Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0010652

Physical Location & Seq

Genomic Coordinates Forward (+)

23742117 .. 23743187

Gene Structure 1071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1162300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGATTTGGCACCCAGACAAAAACCCCATCGAGAAGCGGTTGGAAGCGGAGGCCAAGTTCAAGCAAATCTCAGAGGCCTACAACGTCCTCGGCGACCTCACCAAGCACCAGATCTACGACCTCTACAGCGATGAGGCTCTGAAATCGGGGTATACTGATGGGTTCTTTAGAACGTCCAATTATGGTGGGCCAGAGTTTGTGGGACCCAGTGGGGTTGCGCCTGTGAGGAAGGCCAAAGGGAAATTTGAAAATTTGTTGCCCTGCAACTTGGAAGAGCTCTACAAGGGTGTCAAGAAGAAGATGAAGATTTTCAGAAACATCTACGATGCCGTTGTTGCTGGTAAGGTTCGGACTGTGGAGGAGATTTTGACTATTGAGATCAGACCAGGTTGGAAGAAGGGCACAAAGATCACCTTCCCTGAGAAGGGTAACCAAGAGCAAGGTGTGATTCAGGCAGATCTAATTTTTATTATAGACAAGAAACCGCACACATTTCACAAGAAAGACATTAATAACCTGGTGGTCAACCAAGAGATAACACTGCTGGAGGCACTCACGGGCAAGACTCTTGACCTTACCACCCTAGATGGACGGAATCTCATGATCCCATTAACTGATATCATCAAACCCGGAGCTGAAATGATGGTACCAAATGAGGGAATGTCGATCTCAAAAAAACCTGGAAAAAAGGGAAATTTGAGAATCAAGTTTGATGTCAAGTATCCTTCAAGGCTTACCACAGAACAGAAATCTAATATGCACAAAACATTTTCTAAAAGACAGCAAAGCAAAGCAGCGCAAGGAAAGAGAAAGAAAAGCAAAAGAAGAAAGCAGAAAGAAAAACAATCAAGTGAGCTACGGCACAAAAGCAAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

293

Amino Acids

33.36

Weight (kDa)

9.9

Isoelectric Point (pI)

49.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	2 - 40	6.9e-10	DnaJ domain
DnaJ_C	PF01556	86 - 242	6.8e-35	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47940
fragaria_vesca	FvH4_5g15710
malus_domestica	MD06G1186100.v1.1 MD07G1162200.v1.1 MD07G1162300.v1.1 MD14G1192300.v1.1
prunus_persica	Prupe.5G184900_v2.0.a1
pyrus_communis	pycom06g16550 pycom14g16000
rosa_chinensis	RchiOBHm_Chr7g0180401
rosa_laevigata	RLG00000005270
rosa_multiflora	Rmu_sc0018872.1_g000002 Rmu_sc0042636.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272920
rosa_rugosa	Rorug06G0432800
rosa_samantha	Rh7AG033400 Rh7BG033300 Rh7CG035300 Rh7DG033800
rosa_wichuraiana	Rw7G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	646
AccB1I	GGYRCC	2 cut(s)	9, 646
AccI	GTMKAC	1 cut(s)	152
AciI	CCGC	3 cut(s)	37, 47, 485
AclWI	GGATC	1 cut(s)	598
AcsI	RAATTY	3 cut(s)	242, 250, 694
AfaI	GTAC	1 cut(s)	648
AfiI	CCNNNNNNNGG	3 cut(s)	424, 425, 656
AgsI	TTSAA	3 cut(s)	61, 248, 729
AjnI	CCWGG	3 cut(s)	385, 516, 679
AloI	GAACNNNNNNTCC	2 cut(s)	41, 73
AluBI	AGCT	3 cut(s)	277, 635, 856
AluI	AGCT	3 cut(s)	277, 635, 856
Alw21I	GWGCWC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	598
AoxI	GGCC	4 cut(s)	51, 75, 188, 231
ApeKI	GCWGC	1 cut(s)	794
ApoI	RAATTY	3 cut(s)	242, 250, 694
AseI	ATTAAT	1 cut(s)	510
Asp700I	GAANNNNTTC	1 cut(s)	308
Asp718I	GGTACC	1 cut(s)	646
AspLEI	GCGC	2 cut(s)	220, 799
AspS9I	GGNCC	2 cut(s)	188, 203
AsuC2I	CCSGG	1 cut(s)	630
AsuHPI	GGTGA	2 cut(s)	91, 403
AvaII	GGWCC	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	404
BanI	GGYRCC	2 cut(s)	9, 646
BanII	GRGCYC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	806
BccI	CCATC	4 cut(s)	35, 152, 581, 637
BceAI	ACGGC	2 cut(s)	314, 875
BciT130I	CCWGG	3 cut(s)	387, 518, 681
BciVI	GTATCC	1 cut(s)	732
BcnI	CCSGG	1 cut(s)	630
BfaI	CTAG	1 cut(s)	584
BfmI	CTRYAG	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	732
BglII	AGATCT	2 cut(s)	111, 457
BisI	GCNGC	1 cut(s)	795
BlsI	GCNGC	1 cut(s)	796
Bme1390I	CCNGG	4 cut(s)	387, 518, 630, 681
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	188, 203
BmiI	GGNNCC	4 cut(s)	11, 204, 205, 648
BmrFI	CCNGG	4 cut(s)	387, 518, 630, 681
BmrI	ACTGGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	316
BmuI	ACTGGG	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	566
BpuMI	CCSGG	1 cut(s)	630
BsaJI	CCNNGG	1 cut(s)	88
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	3 cut(s)	424, 425, 656
Bse1I	ACTGG	1 cut(s)	207
BseBI	CCWGG	3 cut(s)	387, 518, 681
BseDI	CCNNGG	1 cut(s)	88
BseLI	CCNNNNNNNGG	3 cut(s)	424, 425, 656
BseMII	CTCAG	2 cut(s)	84, 411
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	374
BseSI	GKGCMC	1 cut(s)	404
BseXI	GCAGC	1 cut(s)	806
BshFI	GGCC	4 cut(s)	53, 77, 190, 233
BshNI	GGYRCC	2 cut(s)	9, 646
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	630
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	3 cut(s)	424, 425, 656
BsmFI	GGGAC	1 cut(s)	216
BsnI	GGCC	4 cut(s)	53, 77, 190, 233
Bsp1286I	GDGCHC	2 cut(s)	279, 404
Bsp143I	GATC	6 cut(s)	111, 378, 408, 457, 603, 666
BspACI	CCGC	3 cut(s)	37, 47, 485
BspANI	GGCC	4 cut(s)	53, 77, 190, 233
BspCNI	CTCAG	2 cut(s)	83, 412
BspHI	TCATGA	1 cut(s)	600
BspLI	GGNNCC	4 cut(s)	11, 204, 205, 648
BspPI	GGATC	1 cut(s)	598
BspQI	GCTCTTC	1 cut(s)	267
BspT107I	GGYRCC	2 cut(s)	9, 646
BsrI	ACTGG	1 cut(s)	207
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	6 cut(s)	111, 378, 408, 457, 603, 666
BssNAI	GTATAC	1 cut(s)	153
Bst1107I	GTATAC	1 cut(s)	153
Bst2UI	CCWGG	3 cut(s)	387, 518, 681
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	267
BstDEI	CTNAG	2 cut(s)	70, 420
BstEII	GGTNACC	1 cut(s)	428
BstHHI	GCGC	2 cut(s)	220, 799
BstKTI	GATC	6 cut(s)	114, 381, 411, 460, 606, 669
BstMBI	GATC	6 cut(s)	111, 378, 408, 457, 603, 666
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	3 cut(s)	387, 518, 681
BstPI	GGTNACC	1 cut(s)	428
BstSCI	CCNGG	4 cut(s)	385, 516, 628, 679
BstSFI	CTRYAG	1 cut(s)	124
BstSLI	GKGCMC	1 cut(s)	404
BstV1I	GCAGC	1 cut(s)	806
BstX2I	RGATCY	2 cut(s)	111, 457
BstYI	RGATCY	2 cut(s)	111, 457
BstZ17I	GTATAC	1 cut(s)	153
BsuI	GTATCC	1 cut(s)	732
BsuRI	GGCC	4 cut(s)	53, 77, 190, 233
BtgZI	GCGATG	1 cut(s)	144
BtsI	GCAGTG	1 cut(s)	539
BtsIMutI	CAGTG	2 cut(s)	214, 539
CciI	TCATGA	1 cut(s)	600
CfoI	GCGC	2 cut(s)	220, 799
Cfr13I	GGNCC	2 cut(s)	188, 203
CsiI	ACCWGGT	2 cut(s)	385, 516
Csp6I	GTAC	1 cut(s)	647
CspCI	CAANNNNNGTGG	2 cut(s)	166, 201
CviAII	CATG	1 cut(s)	601
CviJI	RGCY	9 cut(s)	53, 77, 137, 190, 233, 277, 635, 733, 856
CviKI_1	RGCY	9 cut(s)	53, 77, 137, 190, 233, 277, 635, 733, 856
CviQI	GTAC	1 cut(s)	647
DdeI	CTNAG	2 cut(s)	70, 420
DpnI	GATC	6 cut(s)	113, 380, 410, 459, 605, 668
DpnII	GATC	6 cut(s)	111, 378, 408, 457, 603, 666
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Ecl136II	GAGCTC	1 cut(s)	277
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	279
Eco32I	GATATC	1 cut(s)	619
Eco47I	GGWCC	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	277
Eco91I	GGTNACC	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	203
EcoO65I	GGTNACC	1 cut(s)	428
EcoRII	CCWGG	3 cut(s)	385, 516, 679
EcoRV	GATATC	1 cut(s)	619
EcoT38I	GRGCYC	1 cut(s)	279
FaeI	CATG	1 cut(s)	604
FaiI	YATR	5 cut(s)	153, 183, 473, 602, 758
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	1 cut(s)	600
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	1 cut(s)	795
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	795
FspBI	CTAG	1 cut(s)	584
GlaI	GCGC	2 cut(s)	219, 798
GluI	GCNGC	1 cut(s)	795
GsuI	CTGGAG	1 cut(s)	566
HaeIII	GGCC	4 cut(s)	53, 77, 190, 233
HapII	CCGG	1 cut(s)	630
HhaI	GCGC	2 cut(s)	220, 799
Hin1II	CATG	1 cut(s)	604
Hin6I	GCGC	2 cut(s)	218, 797
HinP1I	GCGC	2 cut(s)	218, 797
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	4 cut(s)	448, 565, 595, 702
HpaII	CCGG	1 cut(s)	630
HphI	GGTGA	2 cut(s)	91, 403
Hpy166II	GTNNAC	2 cut(s)	153, 526
Hpy188I	TCNGA	5 cut(s)	73, 141, 314, 351, 383
Hpy188III	TCNNGA	4 cut(s)	31, 292, 569, 601
Hpy8I	GTNNAC	2 cut(s)	153, 526
HpyAV	CCTTC	5 cut(s)	223, 391, 418, 424, 735
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	2 cut(s)	84, 173
HpyCH4V	TGCA	2 cut(s)	264, 760
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	2 cut(s)	70, 420
HpySE526I	ACGT	2 cut(s)	84, 173
Hsp92II	CATG	1 cut(s)	604
HspAI	GCGC	2 cut(s)	218, 797
KflI	GGGWCCC	1 cut(s)	203
KpnI	GGTACC	1 cut(s)	650
Kzo9I	GATC	6 cut(s)	111, 378, 408, 457, 603, 666
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	1 cut(s)	632
Lsp1109I	GCAGC	1 cut(s)	806
LweI	GCATC	1 cut(s)	316
MabI	ACCWGGT	2 cut(s)	385, 516
MaeI	CTAG	1 cut(s)	584
MaeII	ACGT	2 cut(s)	84, 173
MaeIII	GTNAC	1 cut(s)	428
MalI	GATC	6 cut(s)	113, 380, 410, 459, 605, 668
MboI	GATC	6 cut(s)	111, 378, 408, 457, 603, 666
MboII	GAAGA	6 cut(s)	284, 307, 310, 316, 406, 837
MflI	RGATCY	2 cut(s)	111, 457
MhlI	GDGCHC	2 cut(s)	279, 404
MluCI	AATT	5 cut(s)	178, 242, 250, 462, 694
MlyI	GAGTC	1 cut(s)	559
MmeI	TCCRAC	2 cut(s)	21, 371
MroXI	GAANNNNTTC	1 cut(s)	308
MseI	TTAA	2 cut(s)	510, 611
MspI	CCGG	1 cut(s)	630
MspR9I	CCNGG	4 cut(s)	387, 518, 630, 681
MvaI	CCWGG	3 cut(s)	387, 518, 681
MwoI	GCNNNNNNNGC	1 cut(s)	335
NciI	CCSGG	1 cut(s)	630
NdeII	GATC	6 cut(s)	111, 378, 408, 457, 603, 666
NlaIII	CATG	1 cut(s)	604
NlaIV	GGNNCC	4 cut(s)	11, 204, 205, 648
NmeAIII	GCCGAG	1 cut(s)	69
PagI	TCATGA	1 cut(s)	600
PceI	AGGCCT	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	308
PfeI	GAWTC	3 cut(s)	448, 595, 702
PkrI	GCNGC	1 cut(s)	796
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PpuMI	RGGWCCY	1 cut(s)	203
PshBI	ATTAAT	1 cut(s)	510
Psp124BI	GAGCTC	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	203
Psp6I	CCWGG	3 cut(s)	385, 516, 679
PspEI	GGTNACC	1 cut(s)	428
PspGI	CCWGG	3 cut(s)	385, 516, 679
PspN4I	GGNNCC	4 cut(s)	11, 204, 205, 648
PspPI	GGNCC	2 cut(s)	188, 203
PspPPI	RGGWCCY	1 cut(s)	203
PsuI	RGATCY	2 cut(s)	111, 457
RsaI	GTAC	1 cut(s)	648
RsaNI	GTAC	1 cut(s)	647
SacI	GAGCTC	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	510, 611
SatI	GCNGC	1 cut(s)	795
Sau3AI	GATC	6 cut(s)	111, 378, 408, 457, 603, 666
Sau96I	GGNCC	2 cut(s)	188, 203
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	4 cut(s)	387, 518, 630, 681
SduI	GDGCHC	2 cut(s)	279, 404
SexAI	ACCWGGT	2 cut(s)	385, 516
SfaNI	GCATC	1 cut(s)	316
SfcI	CTRYAG	1 cut(s)	124
SinI	GGWCC	1 cut(s)	203
Sse9I	AATT	5 cut(s)	178, 242, 250, 462, 694
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	3 cut(s)	37, 47, 485
SspMI	CTAG	1 cut(s)	584
SstI	GAGCTC	1 cut(s)	279
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	4 cut(s)	385, 516, 628, 679
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	2 cut(s)	87, 176
TaqI	TCGA	2 cut(s)	30, 665
TasI	AATT	5 cut(s)	178, 242, 250, 462, 694
TfiI	GAWTC	3 cut(s)	448, 595, 702
Tru1I	TTAA	2 cut(s)	510, 611
Tru9I	TTAA	2 cut(s)	510, 611
TscAI	CASTG	2 cut(s)	214, 546
TseI	GCWGC	1 cut(s)	794
TspDTI	ATGAA	1 cut(s)	317
TspGWI	ACGGA	1 cut(s)	607
TspRI	CASTG	2 cut(s)	214, 546
VpaK11BI	GGWCC	1 cut(s)	203
VspI	ATTAAT	1 cut(s)	510
XapI	RAATTY	3 cut(s)	242, 250, 694
XmiI	GTMKAC	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	308
XspI	CTAG	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.