Rroxscaffold_3G00272790

HPP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007927
Physical Location & Seq
Reverse (-)
64758305 .. 64760647
2343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00272790.1

Sequence Viewer

Length: 636 bp
ATGGGCATGCAAATGAGGATTATTAGCTACCACCACGATCTCCTTCATCACAATGCTTCTTCTGCAACTCCGGCATTCTCTACGTCTTTACGCCCTTTTTCTTCTTCTTCAATTTTATTCCGATTTCACAAGAACCTCGCCGGCCGAAGCATAATTAGAAAGACGAAAGGAAGAAGCAGTTATCATAACTATGGGATTGTGGCCTCAAGCAACGTGGGTGCGCCGCTTTGGGAGGCTTGGAAACCTGACAAGGCTTCTTCCGCTCCTTCCCTCAGCGATGTTCTTTGGCCTTCTGCAGGGGCATTTGCAGCAATGGCGATATTGGGAAGAATAGATGAGATGCTAACACCAAAAGGAGTTTCAATGACAATTGCACCTTTAGGAGCTGTTTGTGCTGTCCTCTTTGCCACTCCCACCTCTCCAGGTGCTCGGAAGTACAACATGTTCATGGCCCAAATTGGTTGTGCAGTCATTGGTGTCCTAGCATTTTCTGTATTAGGGCCAGGGTGGCTTGCCCGGAGCTTTGCCCTCGCTGCTTCCATTGCCTTCATGATCTTCACACGCTCCACTCATCCGCCAGTGCAGCTGCGAGCTTGCCAATACTCTTCATTGACGGAGCAAAGTTGCATCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HPP

Protein Analysis

211

Amino Acids

22.64

Weight (kDa)

10.03

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TM_HPP PF04982 88 - 193 8e-24 HPP, transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 263
AciI CCGC 3 cut(s) 224, 261, 575
AcoI YGGCCR 1 cut(s) 142
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 441
AgsI TTSAA 2 cut(s) 111, 363
AjnI CCWGG 2 cut(s) 421, 502
AjuI GAANNNNNNNTTGG 2 cut(s) 343, 375
AluBI AGCT 5 cut(s) 27, 386, 522, 586, 593
AluI AGCT 5 cut(s) 27, 386, 522, 586, 593
Alw21I GWGCWC 1 cut(s) 430
AoxI GGCC 5 cut(s) 142, 201, 287, 450, 500
ApeKI GCWGC 4 cut(s) 308, 533, 583, 586
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 2 cut(s) 451, 500
AsuC2I CCSGG 1 cut(s) 517
AsuHPI GGTGA 1 cut(s) 622
Bbv12I GWGCWC 1 cut(s) 430
BbvCI CCTCAGC 1 cut(s) 272
BbvI GCAGC 4 cut(s) 320, 520, 573, 595
BciT130I CCWGG 2 cut(s) 423, 504
BcnI CCSGG 1 cut(s) 517
BfaI CTAG 1 cut(s) 482
BfmI CTRYAG 1 cut(s) 294
BglI GCCNNNNNGGC 1 cut(s) 508
BisI GCNGC 5 cut(s) 224, 309, 534, 584, 587
BlsI GCNGC 5 cut(s) 225, 310, 535, 585, 588
Bme1390I CCNGG 3 cut(s) 423, 504, 517
BmgT120I GGNCC 2 cut(s) 451, 500
BmrFI CCNGG 3 cut(s) 423, 504, 517
BmsI GCATC 1 cut(s) 330
BpmI CTGGAG 1 cut(s) 405
Bpu10I CCTNAGC 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 190
BpuMI CCSGG 1 cut(s) 517
BsaJI CCNNGG 1 cut(s) 503
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 578
Bse3DI GCAATG 2 cut(s) 318, 540
BseBI CCWGG 2 cut(s) 423, 504
BseDI CCNNGG 1 cut(s) 503
BseGI GGATG 1 cut(s) 571
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMI GCAATG 2 cut(s) 318, 540
BseMII CTCAG 1 cut(s) 286
BseNI ACTGG 1 cut(s) 578
BseX3I CGGCCG 1 cut(s) 142
BseXI GCAGC 4 cut(s) 320, 520, 573, 595
BsgI GTGCAG 2 cut(s) 486, 602
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 5 cut(s) 144, 203, 289, 452, 502
BsiEI CGRYCG 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 430
BsiSI CCGG 3 cut(s) 71, 141, 517
BslI CCNNNNNNNGG 1 cut(s) 296
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 5 cut(s) 144, 203, 289, 452, 502
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 2 cut(s) 37, 552
BspACI CCGC 3 cut(s) 224, 261, 575
BspANI GGCC 5 cut(s) 144, 203, 289, 452, 502
BspCNI CTCAG 1 cut(s) 285
BspHI TCATGA 1 cut(s) 549
BspMAI CTGCAG 1 cut(s) 298
BsrBI CCGCTC 1 cut(s) 263
BsrDI GCAATG 2 cut(s) 318, 540
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 1 cut(s) 578
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 503
BssMI GATC 2 cut(s) 37, 552
Bst2UI CCWGG 2 cut(s) 423, 504
Bst6I CTCTTC 1 cut(s) 610
BstC8I GCNNGC 5 cut(s) 8, 142, 513, 591, 595
BstDEI CTNAG 1 cut(s) 272
BstENI CCTNNNNNAGG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 571
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 2 cut(s) 40, 555
BstMBI GATC 2 cut(s) 37, 552
BstMCI CGRYCG 1 cut(s) 145
BstNI CCWGG 2 cut(s) 423, 504
BstNSI RCATGY 2 cut(s) 10, 445
BstSCI CCNGG 3 cut(s) 421, 502, 515
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 4 cut(s) 320, 520, 573, 595
BstZI CGGCCG 1 cut(s) 142
BsuRI GGCC 5 cut(s) 144, 203, 289, 452, 502
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 1 cut(s) 571
BtsIMutI CAGTG 1 cut(s) 585
Cac8I GCNNGC 5 cut(s) 8, 142, 513, 591, 595
CciI TCATGA 1 cut(s) 549
CfoI GCGC 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 2 cut(s) 451, 500
Csp6I GTAC 1 cut(s) 436
CspCI CAANNNNNGTGG 2 cut(s) 195, 230
CviAII CATG 4 cut(s) 7, 442, 448, 550
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 1 cut(s) 272
DpnI GATC 2 cut(s) 39, 554
DpnII GATC 2 cut(s) 37, 552
EaeI YGGCCR 1 cut(s) 142
EagI CGGCCG 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 610
EarI CTCTTC 1 cut(s) 610
EciI GGCGGA 1 cut(s) 564
EclXI CGGCCG 1 cut(s) 142
Eco52I CGGCCG 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 294
EcoRII CCWGG 2 cut(s) 421, 502
FaeI CATG 4 cut(s) 10, 445, 451, 553
FaiI YATR 7 cut(s) 8, 152, 186, 192, 443, 449, 551
FatI CATG 4 cut(s) 6, 441, 447, 549
Fnu4HI GCNGC 5 cut(s) 224, 309, 534, 584, 587
FokI GGATG 1 cut(s) 558
Fsp4HI GCNGC 5 cut(s) 224, 309, 534, 584, 587
FspBI CTAG 1 cut(s) 482
GlaI GCGC 1 cut(s) 222
GluI GCNGC 5 cut(s) 224, 309, 534, 584, 587
GsuI CTGGAG 1 cut(s) 405
HaeIII GGCC 5 cut(s) 144, 203, 289, 452, 502
HapII CCGG 3 cut(s) 71, 141, 517
HhaI GCGC 1 cut(s) 223
Hin1II CATG 4 cut(s) 10, 445, 451, 553
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HpaII CCGG 3 cut(s) 71, 141, 517
HphI GGTGA 1 cut(s) 622
Hpy188I TCNGA 2 cut(s) 122, 432
Hpy188III TCNNGA 1 cut(s) 550
HpyAV CCTTC 4 cut(s) 53, 276, 300, 556
HpyCH4IV ACGT 2 cut(s) 83, 213
HpyCH4V TGCA 8 cut(s) 10, 65, 296, 308, 374, 467, 583, 627
HpyF3I CTNAG 1 cut(s) 272
HpySE526I ACGT 2 cut(s) 83, 213
Hsp92II CATG 4 cut(s) 10, 445, 451, 553
HspAI GCGC 1 cut(s) 221
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Kzo9I GATC 2 cut(s) 37, 552
LmnI GCTCC 5 cut(s) 268, 383, 519, 569, 616
Lsp1109I GCAGC 4 cut(s) 320, 520, 573, 595
LweI GCATC 1 cut(s) 330
MaeI CTAG 1 cut(s) 482
MaeII ACGT 2 cut(s) 83, 213
MalI GATC 2 cut(s) 39, 554
MbiI CCGCTC 1 cut(s) 263
MboI GATC 2 cut(s) 37, 552
MboII GAAGA 9 cut(s) 51, 93, 96, 99, 183, 249, 339, 547, 597
MfeI CAATTG 1 cut(s) 369
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 4 cut(s) 111, 153, 369, 456
MnlI CCTC 8 cut(s) 9, 146, 214, 226, 281, 410, 427, 539
MroNI GCCGGC 1 cut(s) 140
MslI CAYNNNNRTG 4 cut(s) 11, 51, 189, 446
MspA1I CMGCKG 1 cut(s) 586
MspI CCGG 3 cut(s) 71, 141, 517
MspR9I CCNGG 3 cut(s) 423, 504, 517
MunI CAATTG 1 cut(s) 369
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 2 cut(s) 423, 504
NaeI GCCGGC 1 cut(s) 142
NciI CCSGG 1 cut(s) 517
NdeII GATC 2 cut(s) 37, 552
NgoMIV GCCGGC 1 cut(s) 140
NlaIII CATG 4 cut(s) 10, 445, 451, 553
NspI RCATGY 2 cut(s) 10, 445
PaeI GCATGC 1 cut(s) 10
PagI TCATGA 1 cut(s) 549
PciI ACATGT 1 cut(s) 441
PctI GAATGC 1 cut(s) 74
PdiI GCCGGC 1 cut(s) 142
PkrI GCNGC 5 cut(s) 225, 310, 535, 585, 588
PscI ACATGT 1 cut(s) 441
Psp6I CCWGG 2 cut(s) 421, 502
PspGI CCWGG 2 cut(s) 421, 502
PspPI GGNCC 2 cut(s) 451, 500
PsrI GAACNNNNNNTAC 2 cut(s) 428, 460
PstI CTGCAG 1 cut(s) 298
PvuII CAGCTG 1 cut(s) 586
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 4 cut(s) 11, 51, 189, 446
SatI GCNGC 5 cut(s) 224, 309, 534, 584, 587
Sau3AI GATC 2 cut(s) 37, 552
Sau96I GGNCC 2 cut(s) 451, 500
ScrFI CCNGG 3 cut(s) 423, 504, 517
SduI GDGCHC 1 cut(s) 430
SfaNI GCATC 1 cut(s) 330
SfcI CTRYAG 1 cut(s) 294
SmiMI CAYNNNNRTG 4 cut(s) 11, 51, 189, 446
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
SphI GCATGC 1 cut(s) 10
Sse9I AATT 4 cut(s) 111, 153, 369, 456
SsiI CCGC 3 cut(s) 224, 261, 575
SspMI CTAG 1 cut(s) 482
StyD4I CCNGG 3 cut(s) 421, 502, 515
TaiI ACGT 2 cut(s) 86, 216
TasI AATT 4 cut(s) 111, 153, 369, 456
TatI WGTACW 1 cut(s) 435
TauI GCSGC 1 cut(s) 226
TscAI CASTG 1 cut(s) 585
TseI GCWGC 4 cut(s) 308, 533, 583, 586
TspDTI ATGAA 4 cut(s) 35, 436, 538, 597
TspGWI ACGGA 1 cut(s) 629
TspRI CASTG 1 cut(s) 585
XagI CCTNNNNNAGG 1 cut(s) 294
XceI RCATGY 2 cut(s) 10, 445
XspI CTAG 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.