Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010652

Physical Location & Seq

Genomic Coordinates Reverse (-)

8879812 .. 8883345

Gene Structure 3534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGGTGTGGATTACTACAACATACTGAAAGTGAATCGGAACGCGAGCGAGGACGACTTGAAGAAAGCCTACAAGCGCCTCGCCATGATCTGGCACCCCGACAAAAACCCCGCCGGGAAACGCCCCGAGGCCGAGTCCAAGTTCAAGCAAATCTCCGAGGCCTACGACGTCCTCTCCGACCCCACCAAGCGCCAGATCTACGATCTCTACGGCGAGGAGGCTCTCAAATCCGGCCAATTCCCCCCTCCCTCCTCCTCCCGCTCCGCCGCGCCCCACCACCACCAGCAACACCCTCACTACTACCACCGCGCCAACAACAACCACAACAACGCCACGTCGTTTCGGTTTAACCCGAGGGACGCGGACGATATTTACGCCGAGATTTTCGGATCGGAGGGCGGCGGGAGCAGCGTGGCTGGCGGGAGTGGCGGCGGGAGGGGGTATAGGGACGGGTTCTTCAGGACGTCGAATGGGGCCGGTGGGCCGGAGTTCGGTGGGACTAGTAGTGGGCCTGGGCCGGGGTTGAGGAAGGCCAATGCTGTGGAGAATAATCTGGCGTGCAGCTTGGAGGAGCTCTATAAGGGATTCAAGAAGAAGATGAAGATTTCCAGAAGCATTTTCGATTCTGCTGGTAAGGTTCGGACTATGGAGGAGATCTTAACCATTGAGATCAAACCTGGTTGGAAGAAAGGGACAAAGATAACCTTCCCTGAGAAGGGTAATCAAGAGCCTGGTGTTATTCCAGCAGATCTGATTTTTGTCGTTGATGAAAAACCACATCCACTTTATAAGAGGGATGGTAATGATCTCGTGGTGAACCAGGAAATCACACTGCTTGAGGCACTCACCGGTAAGACGCTTGATCTCACCACCCTAGACGGAAGGAATCTCATGATCCCATTGACAGATATCATCAAACCTGGAGCTGATATGGTTGTACCAAATGAAGGAATGCCGATCTCAAAAGAACCAGGGAGAAAGGGAAATTTGAGAATCAAGTTTGACGTCAAATATCCTTCAAGACTTACCACAGAACAGAAATCAGATTTGAAAAGAGTTTTGGGAGGAGTTTCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

360

Amino Acids

39.57

Weight (kDa)

9.14

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 68	2.5e-26	DnaJ domain
DnaJ_C	PF01556	182 - 339	1.3e-40	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47940
fragaria_vesca	FvH4_5g15710
malus_domestica	MD06G1186100.v1.1 MD07G1162200.v1.1 MD07G1162300.v1.1 MD14G1192300.v1.1
prunus_persica	Prupe.5G184900_v2.0.a1
pyrus_communis	pycom06g16550 pycom14g16000
rosa_chinensis	RchiOBHm_Chr7g0180401
rosa_laevigata	RLG00000005270
rosa_multiflora	Rmu_sc0018872.1_g000002 Rmu_sc0042636.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272920
rosa_rugosa	Rorug06G0432800
rosa_samantha	Rh7AG033400 Rh7BG033300 Rh7CG035300 Rh7DG033800
rosa_wichuraiana	Rw7G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	789
AatII	GACGTC	3 cut(s)	171, 467, 1008
AccB1I	GGYRCC	1 cut(s)	93
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccBSI	CCGCTC	1 cut(s)	261
AccII	CGCG	4 cut(s)	44, 269, 309, 362
AclWI	GGATC	2 cut(s)	397, 889
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	985
AcuI	CTGAAG	1 cut(s)	442
AcyI	GRCGYC	3 cut(s)	168, 464, 1005
AfaI	GTAC	1 cut(s)	939
AfiI	CCNNNNNNNGG	6 cut(s)	90, 491, 518, 715, 716, 947
AgeI	ACCGGT	1 cut(s)	848
AgsI	TTSAA	5 cut(s)	61, 145, 589, 1020, 1051
AhlI	ACTAGT	1 cut(s)	500
AjiI	CACGTC	1 cut(s)	336
AjnI	CCWGG	6 cut(s)	511, 676, 730, 819, 919, 970
AjuI	GAANNNNNNNTTGG	2 cut(s)	1043, 1075
AluBI	AGCT	3 cut(s)	564, 574, 926
AluI	AGCT	3 cut(s)	564, 574, 926
Alw21I	GWGCWC	1 cut(s)	576
AlwI	GGATC	2 cut(s)	397, 889
Ama87I	CYCGRG	2 cut(s)	125, 352
AoxI	GGCC	8 cut(s)	129, 159, 232, 474, 482, 509, 515, 531
ApeKI	GCWGC	2 cut(s)	408, 561
ApoI	RAATTY	1 cut(s)	985
AsiGI	ACCGGT	1 cut(s)	848
AspLEI	GCGC	4 cut(s)	78, 192, 271, 311
AspS9I	GGNCC	4 cut(s)	474, 482, 509, 515
AsuC2I	CCSGG	2 cut(s)	115, 519
AsuHPI	GGTGA	3 cut(s)	826, 838, 859
AvaI	CYCGRG	2 cut(s)	125, 352
BanI	GGYRCC	1 cut(s)	93
BanII	GRGCYC	1 cut(s)	576
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BauI	CACGAG	1 cut(s)	809
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	2 cut(s)	420, 573
BccI	CCATC	1 cut(s)	791
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	6 cut(s)	513, 678, 732, 821, 921, 972
BcnI	CCSGG	2 cut(s)	115, 519
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	2 cut(s)	501, 875
BfoI	RGCGCY	2 cut(s)	79, 193
BglII	AGATCT	3 cut(s)	195, 654, 748
BisI	GCNGC	5 cut(s)	267, 400, 409, 430, 562
BlsI	GCNGC	5 cut(s)	268, 401, 410, 431, 563
Bme1390I	CCNGG	8 cut(s)	115, 513, 519, 678, 732, 821, 921, 972
BmeT110I	CYCGRG	2 cut(s)	125, 352
BmgBI	CACGTC	1 cut(s)	336
BmgT120I	GGNCC	4 cut(s)	474, 482, 509, 515
BmiI	GGNNCC	2 cut(s)	95, 475
BmrFI	CCNGG	8 cut(s)	115, 513, 519, 678, 732, 821, 921, 972
BpmI	CTGGAG	1 cut(s)	942
BpuEI	CTTGAG	1 cut(s)	857
BpuMI	CCSGG	2 cut(s)	115, 519
BsaHI	GRCGYC	3 cut(s)	168, 464, 1005
BsaJI	CCNNGG	6 cut(s)	126, 156, 353, 512, 518, 971
BsaWI	WCCGGW	1 cut(s)	848
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	6 cut(s)	90, 491, 518, 715, 716, 947
Bse118I	RCCGGY	2 cut(s)	476, 848
BseBI	CCWGG	6 cut(s)	513, 678, 732, 821, 921, 972
BseDI	CCNNGG	6 cut(s)	126, 156, 353, 512, 518, 971
BseGI	GGATG	2 cut(s)	778, 802
BseLI	CCNNNNNNNGG	6 cut(s)	90, 491, 518, 715, 716, 947
BseMII	CTCAG	1 cut(s)	702
BseRI	GAGGAG	6 cut(s)	230, 241, 244, 584, 665, 1080
BseXI	GCAGC	2 cut(s)	420, 573
BsgI	GTGCAG	1 cut(s)	580
Bsh1236I	CGCG	4 cut(s)	44, 269, 309, 362
BshFI	GGCC	8 cut(s)	131, 161, 234, 476, 484, 511, 517, 533
BshNI	GGYRCC	1 cut(s)	93
BshTI	ACCGGT	1 cut(s)	848
BsiHKAI	GWGCWC	1 cut(s)	576
BsiHKCI	CYCGRG	2 cut(s)	125, 352
BsiSI	CCGG	6 cut(s)	114, 231, 477, 485, 518, 849
BslFI	GGGAC	4 cut(s)	371, 461, 511, 706
BslI	CCNNNNNNNGG	6 cut(s)	90, 491, 518, 715, 716, 947
BsmFI	GGGAC	4 cut(s)	371, 461, 511, 706
BsmI	GAATGC	1 cut(s)	957
BsnI	GGCC	8 cut(s)	131, 161, 234, 476, 484, 511, 517, 533
BsoBI	CYCGRG	2 cut(s)	125, 352
Bsp1286I	GDGCHC	1 cut(s)	576
BspANI	GGCC	8 cut(s)	131, 161, 234, 476, 484, 511, 517, 533
BspCNI	CTCAG	1 cut(s)	703
BspFNI	CGCG	4 cut(s)	44, 269, 309, 362
BspHI	TCATGA	1 cut(s)	891
BspLI	GGNNCC	2 cut(s)	95, 475
BspPI	GGATC	2 cut(s)	397, 889
BspT107I	GGYRCC	1 cut(s)	93
BsrBI	CCGCTC	1 cut(s)	261
BsrFI	RCCGGY	2 cut(s)	476, 848
BssAI	RCCGGY	2 cut(s)	476, 848
BssECI	CCNNGG	6 cut(s)	126, 156, 353, 512, 518, 971
BssNI	GRCGYC	3 cut(s)	168, 464, 1005
BssSI	CACGAG	1 cut(s)	809
Bst2BI	CACGAG	1 cut(s)	809
Bst2UI	CCWGG	6 cut(s)	513, 678, 732, 821, 921, 972
BstACI	GRCGYC	3 cut(s)	168, 464, 1005
BstC8I	GCNNGC	3 cut(s)	46, 418, 559
BstDEI	CTNAG	1 cut(s)	711
BstF5I	GGATG	2 cut(s)	778, 802
BstFNI	CGCG	4 cut(s)	44, 269, 309, 362
BstH2I	RGCGCY	2 cut(s)	79, 193
BstHHI	GCGC	4 cut(s)	78, 192, 271, 311
BstMWI	GCNNNNNNNGC	4 cut(s)	405, 408, 417, 426
BstNI	CCWGG	6 cut(s)	513, 678, 732, 821, 921, 972
BstSCI	CCNGG	8 cut(s)	113, 511, 517, 676, 730, 819, 919, 970
BstUI	CGCG	4 cut(s)	44, 269, 309, 362
BstV1I	GCAGC	2 cut(s)	420, 573
BstX2I	RGATCY	3 cut(s)	195, 654, 748
BstXI	CCANNNNNNTGG	1 cut(s)	541
BstYI	RGATCY	3 cut(s)	195, 654, 748
BsuRI	GGCC	8 cut(s)	131, 161, 234, 476, 484, 511, 517, 533
BtrI	CACGTC	1 cut(s)	336
BtsCI	GGATG	2 cut(s)	778, 802
BtsI	GCAGTG	1 cut(s)	830
BtsIMutI	CAGTG	1 cut(s)	830
Cac8I	GCNNGC	3 cut(s)	46, 418, 559
CciI	TCATGA	1 cut(s)	891
CfoI	GCGC	4 cut(s)	78, 192, 271, 311
Cfr10I	RCCGGY	2 cut(s)	476, 848
Cfr13I	GGNCC	4 cut(s)	474, 482, 509, 515
CseI	GACGC	2 cut(s)	368, 865
CsiI	ACCWGGT	1 cut(s)	676
Csp6I	GTAC	1 cut(s)	938
CspAI	ACCGGT	1 cut(s)	848
CviAII	CATG	2 cut(s)	85, 892
CviQI	GTAC	1 cut(s)	938
DdeI	CTNAG	1 cut(s)	711
EaeI	YGGCCR	1 cut(s)	232
EciI	GGCGGA	1 cut(s)	253
Ecl136II	GAGCTC	1 cut(s)	574
Eco147I	AGGCCT	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	576
Eco32I	GATATC	1 cut(s)	910
Eco53kI	GAGCTC	1 cut(s)	574
Eco57I	CTGAAG	1 cut(s)	442
Eco88I	CYCGRG	2 cut(s)	125, 352
EcoICRI	GAGCTC	1 cut(s)	574
EcoRII	CCWGG	6 cut(s)	511, 676, 730, 819, 919, 970
EcoRV	GATATC	1 cut(s)	910
EcoT38I	GRGCYC	1 cut(s)	576
FaeI	CATG	2 cut(s)	88, 895
FaiI	YATR	9 cut(s)	23, 86, 444, 579, 647, 789, 893, 932, 1078
FalI	AAGNNNNNCTT	2 cut(s)	689, 721
FaqI	GGGAC	4 cut(s)	371, 461, 511, 706
FatI	CATG	2 cut(s)	84, 891
FauI	CCCGC	5 cut(s)	118, 266, 395, 413, 425
Fnu4HI	GCNGC	5 cut(s)	267, 400, 409, 430, 562
FokI	GGATG	2 cut(s)	765, 809
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	5 cut(s)	267, 400, 409, 430, 562
FspBI	CTAG	2 cut(s)	501, 875
GlaI	GCGC	4 cut(s)	77, 191, 270, 310
GluI	GCNGC	5 cut(s)	267, 400, 409, 430, 562
GsuI	CTGGAG	1 cut(s)	942
HaeII	RGCGCY	2 cut(s)	79, 193
HaeIII	GGCC	8 cut(s)	131, 161, 234, 476, 484, 511, 517, 533
HapII	CCGG	6 cut(s)	114, 231, 477, 485, 518, 849
HgaI	GACGC	2 cut(s)	368, 865
HhaI	GCGC	4 cut(s)	78, 192, 271, 311
Hin1I	GRCGYC	3 cut(s)	168, 464, 1005
Hin1II	CATG	2 cut(s)	88, 895
Hin6I	GCGC	4 cut(s)	76, 190, 269, 309
HinP1I	GCGC	4 cut(s)	76, 190, 269, 309
HinfI	GANTC	6 cut(s)	34, 134, 585, 623, 886, 993
HpaII	CCGG	6 cut(s)	114, 231, 477, 485, 518, 849
HphI	GGTGA	3 cut(s)	826, 838, 859
Hpy166II	GTNNAC	1 cut(s)	817
Hpy188I	TCNGA	8 cut(s)	39, 157, 178, 389, 394, 642, 753, 1045
Hpy188III	TCNNGA	6 cut(s)	460, 589, 609, 725, 892, 1020
Hpy8I	GTNNAC	1 cut(s)	817
Hpy99I	CGWCG	3 cut(s)	170, 340, 469
HpyAV	CCTTC	6 cut(s)	523, 709, 715, 876, 941, 1026
HpyCH4IV	ACGT	4 cut(s)	168, 335, 464, 1005
HpyCH4V	TGCA	1 cut(s)	561
HpyF10VI	GCNNNNNNNGC	4 cut(s)	405, 408, 417, 426
HpyF3I	CTNAG	1 cut(s)	711
HpySE526I	ACGT	4 cut(s)	168, 335, 464, 1005
Hsp92I	GRCGYC	3 cut(s)	168, 464, 1005
Hsp92II	CATG	2 cut(s)	88, 895
HspAI	GCGC	4 cut(s)	76, 190, 269, 309
LmnI	GCTCC	4 cut(s)	266, 405, 571, 923
Lsp1109I	GCAGC	2 cut(s)	420, 573
MabI	ACCWGGT	1 cut(s)	676
MaeI	CTAG	2 cut(s)	501, 875
MaeII	ACGT	4 cut(s)	168, 335, 464, 1005
MbiI	CCGCTC	1 cut(s)	261
MboII	GAAGA	6 cut(s)	73, 448, 604, 607, 613, 697
MflI	RGATCY	3 cut(s)	195, 654, 748
MhlI	GDGCHC	1 cut(s)	576
MluCI	AATT	2 cut(s)	236, 985
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	2 cut(s)	201, 662
MseI	TTAA	2 cut(s)	348, 659
MspI	CCGG	6 cut(s)	114, 231, 477, 485, 518, 849
MspR9I	CCNGG	8 cut(s)	115, 513, 519, 678, 732, 821, 921, 972
Mva1269I	GAATGC	1 cut(s)	957
MvaI	CCWGG	6 cut(s)	513, 678, 732, 821, 921, 972
MvnI	CGCG	4 cut(s)	44, 269, 309, 362
MwoI	GCNNNNNNNGC	4 cut(s)	405, 408, 417, 426
NciI	CCSGG	2 cut(s)	115, 519
NlaIII	CATG	2 cut(s)	88, 895
NlaIV	GGNNCC	2 cut(s)	95, 475
NmeAIII	GCCGAG	2 cut(s)	157, 403
PagI	TCATGA	1 cut(s)	891
PceI	AGGCCT	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PctI	GAATGC	1 cut(s)	957
PfeI	GAWTC	5 cut(s)	34, 585, 623, 886, 993
PflMI	CCANNNNNTGG	1 cut(s)	90
PinAI	ACCGGT	1 cut(s)	848
PkrI	GCNGC	5 cut(s)	268, 401, 410, 431, 563
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PsiI	TTATAA	1 cut(s)	789
Psp124BI	GAGCTC	1 cut(s)	576
Psp6I	CCWGG	6 cut(s)	511, 676, 730, 819, 919, 970
PspGI	CCWGG	6 cut(s)	511, 676, 730, 819, 919, 970
PspN4I	GGNNCC	2 cut(s)	95, 475
PspPI	GGNCC	4 cut(s)	474, 482, 509, 515
PsuI	RGATCY	3 cut(s)	195, 654, 748
RsaI	GTAC	1 cut(s)	939
RsaNI	GTAC	1 cut(s)	938
SacI	GAGCTC	1 cut(s)	576
SaqAI	TTAA	2 cut(s)	348, 659
SatI	GCNGC	5 cut(s)	267, 400, 409, 430, 562
Sau96I	GGNCC	4 cut(s)	474, 482, 509, 515
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	8 cut(s)	115, 513, 519, 678, 732, 821, 921, 972
SduI	GDGCHC	1 cut(s)	576
SexAI	ACCWGGT	1 cut(s)	676
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
SpeI	ACTAGT	1 cut(s)	500
Sse9I	AATT	2 cut(s)	236, 985
SseBI	AGGCCT	1 cut(s)	161
SspMI	CTAG	2 cut(s)	501, 875
SstI	GAGCTC	1 cut(s)	576
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	8 cut(s)	113, 511, 517, 676, 730, 819, 919, 970
TaiI	ACGT	4 cut(s)	171, 338, 467, 1008
TaqI	TCGA	2 cut(s)	467, 621
TasI	AATT	2 cut(s)	236, 985
TauI	GCSGC	3 cut(s)	269, 402, 432
TfiI	GAWTC	5 cut(s)	34, 585, 623, 886, 993
Tru1I	TTAA	2 cut(s)	348, 659
Tru9I	TTAA	2 cut(s)	348, 659
TscAI	CASTG	1 cut(s)	837
TseI	GCWGC	2 cut(s)	408, 561
TspDTI	ATGAA	4 cut(s)	614, 783, 960, 1062
TspGWI	ACGGA	1 cut(s)	894
TspRI	CASTG	1 cut(s)	837
Van91I	CCANNNNNTGG	1 cut(s)	90
XapI	RAATTY	1 cut(s)	985
XspI	CTAG	2 cut(s)	501, 875
ZraI	GACGTC	3 cut(s)	169, 465, 1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.