Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005690.1

Orthogroup ID

OG0007927

Physical Location & Seq

Genomic Coordinates Forward (+)

54981 .. 56656

Gene Structure 1676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005690.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgggcatgcaaatgaggattattagctaccaccaccatctccttcatcacaatgcttcttctgcaactccggcattctcaatgtctttacgccctttttcttcttcttcgtcttcaattttattccgatttcacaagaacctcgcgggccgaagcgtaatcagaacgacgaaaggaagaagcagttatcacaactatgggattgtggcctcaagcaacgtgggtgcgccgctttgggaggcttggaaacctgacaaggcttcttctgctccttccctcagcgatgttctttggccttctgcaggggcatttacagcaatggcaatattgggaagactagatgagatgctaacaccaaaaggagtttcaatgacaattgcacctttaggagctgtttgtgctgtcctctttgccactcccacctctccaggtgctcggaagtacaacatgttcatcgcacaaattggttgtgcagccattggtgtcctagcattttctgtattagggccagggtggcttgcccggagctttgccctcgctgcttccattgccttcatgatcttcacacgctccactcatccgccagctgcgagcttgccaatactcttcattgacggagcaaagttgcatcacctgaattattggtatgctttcttccccggcgctgccggatgcatccttctttgcttgattcaagtgatggtgttacacttgaaggacaacttcaaattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HPP

Protein Analysis

244

Amino Acids

26.31

Weight (kDa)

9.98

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47980 AT5G62720 AT5G62720
fragaria_vesca	FvH4_5g15530 FvH4_5g15530
malus_domestica	MD06G1187500.v1.1 MD14G1193900.v1.1
prunus_persica	Prupe.5G185800_v2.0.a1
pyrus_communis	pycom14g16130
rosa_chinensis	RchiOBHm_Chr7g0180561
rosa_laevigata	RLG00000005255
rosa_multiflora	Rmu_sc0005690.1_g000016
rosa_roxburghii	Rroxscaffold_3G00272790
rosa_rugosa	Rorug06G0433500 Rorug06G0433600 Rorug06G0433600 Rorug06G0433700 Rorug06G0433700 Rorug06G0433800
rosa_samantha	Rh7AG035100 Rh7BG035000 Rh7CG036600 Rh7DG035300
rosa_wichuraiana	Rw7G002880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	146
AciI	CCGC	3 cut(s)	146, 230, 581
AcsI	RAATTY	1 cut(s)	728
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	1 cut(s)	302
AflIII	ACRYGT	1 cut(s)	447
AgsI	TTSAA	5 cut(s)	117, 369, 695, 715, 727
AjnI	CCWGG	2 cut(s)	427, 508
AjuI	GAANNNNNNNTTGG	2 cut(s)	349, 381
AluBI	AGCT	5 cut(s)	27, 392, 528, 587, 594
AluI	AGCT	5 cut(s)	27, 392, 528, 587, 594
Alw21I	GWGCWC	1 cut(s)	436
AoxI	GGCC	4 cut(s)	148, 207, 293, 506
ApeKI	GCWGC	4 cut(s)	473, 539, 587, 665
ApoI	RAATTY	1 cut(s)	728
AspLEI	GCGC	2 cut(s)	229, 665
AspS9I	GGNCC	2 cut(s)	148, 506
AsuC2I	CCSGG	2 cut(s)	523, 660
AsuHPI	GGTGA	1 cut(s)	623
BarI	GAAGNNNNNNTAC	2 cut(s)	638, 670
BbsI	GAAGAC	2 cut(s)	105, 340
Bbv12I	GWGCWC	1 cut(s)	436
BbvCI	CCTCAGC	1 cut(s)	278
BbvI	GCAGC	4 cut(s)	485, 526, 574, 652
BccI	CCATC	2 cut(s)	45, 694
BciT130I	CCWGG	2 cut(s)	429, 510
BcnI	CCSGG	2 cut(s)	523, 660
BfaI	CTAG	2 cut(s)	338, 488
BfmI	CTRYAG	1 cut(s)	300
BfoI	RGCGCY	1 cut(s)	666
BglI	GCCNNNNNGGC	1 cut(s)	514
BisI	GCNGC	5 cut(s)	230, 474, 540, 588, 666
BlsI	GCNGC	5 cut(s)	231, 475, 541, 589, 667
Bme1390I	CCNGG	4 cut(s)	429, 510, 523, 660
BmgT120I	GGNCC	2 cut(s)	148, 506
BmrFI	CCNGG	4 cut(s)	429, 510, 523, 660
BmsI	GCATC	4 cut(s)	336, 637, 662, 684
BpiI	GAAGAC	2 cut(s)	105, 340
BpmI	CTGGAG	1 cut(s)	411
Bpu10I	CCTNAGC	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	196
BpuMI	CCSGG	2 cut(s)	523, 660
BsaJI	CCNNGG	2 cut(s)	509, 658
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse3DI	GCAATG	2 cut(s)	324, 546
BseBI	CCWGG	2 cut(s)	429, 510
BseDI	CCNNGG	2 cut(s)	509, 658
BseGI	GGATG	3 cut(s)	577, 675, 677
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMI	GCAATG	2 cut(s)	324, 546
BseMII	CTCAG	1 cut(s)	292
BseXI	GCAGC	4 cut(s)	485, 526, 574, 652
BsgI	GTGCAG	1 cut(s)	492
Bsh1236I	CGCG	1 cut(s)	146
BshFI	GGCC	4 cut(s)	150, 209, 295, 508
BsiHKAI	GWGCWC	1 cut(s)	436
BsiSI	CCGG	4 cut(s)	71, 523, 660, 669
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	4 cut(s)	150, 209, 295, 508
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	1 cut(s)	558
BspACI	CCGC	3 cut(s)	146, 230, 581
BspANI	GGCC	4 cut(s)	150, 209, 295, 508
BspCNI	CTCAG	1 cut(s)	291
BspFNI	CGCG	1 cut(s)	146
BspHI	TCATGA	1 cut(s)	555
BspMAI	CTGCAG	1 cut(s)	304
BsrDI	GCAATG	2 cut(s)	324, 546
BssECI	CCNNGG	2 cut(s)	509, 658
BssMI	GATC	1 cut(s)	558
Bst2UI	CCWGG	2 cut(s)	429, 510
Bst6I	CTCTTC	1 cut(s)	611
BstC8I	GCNNGC	6 cut(s)	8, 148, 519, 585, 592, 596
BstDEI	CTNAG	1 cut(s)	278
BstENI	CCTNNNNNAGG	1 cut(s)	300
BstF5I	GGATG	3 cut(s)	577, 675, 677
BstFNI	CGCG	1 cut(s)	146
BstH2I	RGCGCY	1 cut(s)	666
BstHHI	GCGC	2 cut(s)	229, 665
BstKTI	GATC	1 cut(s)	561
BstMBI	GATC	1 cut(s)	558
BstMWI	GCNNNNNNNGC	8 cut(s)	62, 71, 266, 314, 398, 514, 539, 548
BstNI	CCWGG	2 cut(s)	429, 510
BstNSI	RCATGY	2 cut(s)	10, 451
BstSCI	CCNGG	4 cut(s)	427, 508, 521, 658
BstSFI	CTRYAG	1 cut(s)	300
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	4 cut(s)	485, 526, 574, 652
BstV2I	GAAGAC	2 cut(s)	105, 340
BsuRI	GGCC	4 cut(s)	150, 209, 295, 508
BtgZI	GCGATG	2 cut(s)	297, 439
BtsCI	GGATG	3 cut(s)	577, 675, 677
Cac8I	GCNNGC	6 cut(s)	8, 148, 519, 585, 592, 596
CciI	TCATGA	1 cut(s)	555
CfoI	GCGC	2 cut(s)	229, 665
Cfr13I	GGNCC	2 cut(s)	148, 506
Csp6I	GTAC	1 cut(s)	442
CspCI	CAANNNNNGTGG	2 cut(s)	201, 236
CviAII	CATG	3 cut(s)	7, 448, 556
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	1 cut(s)	560
DpnII	GATC	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	611
EarI	CTCTTC	1 cut(s)	611
EciI	GGCGGA	1 cut(s)	570
EcoNI	CCTNNNNNAGG	1 cut(s)	300
EcoRII	CCWGG	2 cut(s)	427, 508
EcoT22I	ATGCAT	1 cut(s)	677
FaeI	CATG	3 cut(s)	10, 451, 559
FaiI	YATR	5 cut(s)	8, 198, 449, 557, 648
FalI	AAGNNNNNCTT	1 cut(s)	707
FatI	CATG	3 cut(s)	6, 447, 555
FauI	CCCGC	1 cut(s)	139
Fnu4HI	GCNGC	5 cut(s)	230, 474, 540, 588, 666
FokI	GGATG	3 cut(s)	564, 662, 684
Fsp4HI	GCNGC	5 cut(s)	230, 474, 540, 588, 666
FspBI	CTAG	2 cut(s)	338, 488
GlaI	GCGC	2 cut(s)	228, 664
GluI	GCNGC	5 cut(s)	230, 474, 540, 588, 666
GsuI	CTGGAG	1 cut(s)	411
HaeII	RGCGCY	1 cut(s)	666
HaeIII	GGCC	4 cut(s)	150, 209, 295, 508
HapII	CCGG	4 cut(s)	71, 523, 660, 669
HhaI	GCGC	2 cut(s)	229, 665
Hin1II	CATG	3 cut(s)	10, 451, 559
Hin6I	GCGC	2 cut(s)	227, 663
HinP1I	GCGC	2 cut(s)	227, 663
HinfI	GANTC	1 cut(s)	691
HpaII	CCGG	4 cut(s)	71, 523, 660, 669
HphI	GGTGA	1 cut(s)	623
Hpy188I	TCNGA	4 cut(s)	128, 164, 438, 734
Hpy188III	TCNNGA	1 cut(s)	556
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	6 cut(s)	53, 282, 306, 562, 689, 709
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	7 cut(s)	10, 65, 302, 380, 473, 628, 675
HpyF10VI	GCNNNNNNNGC	8 cut(s)	62, 71, 266, 314, 398, 514, 539, 548
HpyF3I	CTNAG	1 cut(s)	278
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	10, 451, 559
HspAI	GCGC	2 cut(s)	227, 663
Kzo9I	GATC	1 cut(s)	558
LmnI	GCTCC	5 cut(s)	274, 389, 525, 575, 617
Lsp1109I	GCAGC	4 cut(s)	485, 526, 574, 652
LweI	GCATC	4 cut(s)	336, 637, 662, 684
MaeI	CTAG	2 cut(s)	338, 488
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	705
MalI	GATC	1 cut(s)	560
MboI	GATC	1 cut(s)	558
MfeI	CAATTG	1 cut(s)	375
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	5 cut(s)	117, 375, 462, 637, 728
MnlI	CCTC	8 cut(s)	9, 152, 220, 232, 287, 416, 433, 545
Mph1103I	ATGCAT	1 cut(s)	677
MslI	CAYNNNNRTG	3 cut(s)	11, 51, 195
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	4 cut(s)	71, 523, 660, 669
MspR9I	CCNGG	4 cut(s)	429, 510, 523, 660
MunI	CAATTG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	74
MvaI	CCWGG	2 cut(s)	429, 510
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	8 cut(s)	62, 71, 266, 314, 398, 514, 539, 548
NciI	CCSGG	2 cut(s)	523, 660
NdeII	GATC	1 cut(s)	558
NlaIII	CATG	3 cut(s)	10, 451, 559
NsiI	ATGCAT	1 cut(s)	677
NspI	RCATGY	2 cut(s)	10, 451
PaeI	GCATGC	1 cut(s)	10
PagI	TCATGA	1 cut(s)	555
PciI	ACATGT	1 cut(s)	447
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	691
PkrI	GCNGC	5 cut(s)	231, 475, 541, 589, 667
PscI	ACATGT	1 cut(s)	447
Psp6I	CCWGG	2 cut(s)	427, 508
PspGI	CCWGG	2 cut(s)	427, 508
PspPI	GGNCC	2 cut(s)	148, 506
PsrI	GAACNNNNNNTAC	2 cut(s)	434, 466
PstI	CTGCAG	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	3 cut(s)	11, 51, 195
SatI	GCNGC	5 cut(s)	230, 474, 540, 588, 666
Sau3AI	GATC	1 cut(s)	558
Sau96I	GGNCC	2 cut(s)	148, 506
ScrFI	CCNGG	4 cut(s)	429, 510, 523, 660
SduI	GDGCHC	1 cut(s)	436
SfaNI	GCATC	4 cut(s)	336, 637, 662, 684
SfcI	CTRYAG	1 cut(s)	300
SmiMI	CAYNNNNRTG	3 cut(s)	11, 51, 195
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
SphI	GCATGC	1 cut(s)	10
Sse9I	AATT	5 cut(s)	117, 375, 462, 637, 728
SsiI	CCGC	3 cut(s)	146, 230, 581
SspI	AATATT	1 cut(s)	327
SspMI	CTAG	2 cut(s)	338, 488
StyD4I	CCNGG	4 cut(s)	427, 508, 521, 658
TaiI	ACGT	1 cut(s)	222
TasI	AATT	5 cut(s)	117, 375, 462, 637, 728
TatI	WGTACW	1 cut(s)	441
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	691
TseI	GCWGC	4 cut(s)	473, 539, 587, 665
TspDTI	ATGAA	4 cut(s)	35, 442, 544, 598
TspGWI	ACGGA	1 cut(s)	630
XagI	CCTNNNNNAGG	1 cut(s)	300
XapI	RAATTY	1 cut(s)	728
XceI	RCATGY	2 cut(s)	10, 451
XspI	CTAG	2 cut(s)	338, 488
Zsp2I	ATGCAT	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.