RchiOBHm_Chr7g0180561

HPP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007927
Physical Location & Seq
Forward (+)
2454482 .. 2456524
2043 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16102

Sequence Viewer

Length: 735 bp
ATGGGCATGCAAATGAGGATTATTAGCTACCACCACCATCTCCTTCATCACAATGCTTCTTCTGCAACTCCGGCATTCTCAATGTCTTTACGCCCTTTTTCTTCTTCTTCGTCTTCAATTTTATTCCGATTTCACAAGAACCTCGCGGGCCGAAGCGTAATCAGAACGACGAAAGGAAGAAGTAGTTATCATAACTATGGGATTGTGGCCTCAAGCAACGTGGGTGCGCCGCTTTGGGAGGCTTGGAAACCTGACAAGGCTTCTTCTGCTCCTTCCCTCAGCGATGTTATTTGGCCTTCTGCAGGGGCATTTACAGCAATGGCGATATTGGGAAGACTAGATGAGATGCTAACACCAAAAGGAGTTTCAATGACAATTGCACCTTTAGGAGCTGTTTGTGCTGTCCTCTTTGCCACGCCCACCTCTCCAGGTGCTCGGAAGTACAACATGTTCATGGCACAAATTGGTTGTGCAGCCATTGGTGTCCTAGCATTTTCTGTATTAGGGCCAGGGTGGCTTGCCCGGAGCTTTGCCCTCGCTGCTTCCATTGCCTTCATGATCTTCACACGCTCCACTCATCCGCCAGCTGCGAGCTTGCCAATACTCTTCATTGACGGAGCAAAGTTGCATCACCTGAATTATTGGTATGCTTTCTTCCCCGGCGCTGCCGGATGCATCCTTCTTTGCTTGATTCAAGTGATGGTGTTACACTTGAAGGACAACTTCAAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HPP

Protein Analysis

244

Amino Acids

26.33

Weight (kDa)

9.98

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TM_HPP PF04982 90 - 238 2.3e-32 HPP, transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 146
AciI CCGC 3 cut(s) 146, 230, 581
AcsI RAATTY 1 cut(s) 728
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 1 cut(s) 302
AflIII ACRYGT 1 cut(s) 447
AgsI TTSAA 5 cut(s) 117, 369, 695, 715, 727
AjnI CCWGG 2 cut(s) 427, 508
AjuI GAANNNNNNNTTGG 2 cut(s) 349, 381
AluBI AGCT 5 cut(s) 27, 392, 528, 587, 594
AluI AGCT 5 cut(s) 27, 392, 528, 587, 594
Alw21I GWGCWC 1 cut(s) 436
AoxI GGCC 4 cut(s) 148, 207, 293, 506
ApeKI GCWGC 4 cut(s) 473, 539, 587, 665
ApoI RAATTY 1 cut(s) 728
AspLEI GCGC 2 cut(s) 229, 665
AspS9I GGNCC 2 cut(s) 148, 506
AsuC2I CCSGG 2 cut(s) 523, 660
AsuHPI GGTGA 1 cut(s) 623
BarI GAAGNNNNNNTAC 2 cut(s) 638, 670
BbsI GAAGAC 2 cut(s) 105, 340
Bbv12I GWGCWC 1 cut(s) 436
BbvCI CCTCAGC 1 cut(s) 278
BbvI GCAGC 4 cut(s) 485, 526, 574, 652
BccI CCATC 2 cut(s) 45, 694
BciT130I CCWGG 2 cut(s) 429, 510
BcnI CCSGG 2 cut(s) 523, 660
BfaI CTAG 2 cut(s) 338, 488
BfmI CTRYAG 1 cut(s) 300
BfoI RGCGCY 1 cut(s) 666
BglI GCCNNNNNGGC 1 cut(s) 514
BisI GCNGC 5 cut(s) 230, 474, 540, 588, 666
BlsI GCNGC 5 cut(s) 231, 475, 541, 589, 667
Bme1390I CCNGG 4 cut(s) 429, 510, 523, 660
BmgT120I GGNCC 2 cut(s) 148, 506
BmrFI CCNGG 4 cut(s) 429, 510, 523, 660
BmsI GCATC 4 cut(s) 336, 637, 662, 684
BpiI GAAGAC 2 cut(s) 105, 340
BpmI CTGGAG 1 cut(s) 411
Bpu10I CCTNAGC 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 196
BpuMI CCSGG 2 cut(s) 523, 660
BsaJI CCNNGG 2 cut(s) 509, 658
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse3DI GCAATG 2 cut(s) 324, 546
BseBI CCWGG 2 cut(s) 429, 510
BseDI CCNNGG 2 cut(s) 509, 658
BseGI GGATG 3 cut(s) 577, 675, 677
BseLI CCNNNNNNNGG 1 cut(s) 302
BseMI GCAATG 2 cut(s) 324, 546
BseMII CTCAG 1 cut(s) 292
BseXI GCAGC 4 cut(s) 485, 526, 574, 652
BsgI GTGCAG 1 cut(s) 492
Bsh1236I CGCG 1 cut(s) 146
BshFI GGCC 4 cut(s) 150, 209, 295, 508
BsiHKAI GWGCWC 1 cut(s) 436
BsiSI CCGG 4 cut(s) 71, 523, 660, 669
BslI CCNNNNNNNGG 1 cut(s) 302
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 4 cut(s) 150, 209, 295, 508
Bsp1286I GDGCHC 1 cut(s) 436
Bsp143I GATC 1 cut(s) 558
BspACI CCGC 3 cut(s) 146, 230, 581
BspANI GGCC 4 cut(s) 150, 209, 295, 508
BspCNI CTCAG 1 cut(s) 291
BspFNI CGCG 1 cut(s) 146
BspHI TCATGA 1 cut(s) 555
BspMAI CTGCAG 1 cut(s) 304
BsrDI GCAATG 2 cut(s) 324, 546
BssECI CCNNGG 2 cut(s) 509, 658
BssMI GATC 1 cut(s) 558
Bst2UI CCWGG 2 cut(s) 429, 510
Bst6I CTCTTC 1 cut(s) 611
BstC8I GCNNGC 6 cut(s) 8, 148, 519, 585, 592, 596
BstDEI CTNAG 1 cut(s) 278
BstENI CCTNNNNNAGG 1 cut(s) 300
BstF5I GGATG 3 cut(s) 577, 675, 677
BstFNI CGCG 1 cut(s) 146
BstH2I RGCGCY 1 cut(s) 666
BstHHI GCGC 2 cut(s) 229, 665
BstKTI GATC 1 cut(s) 561
BstMBI GATC 1 cut(s) 558
BstMWI GCNNNNNNNGC 8 cut(s) 62, 71, 266, 314, 398, 514, 539, 548
BstNI CCWGG 2 cut(s) 429, 510
BstNSI RCATGY 2 cut(s) 10, 451
BstSCI CCNGG 4 cut(s) 427, 508, 521, 658
BstSFI CTRYAG 1 cut(s) 300
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 4 cut(s) 485, 526, 574, 652
BstV2I GAAGAC 2 cut(s) 105, 340
BsuRI GGCC 4 cut(s) 150, 209, 295, 508
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 3 cut(s) 577, 675, 677
Cac8I GCNNGC 6 cut(s) 8, 148, 519, 585, 592, 596
CciI TCATGA 1 cut(s) 555
CfoI GCGC 2 cut(s) 229, 665
Cfr13I GGNCC 2 cut(s) 148, 506
Csp6I GTAC 1 cut(s) 442
CspCI CAANNNNNGTGG 2 cut(s) 201, 236
CviAII CATG 4 cut(s) 7, 448, 454, 556
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 1 cut(s) 278
DpnI GATC 1 cut(s) 560
DpnII GATC 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 611
EarI CTCTTC 1 cut(s) 611
EciI GGCGGA 1 cut(s) 570
EcoNI CCTNNNNNAGG 1 cut(s) 300
EcoRII CCWGG 2 cut(s) 427, 508
EcoT22I ATGCAT 1 cut(s) 677
FaeI CATG 4 cut(s) 10, 451, 457, 559
FaiI YATR 7 cut(s) 8, 192, 198, 449, 455, 557, 648
FalI AAGNNNNNCTT 1 cut(s) 707
FatI CATG 4 cut(s) 6, 447, 453, 555
FauI CCCGC 1 cut(s) 139
Fnu4HI GCNGC 5 cut(s) 230, 474, 540, 588, 666
FokI GGATG 3 cut(s) 564, 662, 684
Fsp4HI GCNGC 5 cut(s) 230, 474, 540, 588, 666
FspBI CTAG 2 cut(s) 338, 488
GlaI GCGC 2 cut(s) 228, 664
GluI GCNGC 5 cut(s) 230, 474, 540, 588, 666
GsuI CTGGAG 1 cut(s) 411
HaeII RGCGCY 1 cut(s) 666
HaeIII GGCC 4 cut(s) 150, 209, 295, 508
HapII CCGG 4 cut(s) 71, 523, 660, 669
HhaI GCGC 2 cut(s) 229, 665
Hin1II CATG 4 cut(s) 10, 451, 457, 559
Hin6I GCGC 2 cut(s) 227, 663
HinP1I GCGC 2 cut(s) 227, 663
HinfI GANTC 1 cut(s) 691
HpaII CCGG 4 cut(s) 71, 523, 660, 669
HphI GGTGA 1 cut(s) 623
Hpy188I TCNGA 4 cut(s) 128, 164, 438, 734
Hpy188III TCNNGA 1 cut(s) 556
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 6 cut(s) 53, 282, 306, 562, 689, 709
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 7 cut(s) 10, 65, 302, 380, 473, 628, 675
HpyF10VI GCNNNNNNNGC 8 cut(s) 62, 71, 266, 314, 398, 514, 539, 548
HpyF3I CTNAG 1 cut(s) 278
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 4 cut(s) 10, 451, 457, 559
HspAI GCGC 2 cut(s) 227, 663
Kzo9I GATC 1 cut(s) 558
LmnI GCTCC 5 cut(s) 274, 389, 525, 575, 617
Lsp1109I GCAGC 4 cut(s) 485, 526, 574, 652
LweI GCATC 4 cut(s) 336, 637, 662, 684
MaeI CTAG 2 cut(s) 338, 488
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 705
MalI GATC 1 cut(s) 560
MboI GATC 1 cut(s) 558
MfeI CAATTG 1 cut(s) 375
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 5 cut(s) 117, 375, 462, 637, 728
MnlI CCTC 8 cut(s) 9, 152, 220, 232, 287, 416, 433, 545
Mph1103I ATGCAT 1 cut(s) 677
MslI CAYNNNNRTG 4 cut(s) 11, 51, 195, 452
MspA1I CMGCKG 1 cut(s) 587
MspI CCGG 4 cut(s) 71, 523, 660, 669
MspR9I CCNGG 4 cut(s) 429, 510, 523, 660
MunI CAATTG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 2 cut(s) 429, 510
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 8 cut(s) 62, 71, 266, 314, 398, 514, 539, 548
NciI CCSGG 2 cut(s) 523, 660
NdeII GATC 1 cut(s) 558
NlaIII CATG 4 cut(s) 10, 451, 457, 559
NsiI ATGCAT 1 cut(s) 677
NspI RCATGY 2 cut(s) 10, 451
PaeI GCATGC 1 cut(s) 10
PagI TCATGA 1 cut(s) 555
PciI ACATGT 1 cut(s) 447
PctI GAATGC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 691
PkrI GCNGC 5 cut(s) 231, 475, 541, 589, 667
PscI ACATGT 1 cut(s) 447
Psp6I CCWGG 2 cut(s) 427, 508
PspGI CCWGG 2 cut(s) 427, 508
PspPI GGNCC 2 cut(s) 148, 506
PsrI GAACNNNNNNTAC 2 cut(s) 434, 466
PstI CTGCAG 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 587
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
RseI CAYNNNNRTG 4 cut(s) 11, 51, 195, 452
SatI GCNGC 5 cut(s) 230, 474, 540, 588, 666
Sau3AI GATC 1 cut(s) 558
Sau96I GGNCC 2 cut(s) 148, 506
ScrFI CCNGG 4 cut(s) 429, 510, 523, 660
SduI GDGCHC 1 cut(s) 436
SfaNI GCATC 4 cut(s) 336, 637, 662, 684
SfcI CTRYAG 1 cut(s) 300
SmiMI CAYNNNNRTG 4 cut(s) 11, 51, 195, 452
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
SphI GCATGC 1 cut(s) 10
Sse9I AATT 5 cut(s) 117, 375, 462, 637, 728
SsiI CCGC 3 cut(s) 146, 230, 581
SspMI CTAG 2 cut(s) 338, 488
StyD4I CCNGG 4 cut(s) 427, 508, 521, 658
TaiI ACGT 1 cut(s) 222
TasI AATT 5 cut(s) 117, 375, 462, 637, 728
TatI WGTACW 1 cut(s) 441
TauI GCSGC 1 cut(s) 232
TfiI GAWTC 1 cut(s) 691
TseI GCWGC 4 cut(s) 473, 539, 587, 665
TspDTI ATGAA 4 cut(s) 35, 442, 544, 598
TspGWI ACGGA 1 cut(s) 630
XagI CCTNNNNNAGG 1 cut(s) 300
XapI RAATTY 1 cut(s) 728
XceI RCATGY 2 cut(s) 10, 451
XspI CTAG 2 cut(s) 338, 488
Zsp2I ATGCAT 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.