Rh7AG035100

HPP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0007927
Physical Location & Seq
Forward (+)
2425471 .. 2427771
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG035100.1

Sequence Viewer

Length: 522 bp
ATGGGCATGCAAATGAGGATTATTAGCTACCACCACCATCTCCTTCATCACAATGCTTCTTCTGCAACTCCGGCATTCTCAATGTCTTTACGCCCTTTTTCTTCTTCTTCGTCTTCAATTTTATTCCGATTTCACAAGAACCTCGCGGGCCGAAGCGTAATCAGAACGACGAAAGGAAGAAGCAGTTATCACAACTATGGGATTGTGGCCTCAAGCAACGTGGGTGCGCCGCTTTGGGAGGCTTGGAAACCTGACAAGGCTTCTTCTGCTCCTTCCCTCAGCGATGTTCTTTGGCCTTCTGCAGGGGCATTTACAGCAATGGCGATATTGGGAAGACTAGATGAGATGCTAACACCAAAAGGAGTTTCAATGACAATTGCACCTTTAGGAGCTGTTTGTGCTGTCCTCTTTGCCACTCCCACCTCTCCAGGTGCTCGGGTAAATTCTGTTTTCTCTTCTTTCGGCGTTAGTTCATTAGTGATGGTATTATTTTACTCAAATGTCTTCAAGTGTTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HPP

Protein Analysis

173

Amino Acids

18.58

Weight (kDa)

10.09

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TM_HPP PF04982 90 - 166 1.2e-10 HPP, transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 146
AciI CCGC 2 cut(s) 146, 230
AcsI RAATTY 1 cut(s) 442
AfiI CCNNNNNNNGG 1 cut(s) 302
AgsI TTSAA 3 cut(s) 117, 369, 508
AjnI CCWGG 1 cut(s) 427
AjuI GAANNNNNNNTTGG 2 cut(s) 349, 381
AluBI AGCT 2 cut(s) 27, 392
AluI AGCT 2 cut(s) 27, 392
Alw21I GWGCWC 1 cut(s) 436
Ama87I CYCGRG 1 cut(s) 435
AoxI GGCC 3 cut(s) 148, 207, 293
ApoI RAATTY 1 cut(s) 442
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 148
AvaI CYCGRG 1 cut(s) 435
BbsI GAAGAC 3 cut(s) 105, 340, 496
Bbv12I GWGCWC 1 cut(s) 436
BbvCI CCTCAGC 1 cut(s) 278
BccI CCATC 2 cut(s) 45, 475
BciT130I CCWGG 1 cut(s) 429
BfaI CTAG 1 cut(s) 338
BfmI CTRYAG 1 cut(s) 300
BisI GCNGC 1 cut(s) 230
BlsI GCNGC 1 cut(s) 231
Bme1390I CCNGG 1 cut(s) 429
BmeT110I CYCGRG 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 148
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 1 cut(s) 336
BpiI GAAGAC 3 cut(s) 105, 340, 496
BpmI CTGGAG 1 cut(s) 411
Bpu10I CCTNAGC 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 324
BseBI CCWGG 1 cut(s) 429
BseLI CCNNNNNNNGG 1 cut(s) 302
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 292
Bsh1236I CGCG 1 cut(s) 146
BshFI GGCC 3 cut(s) 150, 209, 295
BsiHKAI GWGCWC 1 cut(s) 436
BsiHKCI CYCGRG 1 cut(s) 435
BsiSI CCGG 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 302
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 3 cut(s) 150, 209, 295
BsoBI CYCGRG 1 cut(s) 435
Bsp1286I GDGCHC 1 cut(s) 436
BspACI CCGC 2 cut(s) 146, 230
BspANI GGCC 3 cut(s) 150, 209, 295
BspCNI CTCAG 1 cut(s) 291
BspFNI CGCG 1 cut(s) 146
BspMAI CTGCAG 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 429
Bst6I CTCTTC 1 cut(s) 460
BstC8I GCNNGC 2 cut(s) 8, 148
BstDEI CTNAG 1 cut(s) 278
BstENI CCTNNNNNAGG 1 cut(s) 300
BstFNI CGCG 1 cut(s) 146
BstHHI GCGC 1 cut(s) 229
BstMWI GCNNNNNNNGC 5 cut(s) 62, 71, 266, 314, 398
BstNI CCWGG 1 cut(s) 429
BstNSI RCATGY 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 427
BstSFI CTRYAG 1 cut(s) 300
BstUI CGCG 1 cut(s) 146
BstV2I GAAGAC 3 cut(s) 105, 340, 496
BsuRI GGCC 3 cut(s) 150, 209, 295
BtgZI GCGATG 1 cut(s) 297
Cac8I GCNNGC 2 cut(s) 8, 148
CfoI GCGC 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 148
CspCI CAANNNNNGTGG 2 cut(s) 201, 236
CviAII CATG 1 cut(s) 7
CviJI RGCY 7 cut(s) 27, 150, 209, 242, 260, 295, 392
CviKI_1 RGCY 7 cut(s) 27, 150, 209, 242, 260, 295, 392
DdeI CTNAG 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 460
Eco88I CYCGRG 1 cut(s) 435
EcoNI CCTNNNNNAGG 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 427
FaeI CATG 1 cut(s) 10
FaiI YATR 3 cut(s) 8, 198, 516
FatI CATG 1 cut(s) 6
FauI CCCGC 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 230
Fsp4HI GCNGC 1 cut(s) 230
FspBI CTAG 1 cut(s) 338
GlaI GCGC 1 cut(s) 228
GluI GCNGC 1 cut(s) 230
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 3 cut(s) 150, 209, 295
HapII CCGG 1 cut(s) 71
HhaI GCGC 1 cut(s) 229
Hin1II CATG 1 cut(s) 10
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HpaII CCGG 1 cut(s) 71
Hpy188I TCNGA 2 cut(s) 128, 164
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 3 cut(s) 53, 282, 306
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 4 cut(s) 10, 65, 302, 380
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 71, 266, 314, 398
HpyF3I CTNAG 1 cut(s) 278
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 1 cut(s) 10
HspAI GCGC 1 cut(s) 227
LmnI GCTCC 2 cut(s) 274, 389
LpnPI CCDG 5 cut(s) 84, 264, 288, 414, 441
LweI GCATC 1 cut(s) 336
MaeI CTAG 1 cut(s) 338
MaeII ACGT 1 cut(s) 219
MfeI CAATTG 1 cut(s) 375
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 3 cut(s) 117, 375, 442
MnlI CCTC 7 cut(s) 9, 152, 220, 232, 287, 416, 433
MseI TTAA 1 cut(s) 520
MslI CAYNNNNRTG 3 cut(s) 11, 51, 195
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 429
MunI CAATTG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 1 cut(s) 429
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 5 cut(s) 62, 71, 266, 314, 398
NlaIII CATG 1 cut(s) 10
NspI RCATGY 1 cut(s) 10
PaeI GCATGC 1 cut(s) 10
PctI GAATGC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspPI GGNCC 1 cut(s) 148
PstI CTGCAG 1 cut(s) 304
RseI CAYNNNNRTG 3 cut(s) 11, 51, 195
SaqAI TTAA 1 cut(s) 520
SatI GCNGC 1 cut(s) 230
Sau96I GGNCC 1 cut(s) 148
ScrFI CCNGG 1 cut(s) 429
SduI GDGCHC 1 cut(s) 436
SetI ASST 8 cut(s) 29, 144, 222, 253, 385, 394, 425, 433
SfaNI GCATC 1 cut(s) 336
SfcI CTRYAG 1 cut(s) 300
SmiMI CAYNNNNRTG 3 cut(s) 11, 51, 195
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
SphI GCATGC 1 cut(s) 10
Sse9I AATT 3 cut(s) 117, 375, 442
SsiI CCGC 2 cut(s) 146, 230
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 427
TaiI ACGT 1 cut(s) 222
TasI AATT 3 cut(s) 117, 375, 442
TauI GCSGC 1 cut(s) 232
Tru1I TTAA 1 cut(s) 520
Tru9I TTAA 1 cut(s) 520
TspDTI ATGAA 2 cut(s) 35, 462
XagI CCTNNNNNAGG 1 cut(s) 300
XapI RAATTY 1 cut(s) 442
XceI RCATGY 1 cut(s) 10
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.