RLG00000005255

HPP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0007927
Physical Location & Seq
Reverse (-)
66252813 .. 66254346
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005255

Sequence Viewer

Length: 729 bp
ATGGGCATGCAAATGAGGATTATTAGCTACCACCACCCTCTCCTTCATCACAATGCTTCTTCTGCAACTCCGGCATTTTCAATGTCTTTACGCCCTTTTTCTTCTTCTTCAATTTTATTCCGATTTCACAAGAACCTGGCCGGCCGAAGCGTAATCAGAACGACGAAAGGAAGAAGTAGTTATCATAACTATGGGATTGTGGCCTCAAGCAACGTGGGTGCGCCGCTTTGGGAGGCTTGGAAACCTGACAAGGCTTCTTCTTCTCCTTCCCTCAGCGACGTTCTTTGGCCTTCTGCAGGGGCATTTACAGCAATGGCGATATTGGGAAGAATAGATGAGATGCTAACACCAAAAGGAGTTTCAATGACAATTGCACCTTTAGGAGCTGTTTGTGCTGTCCTCTTTGCCACTCCCACCTCTCCAGGTGCTCGGAAGTACAACATGTTCATGGCACAAATTGGTTGTGCCGCCATTGGCGTCCTAGCATTTTCTGTATTAGGGCCAGGGTGGCTTGCCCGGAGCTTTGCCCTCGCTGCAGCCATTGCCTTCATGATCTTCACACGCTCCACTCATCCGCCAGCTGCGAGCTTGCCAATACTCTTCATTGACGGAGCAAAGTTGCATCACCTGAATTATTGGTATGCTTTCTTCCCCGGCGCTGCCGGATGCATCCTTCTTTGCTTGATTCAAGTGATGGTGTTACACTTGAAGGACAACTTCAAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HPP

Protein Analysis

243

Amino Acids

26.12

Weight (kDa)

9.98

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TM_HPP PF04982 88 - 236 9.5e-33 HPP, transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 224, 468, 575
AcoI YGGCCR 2 cut(s) 138, 142
AcsI RAATTY 1 cut(s) 722
AcyI GRCGYC 1 cut(s) 477
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 441
AgsI TTSAA 6 cut(s) 81, 111, 363, 689, 709, 721
AjnI CCWGG 3 cut(s) 135, 421, 502
AjuI GAANNNNNNNTTGG 2 cut(s) 343, 375
AluBI AGCT 5 cut(s) 27, 386, 522, 581, 588
AluI AGCT 5 cut(s) 27, 386, 522, 581, 588
Alw21I GWGCWC 1 cut(s) 430
AoxI GGCC 5 cut(s) 138, 142, 201, 287, 500
ApeKI GCWGC 4 cut(s) 533, 536, 581, 659
ApoI RAATTY 1 cut(s) 722
AspLEI GCGC 2 cut(s) 223, 659
AspS9I GGNCC 1 cut(s) 500
AsuC2I CCSGG 2 cut(s) 517, 654
AsuHPI GGTGA 1 cut(s) 617
BarI GAAGNNNNNNTAC 2 cut(s) 632, 664
Bbv12I GWGCWC 1 cut(s) 430
BbvCI CCTCAGC 1 cut(s) 272
BbvI GCAGC 4 cut(s) 520, 548, 568, 646
BccI CCATC 1 cut(s) 688
BciT130I CCWGG 3 cut(s) 137, 423, 504
BcnI CCSGG 2 cut(s) 517, 654
BfaI CTAG 1 cut(s) 482
BfmI CTRYAG 2 cut(s) 294, 534
BfoI RGCGCY 1 cut(s) 660
BglI GCCNNNNNGGC 1 cut(s) 508
BisI GCNGC 6 cut(s) 224, 468, 534, 537, 582, 660
BlsI GCNGC 6 cut(s) 225, 469, 535, 538, 583, 661
Bme1390I CCNGG 5 cut(s) 137, 423, 504, 517, 654
BmgT120I GGNCC 1 cut(s) 500
BmrFI CCNGG 5 cut(s) 137, 423, 504, 517, 654
BmsI GCATC 4 cut(s) 330, 631, 656, 678
BpmI CTGGAG 1 cut(s) 405
Bpu10I CCTNAGC 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 190
BpuMI CCSGG 2 cut(s) 517, 654
BsaHI GRCGYC 1 cut(s) 477
BsaJI CCNNGG 2 cut(s) 503, 652
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse118I RCCGGY 1 cut(s) 140
Bse3DI GCAATG 2 cut(s) 318, 540
BseBI CCWGG 3 cut(s) 137, 423, 504
BseDI CCNNGG 2 cut(s) 503, 652
BseGI GGATG 3 cut(s) 571, 669, 671
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMI GCAATG 2 cut(s) 318, 540
BseMII CTCAG 1 cut(s) 286
BseX3I CGGCCG 1 cut(s) 142
BseXI GCAGC 4 cut(s) 520, 548, 568, 646
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 5 cut(s) 140, 144, 203, 289, 502
BsiEI CGRYCG 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 430
BsiSI CCGG 5 cut(s) 71, 141, 517, 654, 663
BslI CCNNNNNNNGG 1 cut(s) 296
BsnI GGCC 5 cut(s) 140, 144, 203, 289, 502
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 1 cut(s) 552
BspACI CCGC 3 cut(s) 224, 468, 575
BspANI GGCC 5 cut(s) 140, 144, 203, 289, 502
BspCNI CTCAG 1 cut(s) 285
BspHI TCATGA 1 cut(s) 549
BspMAI CTGCAG 2 cut(s) 298, 538
BsrDI GCAATG 2 cut(s) 318, 540
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 503, 652
BssMI GATC 1 cut(s) 552
BssNI GRCGYC 1 cut(s) 477
Bst2UI CCWGG 3 cut(s) 137, 423, 504
Bst6I CTCTTC 1 cut(s) 605
BstACI GRCGYC 1 cut(s) 477
BstAPI GCANNNNNTGC 1 cut(s) 542
BstC8I GCNNGC 6 cut(s) 8, 142, 513, 579, 586, 590
BstDEI CTNAG 1 cut(s) 272
BstENI CCTNNNNNAGG 1 cut(s) 294
BstF5I GGATG 3 cut(s) 571, 669, 671
BstH2I RGCGCY 1 cut(s) 660
BstHHI GCGC 2 cut(s) 223, 659
BstKTI GATC 1 cut(s) 555
BstMBI GATC 1 cut(s) 552
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 7 cut(s) 62, 71, 308, 392, 508, 533, 542
BstNI CCWGG 3 cut(s) 137, 423, 504
BstNSI RCATGY 2 cut(s) 10, 445
BstSCI CCNGG 5 cut(s) 135, 421, 502, 515, 652
BstSFI CTRYAG 2 cut(s) 294, 534
BstV1I GCAGC 4 cut(s) 520, 548, 568, 646
BstZI CGGCCG 1 cut(s) 142
BsuRI GGCC 5 cut(s) 140, 144, 203, 289, 502
BtsCI GGATG 3 cut(s) 571, 669, 671
Cac8I GCNNGC 6 cut(s) 8, 142, 513, 579, 586, 590
CciI TCATGA 1 cut(s) 549
CfoI GCGC 2 cut(s) 223, 659
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 500
CseI GACGC 1 cut(s) 466
Csp6I GTAC 1 cut(s) 436
CspCI CAANNNNNGTGG 2 cut(s) 195, 230
CviAII CATG 4 cut(s) 7, 442, 448, 550
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 1 cut(s) 272
DpnI GATC 1 cut(s) 554
DpnII GATC 1 cut(s) 552
EaeI YGGCCR 2 cut(s) 138, 142
EagI CGGCCG 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 605
EarI CTCTTC 1 cut(s) 605
EciI GGCGGA 1 cut(s) 564
EclXI CGGCCG 1 cut(s) 142
Eco52I CGGCCG 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 294
EcoRII CCWGG 3 cut(s) 135, 421, 502
EcoT22I ATGCAT 1 cut(s) 671
FaeI CATG 4 cut(s) 10, 445, 451, 553
FaiI YATR 7 cut(s) 8, 186, 192, 443, 449, 551, 642
FalI AAGNNNNNCTT 1 cut(s) 701
FatI CATG 4 cut(s) 6, 441, 447, 549
Fnu4HI GCNGC 6 cut(s) 224, 468, 534, 537, 582, 660
FokI GGATG 3 cut(s) 558, 656, 678
FseI GGCCGGCC 1 cut(s) 144
Fsp4HI GCNGC 6 cut(s) 224, 468, 534, 537, 582, 660
FspBI CTAG 1 cut(s) 482
GlaI GCGC 2 cut(s) 222, 658
GluI GCNGC 6 cut(s) 224, 468, 534, 537, 582, 660
GsuI CTGGAG 1 cut(s) 405
HaeII RGCGCY 1 cut(s) 660
HaeIII GGCC 5 cut(s) 140, 144, 203, 289, 502
HapII CCGG 5 cut(s) 71, 141, 517, 654, 663
HgaI GACGC 1 cut(s) 466
HhaI GCGC 2 cut(s) 223, 659
Hin1I GRCGYC 1 cut(s) 477
Hin1II CATG 4 cut(s) 10, 445, 451, 553
Hin6I GCGC 2 cut(s) 221, 657
HinP1I GCGC 2 cut(s) 221, 657
HinfI GANTC 1 cut(s) 685
HpaII CCGG 5 cut(s) 71, 141, 517, 654, 663
HphI GGTGA 1 cut(s) 617
Hpy188I TCNGA 4 cut(s) 122, 158, 432, 728
Hpy188III TCNNGA 1 cut(s) 550
Hpy99I CGWCG 2 cut(s) 166, 281
HpyAV CCTTC 6 cut(s) 53, 276, 300, 556, 683, 703
HpyCH4IV ACGT 2 cut(s) 213, 279
HpyCH4V TGCA 7 cut(s) 10, 65, 296, 374, 536, 622, 669
HpyF10VI GCNNNNNNNGC 7 cut(s) 62, 71, 308, 392, 508, 533, 542
HpyF3I CTNAG 1 cut(s) 272
HpySE526I ACGT 2 cut(s) 213, 279
Hsp92I GRCGYC 1 cut(s) 477
Hsp92II CATG 4 cut(s) 10, 445, 451, 553
HspAI GCGC 2 cut(s) 221, 657
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Kzo9I GATC 1 cut(s) 552
LmnI GCTCC 4 cut(s) 383, 519, 569, 611
Lsp1109I GCAGC 4 cut(s) 520, 548, 568, 646
LweI GCATC 4 cut(s) 330, 631, 656, 678
MaeI CTAG 1 cut(s) 482
MaeII ACGT 2 cut(s) 213, 279
MaeIII GTNAC 1 cut(s) 699
MalI GATC 1 cut(s) 554
MboI GATC 1 cut(s) 552
MfeI CAATTG 1 cut(s) 369
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 5 cut(s) 111, 369, 456, 631, 722
MnlI CCTC 8 cut(s) 9, 48, 214, 226, 281, 410, 427, 539
Mph1103I ATGCAT 1 cut(s) 671
MroNI GCCGGC 1 cut(s) 140
MslI CAYNNNNRTG 4 cut(s) 11, 51, 189, 446
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 5 cut(s) 71, 141, 517, 654, 663
MspR9I CCNGG 5 cut(s) 137, 423, 504, 517, 654
MunI CAATTG 1 cut(s) 369
MvaI CCWGG 3 cut(s) 137, 423, 504
MwoI GCNNNNNNNGC 7 cut(s) 62, 71, 308, 392, 508, 533, 542
NaeI GCCGGC 1 cut(s) 142
NciI CCSGG 2 cut(s) 517, 654
NdeII GATC 1 cut(s) 552
NgoMIV GCCGGC 1 cut(s) 140
NlaIII CATG 4 cut(s) 10, 445, 451, 553
NsiI ATGCAT 1 cut(s) 671
NspI RCATGY 2 cut(s) 10, 445
PaeI GCATGC 1 cut(s) 10
PagI TCATGA 1 cut(s) 549
PciI ACATGT 1 cut(s) 441
PdiI GCCGGC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 685
PkrI GCNGC 6 cut(s) 225, 469, 535, 538, 583, 661
PscI ACATGT 1 cut(s) 441
Psp6I CCWGG 3 cut(s) 135, 421, 502
PspGI CCWGG 3 cut(s) 135, 421, 502
PspPI GGNCC 1 cut(s) 500
PsrI GAACNNNNNNTAC 2 cut(s) 428, 460
PstI CTGCAG 2 cut(s) 298, 538
PvuII CAGCTG 1 cut(s) 581
RigI GGCCGGCC 1 cut(s) 144
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 4 cut(s) 11, 51, 189, 446
SatI GCNGC 6 cut(s) 224, 468, 534, 537, 582, 660
Sau3AI GATC 1 cut(s) 552
Sau96I GGNCC 1 cut(s) 500
ScrFI CCNGG 5 cut(s) 137, 423, 504, 517, 654
SduI GDGCHC 1 cut(s) 430
SfaNI GCATC 4 cut(s) 330, 631, 656, 678
SfcI CTRYAG 2 cut(s) 294, 534
SmiMI CAYNNNNRTG 4 cut(s) 11, 51, 189, 446
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
SphI GCATGC 1 cut(s) 10
Sse9I AATT 5 cut(s) 111, 369, 456, 631, 722
SsiI CCGC 3 cut(s) 224, 468, 575
SspMI CTAG 1 cut(s) 482
StyD4I CCNGG 5 cut(s) 135, 421, 502, 515, 652
TaiI ACGT 2 cut(s) 216, 282
TasI AATT 5 cut(s) 111, 369, 456, 631, 722
TatI WGTACW 1 cut(s) 435
TauI GCSGC 2 cut(s) 226, 470
TfiI GAWTC 1 cut(s) 685
TseI GCWGC 4 cut(s) 533, 536, 581, 659
TspDTI ATGAA 4 cut(s) 35, 436, 538, 592
TspGWI ACGGA 1 cut(s) 624
XagI CCTNNNNNAGG 1 cut(s) 294
XapI RAATTY 1 cut(s) 722
XceI RCATGY 2 cut(s) 10, 445
XspI CTAG 1 cut(s) 482
Zsp2I ATGCAT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.