Rh7BG035000

HPP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0007927
Physical Location & Seq
Forward (+)
2302155 .. 2304652
2498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG035000.1

Sequence Viewer

Length: 804 bp
ATGGGCATGCAAATGAGGATTATTAGCTACCACCACCATCTCCTTCATCACAACGCTTCTTCTGCAACTCCGGCATTCTCAATGTCTTTACGCCCTTTTTCTTCTTCTTCAATTTTATTCCGATTTCACAAGAACCTCGCCGGCCGAAGCTTAATCAGAACGACGAAAGGAAGAAGTAATTATCATAACTATGGGATTGTGGCCTCAAGCAACGTGGGTGCGCCGCTTTGGGAGGCTTGGAAACCTGACAAGGCTTCTTCTGCTCCTTCCCTCAGCGATGTTCTTTGGCCTTCTGCAGGGGCATTTACAGCAATGGCGATATTGGGAAGAATAGATGAGATGCTAACACCAAAAGGAGTTTCAATGACAATTGCACCTTTAGGAGCTGTTTGTGCTGTCCTCTTTGCCACTCCCACCTCTCCAGGTGCTCGGAAGTACAACATGTTCATGGCACAAATTGGTTGTGCAGCCATTGGTGTCCTAGCACTTTCTGTATTAGGGCCGGGGTGGCTTGCCCGGAGCTTTGCCCTCGCTGCTTCCATTGCCTTCATGATCTTCACACGCTCCACTCATCCGCCAGGTAATACCTCAAACGTCGTCGTTTGTGCTAACTTTCTCCGTTTCTCGGTTCTCATTATGCGATCAATTAGTGCAGCTGCGAGCTTGCCAATACTCTTCATTGACGGAGCAAAGTTGCATCACCTGAATTATTGGTATGCTTTCTTCCCCGGCGCTGCCGGATGCATCCTTCTTTGCTTGATTCAAGTGATGGTGTTACACTTGAAGGACAACTTCAAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HPP

Protein Analysis

267

Amino Acids

28.84

Weight (kDa)

10.09

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TM_HPP PF04982 88 - 202 2.1e-24 HPP, transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 224, 575
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 1 cut(s) 797
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 2 cut(s) 296, 625
AflIII ACRYGT 1 cut(s) 441
AgsI TTSAA 5 cut(s) 111, 363, 764, 784, 796
AjnI CCWGG 2 cut(s) 421, 577
AjuI GAANNNNNNNTTGG 2 cut(s) 343, 375
AluBI AGCT 6 cut(s) 27, 150, 386, 522, 656, 663
AluI AGCT 6 cut(s) 27, 150, 386, 522, 656, 663
Alw21I GWGCWC 1 cut(s) 430
AoxI GGCC 4 cut(s) 142, 201, 287, 500
ApeKI GCWGC 5 cut(s) 467, 533, 653, 656, 734
ApoI RAATTY 1 cut(s) 797
AspLEI GCGC 2 cut(s) 223, 734
AspS9I GGNCC 1 cut(s) 500
AsuC2I CCSGG 3 cut(s) 504, 517, 729
AsuHPI GGTGA 1 cut(s) 692
BarI GAAGNNNNNNTAC 2 cut(s) 707, 739
Bbv12I GWGCWC 1 cut(s) 430
BbvCI CCTCAGC 1 cut(s) 272
BbvI GCAGC 5 cut(s) 479, 520, 643, 665, 721
BccI CCATC 2 cut(s) 45, 763
BciT130I CCWGG 2 cut(s) 423, 579
BcnI CCSGG 3 cut(s) 504, 517, 729
BfaI CTAG 1 cut(s) 482
BfmI CTRYAG 1 cut(s) 294
BfoI RGCGCY 1 cut(s) 735
BglI GCCNNNNNGGC 1 cut(s) 508
BisI GCNGC 6 cut(s) 224, 468, 534, 654, 657, 735
BlsI GCNGC 6 cut(s) 225, 469, 535, 655, 658, 736
Bme1390I CCNGG 5 cut(s) 423, 504, 517, 579, 729
BmgT120I GGNCC 1 cut(s) 500
BmrFI CCNGG 5 cut(s) 423, 504, 517, 579, 729
BmsI GCATC 4 cut(s) 330, 706, 731, 753
BpmI CTGGAG 1 cut(s) 405
Bpu10I CCTNAGC 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 190
BpuMI CCSGG 3 cut(s) 504, 517, 729
BsaJI CCNNGG 2 cut(s) 503, 727
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 625
Bse118I RCCGGY 1 cut(s) 140
Bse3DI GCAATG 2 cut(s) 318, 540
BseBI CCWGG 2 cut(s) 423, 579
BseDI CCNNGG 2 cut(s) 503, 727
BseGI GGATG 3 cut(s) 571, 744, 746
BseLI CCNNNNNNNGG 2 cut(s) 296, 625
BseMI GCAATG 2 cut(s) 318, 540
BseMII CTCAG 1 cut(s) 286
BseX3I CGGCCG 1 cut(s) 142
BseXI GCAGC 5 cut(s) 479, 520, 643, 665, 721
BsgI GTGCAG 2 cut(s) 486, 672
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 4 cut(s) 144, 203, 289, 502
BsiEI CGRYCG 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 430
BsiSI CCGG 6 cut(s) 71, 141, 503, 517, 729, 738
BslI CCNNNNNNNGG 2 cut(s) 296, 625
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 4 cut(s) 144, 203, 289, 502
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 2 cut(s) 552, 641
BspACI CCGC 2 cut(s) 224, 575
BspANI GGCC 4 cut(s) 144, 203, 289, 502
BspCNI CTCAG 1 cut(s) 285
BspHI TCATGA 1 cut(s) 549
BspMAI CTGCAG 1 cut(s) 298
BsrDI GCAATG 2 cut(s) 318, 540
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 503, 727
BssMI GATC 2 cut(s) 552, 641
Bst2UI CCWGG 2 cut(s) 423, 579
Bst6I CTCTTC 1 cut(s) 680
BstC8I GCNNGC 5 cut(s) 8, 142, 513, 661, 665
BstDEI CTNAG 1 cut(s) 272
BstENI CCTNNNNNAGG 1 cut(s) 294
BstF5I GGATG 3 cut(s) 571, 744, 746
BstH2I RGCGCY 1 cut(s) 735
BstHHI GCGC 2 cut(s) 223, 734
BstKTI GATC 2 cut(s) 555, 644
BstMBI GATC 2 cut(s) 552, 641
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 8 cut(s) 62, 71, 260, 308, 392, 508, 533, 542
BstNI CCWGG 2 cut(s) 423, 579
BstNSI RCATGY 2 cut(s) 10, 445
BstSCI CCNGG 5 cut(s) 421, 502, 515, 577, 727
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 5 cut(s) 479, 520, 643, 665, 721
BstZI CGGCCG 1 cut(s) 142
BsuRI GGCC 4 cut(s) 144, 203, 289, 502
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 3 cut(s) 571, 744, 746
Cac8I GCNNGC 5 cut(s) 8, 142, 513, 661, 665
CciI TCATGA 1 cut(s) 549
CfoI GCGC 2 cut(s) 223, 734
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 500
Csp6I GTAC 1 cut(s) 436
CspCI CAANNNNNGTGG 2 cut(s) 195, 230
CviAII CATG 4 cut(s) 7, 442, 448, 550
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 1 cut(s) 272
DpnI GATC 2 cut(s) 554, 643
DpnII GATC 2 cut(s) 552, 641
EaeI YGGCCR 1 cut(s) 142
EagI CGGCCG 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 680
EarI CTCTTC 1 cut(s) 680
EciI GGCGGA 1 cut(s) 564
EclXI CGGCCG 1 cut(s) 142
Eco52I CGGCCG 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 294
EcoRII CCWGG 2 cut(s) 421, 577
EcoT22I ATGCAT 1 cut(s) 746
FaeI CATG 4 cut(s) 10, 445, 451, 553
FaiI YATR 8 cut(s) 8, 186, 192, 443, 449, 551, 638, 717
FalI AAGNNNNNCTT 1 cut(s) 776
FatI CATG 4 cut(s) 6, 441, 447, 549
Fnu4HI GCNGC 6 cut(s) 224, 468, 534, 654, 657, 735
FokI GGATG 3 cut(s) 558, 731, 753
Fsp4HI GCNGC 6 cut(s) 224, 468, 534, 654, 657, 735
FspBI CTAG 1 cut(s) 482
GlaI GCGC 2 cut(s) 222, 733
GluI GCNGC 6 cut(s) 224, 468, 534, 654, 657, 735
GsuI CTGGAG 1 cut(s) 405
HaeII RGCGCY 1 cut(s) 735
HaeIII GGCC 4 cut(s) 144, 203, 289, 502
HapII CCGG 6 cut(s) 71, 141, 503, 517, 729, 738
HhaI GCGC 2 cut(s) 223, 734
Hin1II CATG 4 cut(s) 10, 445, 451, 553
Hin6I GCGC 2 cut(s) 221, 732
HinP1I GCGC 2 cut(s) 221, 732
HindIII AAGCTT 1 cut(s) 148
HinfI GANTC 1 cut(s) 760
HpaII CCGG 6 cut(s) 71, 141, 503, 517, 729, 738
HphI GGTGA 1 cut(s) 692
Hpy188I TCNGA 4 cut(s) 122, 158, 432, 803
Hpy188III TCNNGA 1 cut(s) 550
Hpy99I CGWCG 3 cut(s) 166, 599, 602
HpyAV CCTTC 6 cut(s) 53, 276, 300, 556, 758, 778
HpyCH4IV ACGT 2 cut(s) 213, 594
HpyCH4V TGCA 8 cut(s) 10, 65, 296, 374, 467, 653, 697, 744
HpyF10VI GCNNNNNNNGC 8 cut(s) 62, 71, 260, 308, 392, 508, 533, 542
HpyF3I CTNAG 1 cut(s) 272
HpySE526I ACGT 2 cut(s) 213, 594
Hsp92II CATG 4 cut(s) 10, 445, 451, 553
HspAI GCGC 2 cut(s) 221, 732
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Kzo9I GATC 2 cut(s) 552, 641
LmnI GCTCC 5 cut(s) 268, 383, 519, 569, 686
Lsp1109I GCAGC 5 cut(s) 479, 520, 643, 665, 721
LweI GCATC 4 cut(s) 330, 706, 731, 753
MaeI CTAG 1 cut(s) 482
MaeII ACGT 2 cut(s) 213, 594
MaeIII GTNAC 1 cut(s) 774
MalI GATC 2 cut(s) 554, 643
MboI GATC 2 cut(s) 552, 641
MfeI CAATTG 1 cut(s) 369
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 7 cut(s) 111, 178, 369, 456, 645, 706, 797
MnlI CCTC 9 cut(s) 9, 146, 214, 226, 281, 410, 427, 539, 598
Mph1103I ATGCAT 1 cut(s) 746
MroNI GCCGGC 1 cut(s) 140
MseI TTAA 1 cut(s) 152
MslI CAYNNNNRTG 3 cut(s) 11, 189, 446
MspA1I CMGCKG 1 cut(s) 656
MspI CCGG 6 cut(s) 71, 141, 503, 517, 729, 738
MspR9I CCNGG 5 cut(s) 423, 504, 517, 579, 729
MunI CAATTG 1 cut(s) 369
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 2 cut(s) 423, 579
MwoI GCNNNNNNNGC 8 cut(s) 62, 71, 260, 308, 392, 508, 533, 542
NaeI GCCGGC 1 cut(s) 142
NciI CCSGG 3 cut(s) 504, 517, 729
NdeII GATC 2 cut(s) 552, 641
NgoMIV GCCGGC 1 cut(s) 140
NlaIII CATG 4 cut(s) 10, 445, 451, 553
NsiI ATGCAT 1 cut(s) 746
NspI RCATGY 2 cut(s) 10, 445
PaeI GCATGC 1 cut(s) 10
PagI TCATGA 1 cut(s) 549
PciI ACATGT 1 cut(s) 441
PctI GAATGC 1 cut(s) 74
PdiI GCCGGC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 760
PkrI GCNGC 6 cut(s) 225, 469, 535, 655, 658, 736
PscI ACATGT 1 cut(s) 441
Psp6I CCWGG 2 cut(s) 421, 577
PspGI CCWGG 2 cut(s) 421, 577
PspPI GGNCC 1 cut(s) 500
PsrI GAACNNNNNNTAC 2 cut(s) 428, 460
PstI CTGCAG 1 cut(s) 298
PvuII CAGCTG 1 cut(s) 656
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 3 cut(s) 11, 189, 446
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 6 cut(s) 224, 468, 534, 654, 657, 735
Sau3AI GATC 2 cut(s) 552, 641
Sau96I GGNCC 1 cut(s) 500
ScrFI CCNGG 5 cut(s) 423, 504, 517, 579, 729
SduI GDGCHC 1 cut(s) 430
SfaNI GCATC 4 cut(s) 330, 706, 731, 753
SfcI CTRYAG 1 cut(s) 294
SmiMI CAYNNNNRTG 3 cut(s) 11, 189, 446
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
SphI GCATGC 1 cut(s) 10
Sse9I AATT 7 cut(s) 111, 178, 369, 456, 645, 706, 797
SsiI CCGC 2 cut(s) 224, 575
SspMI CTAG 1 cut(s) 482
StyD4I CCNGG 5 cut(s) 421, 502, 515, 577, 727
TaiI ACGT 2 cut(s) 216, 597
TasI AATT 7 cut(s) 111, 178, 369, 456, 645, 706, 797
TatI WGTACW 1 cut(s) 435
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 1 cut(s) 760
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TseI GCWGC 5 cut(s) 467, 533, 653, 656, 734
TspDTI ATGAA 4 cut(s) 35, 436, 538, 667
TspGWI ACGGA 2 cut(s) 608, 699
XagI CCTNNNNNAGG 1 cut(s) 294
XapI RAATTY 1 cut(s) 797
XceI RCATGY 2 cut(s) 10, 445
XspI CTAG 1 cut(s) 482
Zsp2I ATGCAT 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.