCGAGCGAGGACGACTTGAAGAAGGCGTACAAGCGGCTGGCGATGATTTGGCACCCGGACAAAAACCCGGCCGGAAAACGACCCGAGGCCGAGTCCAAGTTCAAGCAAATCTCCGAGGCCTACGACGTCCTCTCCGACCCCACCAAGCGCCAGATCTACGATCTCTACGGCGAGGAGGCTCTCAAATCCGGCCAGTTCCCCCCTCCCTCTTCCTCCCGCTCCGCCGCGCCCCACCAGCACCACCAACCCCACTACTACCACCGCGGCAACCACAACGCCACGTCGTTTCGGTTCAATCCGCGGGACGCGGAGGACATTTACGCCGAGATTTTTGGATCGGAGGGCGGCGGCGGAGGAGGAGGAGCTGGAGGGAGTGGCGGCGGAGGGAGGGCGTATAGGGACGGGTTCTTCAGGACGTCGAATGGGGCCGGTGGGCCGGAGTTCGCCGGGACCAGTAGTGGGTCTGGGTCGGGACTGAGGAAGGCCAATGCCCTGGAGAATAACCTGGCTTGCAGCTTGGAGGAGCTTTATAAGGGATTCAAGAAGAAGATGAAGATTTCGAGAAGCATTTTCGATTCGGCTGGTAAGGTTCGGACTCTGGAGGAGATATTAACCATTGAGATCAAACCTGGTTGGAAGAAAGGCACCAAGATAACCTTCCCTGAGAAGGGTAATCAAGAGCCTGGTGTTATTCCAGCAGATCTGATTTTTGTAGTTGATGAAAAACCTCATGCACTTTATAAGAGGGACGGTAATGATCTAGTGGTGAACCAGGAGATCACACTGCTGGAGGCACTCACTGGGAAGAATCTTGAACTAACTACCCTGGATGGAAGGAATCTTATCATCCCGTTGACCGATATCATCAAACCTGGGGCTGAAATGGTTGTACCAAATGAAGGAATGCCAATCTCAAAAGAACCGGGGAGAAAGGGAAATTTGAGAATCAGGTTTGACGTCAAGTATCCTTCAAGACTTACTACAGAACAGAAATCAGATTTGAAAAGAGTTTTGGGAGGAGTTTCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

357

Amino Acids

39.13

Weight (kDa)

9.15

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 68	2.5e-26	DnaJ domain
DnaJ_C	PF01556	180 - 337	8.3e-40	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47940
fragaria_vesca	FvH4_5g15710
malus_domestica	MD06G1186100.v1.1 MD07G1162200.v1.1 MD07G1162300.v1.1 MD14G1192300.v1.1
prunus_persica	Prupe.5G184900_v2.0.a1
pyrus_communis	pycom06g16550 pycom14g16000
rosa_chinensis	RchiOBHm_Chr7g0180401
rosa_laevigata	RLG00000005270
rosa_multiflora	Rmu_sc0018872.1_g000002 Rmu_sc0042636.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272920
rosa_rugosa	Rorug06G0432800
rosa_samantha	Rh7AG033400 Rh7BG033300 Rh7CG035300 Rh7DG033800
rosa_wichuraiana	Rw7G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	573, 783
AatII	GACGTC	3 cut(s)	171, 461, 1002
AccB1I	GGYRCC	2 cut(s)	93, 686
AccBSI	CCGCTC	1 cut(s)	261
AccII	CGCG	5 cut(s)	44, 269, 306, 343, 350
AclWI	GGATC	1 cut(s)	385
AcoI	YGGCCR	2 cut(s)	111, 232
AcsI	RAATTY	1 cut(s)	979
AcuI	CTGAAG	2 cut(s)	47, 436
AcyI	GRCGYC	3 cut(s)	168, 458, 999
AfaI	GTAC	2 cut(s)	71, 933
AfiI	CCNNNNNNNGG	4 cut(s)	501, 709, 710, 941
AgsI	TTSAA	7 cut(s)	61, 145, 337, 583, 857, 1014, 1045
AjiI	CACGTC	1 cut(s)	324
AjnI	CCWGG	7 cut(s)	534, 546, 670, 724, 813, 867, 913
AjuI	GAANNNNNNNTTGG	4 cut(s)	683, 715, 1037, 1069
AluBI	AGCT	3 cut(s)	407, 558, 568
AluI	AGCT	3 cut(s)	407, 558, 568
AlwI	GGATC	1 cut(s)	385
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	7 cut(s)	111, 129, 159, 232, 468, 476, 525
ApeKI	GCWGC	1 cut(s)	555
ApoI	RAATTY	1 cut(s)	979
AspLEI	GCGC	2 cut(s)	192, 271
AspS9I	GGNCC	3 cut(s)	468, 476, 492
AsuC2I	CCSGG	4 cut(s)	98, 110, 490, 966
AsuHPI	GGTGA	2 cut(s)	43, 820
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	492
BanI	GGYRCC	2 cut(s)	93, 686
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbvI	GCAGC	1 cut(s)	567
BccI	CCATC	1 cut(s)	866
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	7 cut(s)	536, 548, 672, 726, 815, 869, 915
BciVI	GTATCC	1 cut(s)	1017
BcnI	CCSGG	4 cut(s)	98, 110, 490, 966
BfaI	CTAG	1 cut(s)	803
BfmI	CTRYAG	1 cut(s)	1023
BfoI	RGCGCY	1 cut(s)	193
BfuI	GTATCC	1 cut(s)	1017
BglII	AGATCT	2 cut(s)	195, 742
BisI	GCNGC	7 cut(s)	77, 267, 307, 388, 391, 421, 556
BlsI	GCNGC	7 cut(s)	78, 268, 308, 389, 392, 422, 557
Bme18I	GGWCC	1 cut(s)	492
BmeT110I	CYCGRG	1 cut(s)	125
BmgBI	CACGTC	1 cut(s)	324
BmgT120I	GGNCC	3 cut(s)	468, 476, 492
BmiI	GGNNCC	4 cut(s)	95, 469, 493, 688
BmrI	ACTGGG	1 cut(s)	852
BmuI	ACTGGG	1 cut(s)	852
BpmI	CTGGAG	4 cut(s)	429, 557, 662, 851
BpuMI	CCSGG	4 cut(s)	98, 110, 490, 966
BsaHI	GRCGYC	3 cut(s)	168, 458, 999
BsaJI	CCNNGG	8 cut(s)	126, 156, 304, 341, 534, 867, 914, 965
BsaWI	WCCGGW	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	4 cut(s)	501, 709, 710, 941
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	3 cut(s)	235, 495, 847
BseBI	CCWGG	7 cut(s)	536, 548, 672, 726, 815, 869, 915
BseDI	CCNNGG	8 cut(s)	126, 156, 304, 341, 534, 867, 914, 965
BseGI	GGATG	2 cut(s)	877, 888
BseLI	CCNNNNNNNGG	4 cut(s)	501, 709, 710, 941
BseMII	CTCAG	2 cut(s)	509, 696
BseNI	ACTGG	3 cut(s)	235, 495, 847
BseRI	GAGGAG	7 cut(s)	230, 411, 414, 417, 578, 659, 1074
BseX3I	CGGCCG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	567
Bsh1236I	CGCG	5 cut(s)	44, 269, 306, 343, 350
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	7 cut(s)	113, 131, 161, 234, 470, 478, 527
BshNI	GGYRCC	2 cut(s)	93, 686
BsiEI	CGRYCG	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	9 cut(s)	37, 98, 110, 114, 231, 471, 479, 489, 965
BslFI	GGGAC	5 cut(s)	359, 455, 505, 528, 803
BslI	CCNNNNNNNGG	4 cut(s)	501, 709, 710, 941
BsmFI	GGGAC	5 cut(s)	359, 455, 505, 528, 803
BsmI	GAATGC	1 cut(s)	951
BsnI	GGCC	7 cut(s)	113, 131, 161, 234, 470, 478, 527
BsoBI	CYCGRG	1 cut(s)	125
Bsp143I	GATC	7 cut(s)	195, 202, 377, 663, 742, 799, 819
BspANI	GGCC	7 cut(s)	113, 131, 161, 234, 470, 478, 527
BspCNI	CTCAG	2 cut(s)	510, 697
BspFNI	CGCG	5 cut(s)	44, 269, 306, 343, 350
BspLI	GGNNCC	4 cut(s)	95, 469, 493, 688
BspPI	GGATC	1 cut(s)	385
BspT107I	GGYRCC	2 cut(s)	93, 686
BsrBI	CCGCTC	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	3 cut(s)	235, 495, 847
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	8 cut(s)	126, 156, 304, 341, 534, 867, 914, 965
BssMI	GATC	7 cut(s)	195, 202, 377, 663, 742, 799, 819
BssNI	GRCGYC	3 cut(s)	168, 458, 999
Bst2UI	CCWGG	7 cut(s)	536, 548, 672, 726, 815, 869, 915
Bst4CI	ACNGT	1 cut(s)	794
Bst6I	CTCTTC	1 cut(s)	256
BstACI	GRCGYC	3 cut(s)	168, 458, 999
BstC8I	GCNNGC	3 cut(s)	46, 81, 553
BstDEI	CTNAG	2 cut(s)	518, 705
BstDSI	CCRYGG	2 cut(s)	304, 341
BstF5I	GGATG	2 cut(s)	877, 888
BstFNI	CGCG	5 cut(s)	44, 269, 306, 343, 350
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	2 cut(s)	192, 271
BstKTI	GATC	7 cut(s)	198, 205, 380, 666, 745, 802, 822
BstMBI	GATC	7 cut(s)	195, 202, 377, 663, 742, 799, 819
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	7 cut(s)	536, 548, 672, 726, 815, 869, 915
BstSFI	CTRYAG	1 cut(s)	1023
BstUI	CGCG	5 cut(s)	44, 269, 306, 343, 350
BstV1I	GCAGC	1 cut(s)	567
BstX2I	RGATCY	2 cut(s)	195, 742
BstXI	CCANNNNNNTGG	1 cut(s)	535
BstYI	RGATCY	2 cut(s)	195, 742
BstZI	CGGCCG	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	1017
BsuRI	GGCC	7 cut(s)	113, 131, 161, 234, 470, 478, 527
BtgI	CCRYGG	2 cut(s)	304, 341
BtgZI	GCGATG	1 cut(s)	98
BtrI	CACGTC	1 cut(s)	324
BtsCI	GGATG	2 cut(s)	877, 888
BtsI	GCAGTG	1 cut(s)	824
BtsIMutI	CAGTG	2 cut(s)	824, 840
Cac8I	GCNNGC	3 cut(s)	46, 81, 553
CfoI	GCGC	2 cut(s)	192, 271
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	3 cut(s)	468, 476, 492
Cfr42I	CCGCGG	2 cut(s)	307, 344
CseI	GACGC	1 cut(s)	356
CsiI	ACCWGGT	1 cut(s)	670
Csp6I	GTAC	2 cut(s)	70, 932
CviAII	CATG	1 cut(s)	773
CviQI	GTAC	2 cut(s)	70, 932
DdeI	CTNAG	2 cut(s)	518, 705
DpnI	GATC	7 cut(s)	197, 204, 379, 665, 744, 801, 821
DpnII	GATC	7 cut(s)	195, 202, 377, 663, 742, 799, 819
EaeI	YGGCCR	2 cut(s)	111, 232
EagI	CGGCCG	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
EciI	GGCGGA	3 cut(s)	253, 408, 438
EclXI	CGGCCG	1 cut(s)	111
Eco147I	AGGCCT	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	904
Eco47I	GGWCC	1 cut(s)	492
Eco52I	CGGCCG	1 cut(s)	111
Eco57I	CTGAAG	2 cut(s)	47, 436
Eco88I	CYCGRG	1 cut(s)	125
EcoRII	CCWGG	7 cut(s)	534, 546, 670, 724, 813, 867, 913
EcoRV	GATATC	1 cut(s)	904
FaeI	CATG	1 cut(s)	776
FaiI	YATR	6 cut(s)	23, 438, 573, 774, 783, 1072
FalI	AAGNNNNNCTT	2 cut(s)	683, 715
FaqI	GGGAC	5 cut(s)	359, 455, 505, 528, 803
FatI	CATG	1 cut(s)	772
FauI	CCCGC	2 cut(s)	266, 336
Fnu4HI	GCNGC	7 cut(s)	77, 267, 307, 388, 391, 421, 556
FokI	GGATG	2 cut(s)	875, 884
Fsp4HI	GCNGC	7 cut(s)	77, 267, 307, 388, 391, 421, 556
FspBI	CTAG	1 cut(s)	803
GlaI	GCGC	2 cut(s)	191, 270
GluI	GCNGC	7 cut(s)	77, 267, 307, 388, 391, 421, 556
GsuI	CTGGAG	4 cut(s)	429, 557, 662, 851
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	7 cut(s)	113, 131, 161, 234, 470, 478, 527
HapII	CCGG	9 cut(s)	37, 98, 110, 114, 231, 471, 479, 489, 965
HgaI	GACGC	1 cut(s)	356
HhaI	GCGC	2 cut(s)	192, 271
Hin1I	GRCGYC	3 cut(s)	168, 458, 999
Hin1II	CATG	1 cut(s)	776
Hin6I	GCGC	2 cut(s)	190, 269
HinP1I	GCGC	2 cut(s)	190, 269
HincII	GTYRAC	1 cut(s)	897
HindII	GTYRAC	1 cut(s)	897
HinfI	GANTC	7 cut(s)	134, 579, 617, 637, 850, 880, 987
HpaII	CCGG	9 cut(s)	37, 98, 110, 114, 231, 471, 479, 489, 965
HphI	GGTGA	2 cut(s)	43, 820
Hpy166II	GTNNAC	3 cut(s)	34, 811, 897
Hpy188I	TCNGA	6 cut(s)	157, 178, 382, 636, 747, 1039
Hpy188III	TCNNGA	8 cut(s)	454, 513, 583, 603, 641, 719, 854, 1014
Hpy8I	GTNNAC	3 cut(s)	34, 811, 897
Hpy99I	CGWCG	3 cut(s)	170, 328, 463
HpyAV	CCTTC	8 cut(s)	22, 58, 517, 703, 709, 870, 935, 1020
HpyCH4III	ACNGT	1 cut(s)	794
HpyCH4IV	ACGT	4 cut(s)	168, 323, 458, 999
HpyCH4V	TGCA	2 cut(s)	555, 776
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	2 cut(s)	518, 705
HpySE526I	ACGT	4 cut(s)	168, 323, 458, 999
Hsp92I	GRCGYC	3 cut(s)	168, 458, 999
Hsp92II	CATG	1 cut(s)	776
HspAI	GCGC	2 cut(s)	190, 269
KspI	CCGCGG	2 cut(s)	307, 344
Kzo9I	GATC	7 cut(s)	195, 202, 377, 663, 742, 799, 819
LmnI	GCTCC	3 cut(s)	266, 404, 565
Lsp1109I	GCAGC	1 cut(s)	567
MabI	ACCWGGT	1 cut(s)	670
MaeI	CTAG	1 cut(s)	803
MaeII	ACGT	4 cut(s)	168, 323, 458, 999
MalI	GATC	7 cut(s)	197, 204, 379, 665, 744, 801, 821
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	7 cut(s)	195, 202, 377, 663, 742, 799, 819
MboII	GAAGA	8 cut(s)	73, 243, 442, 598, 601, 607, 691, 859
MflI	RGATCY	2 cut(s)	195, 742
MluCI	AATT	1 cut(s)	979
MlyI	GAGTC	2 cut(s)	143, 631
MmeI	TCCRAC	2 cut(s)	201, 656
MseI	TTAA	1 cut(s)	653
MspA1I	CMGCKG	2 cut(s)	306, 343
MspI	CCGG	9 cut(s)	37, 98, 110, 114, 231, 471, 479, 489, 965
Mva1269I	GAATGC	1 cut(s)	951
MvaI	CCWGG	7 cut(s)	536, 548, 672, 726, 815, 869, 915
MvnI	CGCG	5 cut(s)	44, 269, 306, 343, 350
MwoI	GCNNNNNNNGC	1 cut(s)	277
NciI	CCSGG	4 cut(s)	98, 110, 490, 966
NdeII	GATC	7 cut(s)	195, 202, 377, 663, 742, 799, 819
NlaIII	CATG	1 cut(s)	776
NlaIV	GGNNCC	4 cut(s)	95, 469, 493, 688
NmeAIII	GCCGAG	2 cut(s)	157, 391
PceI	AGGCCT	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PctI	GAATGC	1 cut(s)	951
PfeI	GAWTC	5 cut(s)	579, 617, 850, 880, 987
PkrI	GCNGC	7 cut(s)	78, 268, 308, 389, 392, 422, 557
PleI	GAGTC	2 cut(s)	142, 631
PpsI	GAGTC	2 cut(s)	142, 631
PsiI	TTATAA	2 cut(s)	573, 783
Psp6I	CCWGG	7 cut(s)	534, 546, 670, 724, 813, 867, 913
PspGI	CCWGG	7 cut(s)	534, 546, 670, 724, 813, 867, 913
PspN4I	GGNNCC	4 cut(s)	95, 469, 493, 688
PspPI	GGNCC	3 cut(s)	468, 476, 492
PsuI	RGATCY	2 cut(s)	195, 742
RsaI	GTAC	2 cut(s)	71, 933
RsaNI	GTAC	2 cut(s)	70, 932
SacII	CCGCGG	2 cut(s)	307, 344
SaqAI	TTAA	1 cut(s)	653
SatI	GCNGC	7 cut(s)	77, 267, 307, 388, 391, 421, 556
Sau3AI	GATC	7 cut(s)	195, 202, 377, 663, 742, 799, 819
Sau96I	GGNCC	3 cut(s)	468, 476, 492
SchI	GAGTC	2 cut(s)	143, 631
SexAI	ACCWGGT	1 cut(s)	670
SfcI	CTRYAG	1 cut(s)	1023
Sfr303I	CCGCGG	2 cut(s)	307, 344
SgrBI	CCGCGG	2 cut(s)	307, 344
SinI	GGWCC	1 cut(s)	492
Sse9I	AATT	1 cut(s)	979
SseBI	AGGCCT	1 cut(s)	161
SspMI	CTAG	1 cut(s)	803
StuI	AGGCCT	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	794
TaiI	ACGT	4 cut(s)	171, 326, 461, 1002
TaqI	TCGA	4 cut(s)	9, 461, 602, 615
TaqII	GACCGA	1 cut(s)	914
TasI	AATT	1 cut(s)	979
TauI	GCSGC	6 cut(s)	79, 269, 309, 390, 393, 423
TfiI	GAWTC	5 cut(s)	579, 617, 850, 880, 987
Tru1I	TTAA	1 cut(s)	653
Tru9I	TTAA	1 cut(s)	653
TscAI	CASTG	2 cut(s)	831, 847
TseI	GCWGC	1 cut(s)	555
TspDTI	ATGAA	4 cut(s)	608, 777, 954, 1056
TspRI	CASTG	2 cut(s)	831, 847
VpaK11BI	GGWCC	1 cut(s)	492
XapI	RAATTY	1 cut(s)	979
XspI	CTAG	1 cut(s)	803
ZraI	GACGTC	3 cut(s)	169, 459, 1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.