AT3G47980

integral membrane HPP family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007927
Physical Location & Seq
Forward (+)
17710160 .. 17712946
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47980.1

Sequence Viewer

Length: 759 bp
ATGGCTTCGCTTCCGGTGAAGCCTCTACCTTCCGGCCACTTACAGCTTCATAGCCGGAATCTTATTATTCCGCCATCAATGGTAACCGTTGGTTTCAAAAGGCATCACTTCTTAGGAGTCTCTTCTTATGGTTTATGTATTGATGAATCTGTAAGGCATATGAGAAGCCTAAGGTCGTCGAGCAATCGTCGGCGAGTAAGTAAAAGCGCCGGCGTGTCTATGCCGGTGGCTTCCTCTGATGATTTTCCAGCGGTTTCTTGGGAGTCTTGGAAGCCGGAAAAGACCACGGTGGCTCCGTCGCTGAGTGACGTCATCTGGCCTGCAGCAGGAGCCTTTGCGGCGATGGCGATAATGGGAAGAATAGATCAAATGCTAAACCCTAAAGGGATCTCAATGTCGGTTGCACCACTTGGTGCTGTCTCTGCCATTCTCTTCACCACTCCTTCTGCTCCTGCTGCTCGGAAATACAATATGTTCACGGCTCAAATAGGTTGTGCAGCCATTGGAGTGTTGGCGTTCTCCGCCTTTGGGCCAAGCTGGCTAGCCCGCAGTACCGCTCTCGCCGCTTCCATCGCGTTCATGGTCATCACTCGTGCCAACCATCCGCCTGCGGCGAGTTTACCACTACTGTTTATAGACGGAGCAAAGTTGCATAAACTGAACTTTTGGTACGCATTATTCCCCGGTGCAGCCGCTTGTATCCTTCTCTGCTTCCTCCAAGCGATCGTGGGTTACTTGAAGGAAAACTTAAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HPP

Protein Analysis

252

Amino Acids

26.97

Weight (kDa)

10.08

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TM_HPP PF04982 98 - 246 3.4e-31 HPP, transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 312
AccBSI CCGCTC 1 cut(s) 557
AccII CGCG 1 cut(s) 575
AclWI GGATC 1 cut(s) 395
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 1 cut(s) 752
AcyI GRCGYC 1 cut(s) 309
AdeI CACNNNGTG 1 cut(s) 413
AfaI GTAC 2 cut(s) 553, 671
AfiI CCNNNNNNNGG 2 cut(s) 326, 528
AgsI TTSAA 2 cut(s) 97, 739
AluBI AGCT 2 cut(s) 46, 537
AluI AGCT 2 cut(s) 46, 537
Alw26I GTCTC 2 cut(s) 124, 424
AlwI GGATC 1 cut(s) 395
AoxI GGCC 3 cut(s) 34, 317, 530
ApeKI GCWGC 4 cut(s) 323, 455, 497, 689
ApoI RAATTY 1 cut(s) 752
AspLEI GCGC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 530
AsuC2I CCSGG 1 cut(s) 684
AsuHPI GGTGA 2 cut(s) 28, 427
AsuNHI GCTAGC 1 cut(s) 541
AxyI CCTNAGG 1 cut(s) 170
BauI CACGAG 1 cut(s) 591
BbvI GCAGC 4 cut(s) 335, 442, 509, 701
BccI CCATC 4 cut(s) 82, 337, 578, 609
BceAI ACGGC 1 cut(s) 495
BciVI GTATCC 1 cut(s) 710
BcnI CCSGG 1 cut(s) 684
BcoDI GTCTC 2 cut(s) 124, 424
BfaI CTAG 1 cut(s) 542
BfmI CTRYAG 1 cut(s) 321
BfoI RGCGCY 1 cut(s) 210
BfuI GTATCC 1 cut(s) 710
BglI GCCNNNNNGGC 2 cut(s) 338, 538
BisI GCNGC 8 cut(s) 324, 339, 456, 498, 564, 612, 690, 693
BlsI GCNGC 8 cut(s) 325, 340, 457, 499, 565, 613, 691, 694
Bme1390I CCNGG 1 cut(s) 684
BmgT120I GGNCC 1 cut(s) 530
BmiI GGNNCC 2 cut(s) 294, 331
BmrFI CCNGG 1 cut(s) 684
BmsI GCATC 1 cut(s) 112
BmtI GCTAGC 1 cut(s) 545
BpuMI CCSGG 1 cut(s) 684
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 2 cut(s) 285, 682
BsaWI WCCGGW 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 528
Bse118I RCCGGY 2 cut(s) 209, 223
Bse21I CCTNAGG 1 cut(s) 170
BseDI CCNNGG 2 cut(s) 285, 682
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 2 cut(s) 326, 528
BseMII CTCAG 1 cut(s) 293
BseXI GCAGC 4 cut(s) 335, 442, 509, 701
BsgI GTGCAG 2 cut(s) 516, 708
Bsh1236I CGCG 1 cut(s) 575
Bsh1285I CGRYCG 1 cut(s) 726
BshFI GGCC 3 cut(s) 36, 319, 532
BsiEI CGRYCG 1 cut(s) 726
BsiSI CCGG 7 cut(s) 14, 33, 55, 210, 224, 275, 684
BslI CCNNNNNNNGG 2 cut(s) 326, 528
BsmAI GTCTC 2 cut(s) 124, 424
BsnI GGCC 3 cut(s) 36, 319, 532
Bsp143I GATC 3 cut(s) 364, 387, 723
BspANI GGCC 3 cut(s) 36, 319, 532
BspCNI CTCAG 1 cut(s) 294
BspFNI CGCG 1 cut(s) 575
BspLI GGNNCC 2 cut(s) 294, 331
BspMAI CTGCAG 1 cut(s) 325
BspOI GCTAGC 1 cut(s) 545
BspPI GGATC 1 cut(s) 395
BsrBI CCGCTC 1 cut(s) 557
BsrFI RCCGGY 2 cut(s) 209, 223
BssAI RCCGGY 2 cut(s) 209, 223
BssECI CCNNGG 2 cut(s) 285, 682
BssMI GATC 3 cut(s) 364, 387, 723
BssNI GRCGYC 1 cut(s) 309
BssSI CACGAG 1 cut(s) 591
Bst2BI CACGAG 1 cut(s) 591
Bst4CI ACNGT 3 cut(s) 88, 289, 630
Bst6I CTCTTC 2 cut(s) 127, 437
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 6 cut(s) 211, 321, 539, 543, 547, 609
BstDEI CTNAG 3 cut(s) 112, 170, 302
BstDSI CCRYGG 1 cut(s) 285
BstEII GGTNACC 1 cut(s) 82
BstENI CCTNNNNNAGG 1 cut(s) 324
BstF5I GGATG 1 cut(s) 601
BstFNI CGCG 1 cut(s) 575
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 3 cut(s) 367, 390, 726
BstMAI GTCTC 2 cut(s) 124, 424
BstMBI GATC 3 cut(s) 364, 387, 723
BstMCI CGRYCG 1 cut(s) 726
BstMWI GCNNNNNNNGC 9 cut(s) 329, 338, 344, 422, 455, 521, 538, 563, 572
BstPI GGTNACC 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 682
BstSFI CTRYAG 1 cut(s) 321
BstUI CGCG 1 cut(s) 575
BstV1I GCAGC 4 cut(s) 335, 442, 509, 701
BstX2I RGATCY 1 cut(s) 387
BstYI RGATCY 1 cut(s) 387
Bsu36I CCTNAGG 1 cut(s) 170
BsuI GTATCC 1 cut(s) 710
BsuRI GGCC 3 cut(s) 36, 319, 532
BtgI CCRYGG 1 cut(s) 285
BtgZI GCGATG 2 cut(s) 356, 556
BtsCI GGATG 1 cut(s) 601
Cac8I GCNNGC 6 cut(s) 211, 321, 539, 543, 547, 609
CfoI GCGC 1 cut(s) 209
Cfr10I RCCGGY 2 cut(s) 209, 223
Cfr13I GGNCC 1 cut(s) 530
Csp6I GTAC 2 cut(s) 552, 670
CviAII CATG 1 cut(s) 580
CviQI GTAC 2 cut(s) 552, 670
DdeI CTNAG 3 cut(s) 112, 170, 302
DpnI GATC 3 cut(s) 366, 389, 725
DpnII GATC 3 cut(s) 364, 387, 723
DraIII CACNNNGTG 1 cut(s) 413
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 127, 437
EarI CTCTTC 2 cut(s) 127, 437
EciI GGCGGA 3 cut(s) 60, 511, 594
Eco81I CCTNAGG 1 cut(s) 170
Eco91I GGTNACC 1 cut(s) 82
EcoNI CCTNNNNNAGG 1 cut(s) 324
EcoO65I GGTNACC 1 cut(s) 82
FaeI CATG 1 cut(s) 583
FalI AAGNNNNNCTT 1 cut(s) 731
FatI CATG 1 cut(s) 579
FauI CCCGC 1 cut(s) 554
FauNDI CATATG 1 cut(s) 159
Fnu4HI GCNGC 8 cut(s) 324, 339, 456, 498, 564, 612, 690, 693
FokI GGATG 1 cut(s) 588
Fsp4HI GCNGC 8 cut(s) 324, 339, 456, 498, 564, 612, 690, 693
FspBI CTAG 1 cut(s) 542
GlaI GCGC 1 cut(s) 208
GluI GCNGC 8 cut(s) 324, 339, 456, 498, 564, 612, 690, 693
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 3 cut(s) 36, 319, 532
HapII CCGG 7 cut(s) 14, 33, 55, 210, 224, 275, 684
HhaI GCGC 1 cut(s) 209
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 1 cut(s) 583
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HinfI GANTC 4 cut(s) 58, 117, 146, 263
HpaII CCGG 7 cut(s) 14, 33, 55, 210, 224, 275, 684
HphI GGTGA 2 cut(s) 28, 427
Hpy166II GTNNAC 2 cut(s) 477, 620
Hpy188I TCNGA 2 cut(s) 238, 462
Hpy8I GTNNAC 2 cut(s) 477, 620
Hpy99I CGWCG 3 cut(s) 181, 192, 301
HpyAV CCTTC 4 cut(s) 39, 453, 713, 733
HpyCH4III ACNGT 3 cut(s) 88, 289, 630
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 5 cut(s) 323, 404, 497, 652, 689
HpyF10VI GCNNNNNNNGC 9 cut(s) 329, 338, 344, 422, 455, 521, 538, 563, 572
HpyF3I CTNAG 3 cut(s) 112, 170, 302
HpySE526I ACGT 1 cut(s) 309
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 1 cut(s) 583
HspAI GCGC 1 cut(s) 207
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
Kzo9I GATC 3 cut(s) 364, 387, 723
LmnI GCTCC 4 cut(s) 298, 329, 454, 641
Lsp1109I GCAGC 4 cut(s) 335, 442, 509, 701
LweI GCATC 1 cut(s) 112
MaeI CTAG 1 cut(s) 542
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 3 cut(s) 82, 305, 731
MalI GATC 3 cut(s) 366, 389, 725
MbiI CCGCTC 1 cut(s) 557
MboI GATC 3 cut(s) 364, 387, 723
MboII GAAGA 3 cut(s) 114, 369, 424
MflI RGATCY 1 cut(s) 387
MluCI AATT 1 cut(s) 752
MlyI GAGTC 2 cut(s) 126, 272
MnlI CCTC 3 cut(s) 33, 244, 725
MreI CGCCGGCG 1 cut(s) 209
MroNI GCCGGC 1 cut(s) 209
MseI TTAA 1 cut(s) 749
MslI CAYNNNNRTG 1 cut(s) 506
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 7 cut(s) 14, 33, 55, 210, 224, 275, 684
MspR9I CCNGG 1 cut(s) 684
MvnI CGCG 1 cut(s) 575
MwoI GCNNNNNNNGC 9 cut(s) 329, 338, 344, 422, 455, 521, 538, 563, 572
NaeI GCCGGC 1 cut(s) 211
NciI CCSGG 1 cut(s) 684
NdeI CATATG 1 cut(s) 159
NdeII GATC 3 cut(s) 364, 387, 723
NgoMIV GCCGGC 1 cut(s) 209
NheI GCTAGC 1 cut(s) 541
NlaIII CATG 1 cut(s) 583
NlaIV GGNNCC 2 cut(s) 294, 331
NmuCI GTSAC 1 cut(s) 305
PcsI WCGNNNNNNNCGW 1 cut(s) 293
PdiI GCCGGC 1 cut(s) 211
PfeI GAWTC 2 cut(s) 58, 146
PkrI GCNGC 8 cut(s) 325, 340, 457, 499, 565, 613, 691, 694
Ple19I CGATCG 1 cut(s) 726
PleI GAGTC 2 cut(s) 125, 271
PpsI GAGTC 2 cut(s) 125, 271
PspEI GGTNACC 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 294, 331
PspPI GGNCC 1 cut(s) 530
PsrI GAACNNNNNNTAC 2 cut(s) 653, 685
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 1 cut(s) 387
PvuI CGATCG 1 cut(s) 726
RsaI GTAC 2 cut(s) 553, 671
RsaNI GTAC 2 cut(s) 552, 670
RseI CAYNNNNRTG 1 cut(s) 506
SaqAI TTAA 1 cut(s) 749
SatI GCNGC 8 cut(s) 324, 339, 456, 498, 564, 612, 690, 693
Sau3AI GATC 3 cut(s) 364, 387, 723
Sau96I GGNCC 1 cut(s) 530
SchI GAGTC 2 cut(s) 126, 272
ScrFI CCNGG 1 cut(s) 684
SetI ASST 6 cut(s) 31, 48, 176, 312, 493, 539
SfaNI GCATC 1 cut(s) 112
SfcI CTRYAG 1 cut(s) 321
SgrAI CRCCGGYG 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 506
Sse9I AATT 1 cut(s) 752
SspMI CTAG 1 cut(s) 542
StyD4I CCNGG 1 cut(s) 682
TaaI ACNGT 3 cut(s) 88, 289, 630
TaiI ACGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 179
TasI AATT 1 cut(s) 752
TauI GCSGC 4 cut(s) 341, 566, 614, 695
TfiI GAWTC 2 cut(s) 58, 146
Tru1I TTAA 1 cut(s) 749
Tru9I TTAA 1 cut(s) 749
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 4 cut(s) 323, 455, 497, 689
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 3 cut(s) 38, 159, 568
TspGWI ACGGA 2 cut(s) 285, 654
XagI CCTNNNNNAGG 1 cut(s) 324
XapI RAATTY 1 cut(s) 752
XcmI CCANNNNNNNNNTGG 3 cut(s) 255, 508, 577
XspI CTAG 1 cut(s) 542
ZraI GACGTC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.