Rw7G002880

HPP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0007927
Physical Location & Seq
Forward (+)
2388430 .. 2390649
2220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G002880.1

Sequence Viewer

Length: 699 bp
ATGGGCATGCAAATGAGGATTATTAGCTACCACCACCATCTCCTTCATCACAATGCTTCTTCTGCAACTCCGGCATTCTCAATGTCTTTACGCCCTTTTTCTTCTTCTTCTTCAATTTTATTCCGATTTCACAAGAACCTCGCGGGCCGAAGCATAATCAGAACGACGAAAGGAAGAAGTAGTTATCATAACTATGGGATTGTGGCCTCAAGCAACGTGGGTGCGCCGCTTTGGGAGGCTTGGAAACCTGACAAGGCTTCTTCTGCTCCTTCCCTCAGCGATGTTCTTTGGCCTTCTGCAGGGGCATTTACAGCAATGGCGATATTGGGAAGACTAGATGAGATGCTAACACCAAAAGGAGTTTCAATGACAATTGCACCTTTAGGAGCTGTTTGTGCTGTCCTCTTTGCCACTCCCACCTCTCCAGGTGCTCGGAAGTACAACATGTTCATGGCACAAATTGGTTGTGCAGCCATTGGTGTCCTAGCATTTTCTGTATTAGGGCCAGGGTGGCTTGCCCGGAGCTTTGCCCTCGCTGCTTCCATTGCCTTCATGATCTTCACACGCTCCACTCATCCGCCAGCTGCGAGCTTGCCAATACTCTTCATTGACGGAGCAAAGTTGCATCACCTGAATTATTGGTATGCTTTCTTCCCCGGCGCTGCCGGATGCATCCTTCTTTGCTTGATTGTAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HPP

Protein Analysis

232

Amino Acids

24.84

Weight (kDa)

9.97

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TM_HPP PF04982 89 - 230 1.1e-30 HPP, transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 143
AciI CCGC 3 cut(s) 143, 227, 578
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 1 cut(s) 299
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 2 cut(s) 114, 366
AjnI CCWGG 2 cut(s) 424, 505
AjuI GAANNNNNNNTTGG 2 cut(s) 346, 378
AluBI AGCT 5 cut(s) 27, 389, 525, 584, 591
AluI AGCT 5 cut(s) 27, 389, 525, 584, 591
Alw21I GWGCWC 1 cut(s) 433
AoxI GGCC 4 cut(s) 145, 204, 290, 503
ApeKI GCWGC 4 cut(s) 470, 536, 584, 662
AspLEI GCGC 2 cut(s) 226, 662
AspS9I GGNCC 2 cut(s) 145, 503
AsuC2I CCSGG 2 cut(s) 520, 657
AsuHPI GGTGA 1 cut(s) 620
BarI GAAGNNNNNNTAC 2 cut(s) 635, 667
BbsI GAAGAC 1 cut(s) 337
Bbv12I GWGCWC 1 cut(s) 433
BbvCI CCTCAGC 1 cut(s) 275
BbvI GCAGC 4 cut(s) 482, 523, 571, 649
BccI CCATC 1 cut(s) 45
BciT130I CCWGG 2 cut(s) 426, 507
BcnI CCSGG 2 cut(s) 520, 657
BfaI CTAG 2 cut(s) 335, 485
BfmI CTRYAG 1 cut(s) 297
BfoI RGCGCY 1 cut(s) 663
BglI GCCNNNNNGGC 1 cut(s) 511
BisI GCNGC 5 cut(s) 227, 471, 537, 585, 663
BlsI GCNGC 5 cut(s) 228, 472, 538, 586, 664
Bme1390I CCNGG 4 cut(s) 426, 507, 520, 657
BmgT120I GGNCC 2 cut(s) 145, 503
BmrFI CCNGG 4 cut(s) 426, 507, 520, 657
BmsI GCATC 4 cut(s) 333, 634, 659, 681
BpiI GAAGAC 1 cut(s) 337
BpmI CTGGAG 1 cut(s) 408
Bpu10I CCTNAGC 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 193
BpuMI CCSGG 2 cut(s) 520, 657
BsaJI CCNNGG 2 cut(s) 506, 655
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse3DI GCAATG 2 cut(s) 321, 543
BseBI CCWGG 2 cut(s) 426, 507
BseDI CCNNGG 2 cut(s) 506, 655
BseGI GGATG 3 cut(s) 574, 672, 674
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMI GCAATG 2 cut(s) 321, 543
BseMII CTCAG 1 cut(s) 289
BseXI GCAGC 4 cut(s) 482, 523, 571, 649
BsgI GTGCAG 1 cut(s) 489
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 4 cut(s) 147, 206, 292, 505
BsiHKAI GWGCWC 1 cut(s) 433
BsiSI CCGG 4 cut(s) 71, 520, 657, 666
BslI CCNNNNNNNGG 1 cut(s) 299
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 4 cut(s) 147, 206, 292, 505
Bsp1286I GDGCHC 1 cut(s) 433
Bsp143I GATC 1 cut(s) 555
BspACI CCGC 3 cut(s) 143, 227, 578
BspANI GGCC 4 cut(s) 147, 206, 292, 505
BspCNI CTCAG 1 cut(s) 288
BspFNI CGCG 1 cut(s) 143
BspHI TCATGA 1 cut(s) 552
BspMAI CTGCAG 1 cut(s) 301
BsrDI GCAATG 2 cut(s) 321, 543
BssECI CCNNGG 2 cut(s) 506, 655
BssMI GATC 1 cut(s) 555
Bst2UI CCWGG 2 cut(s) 426, 507
Bst6I CTCTTC 1 cut(s) 608
BstC8I GCNNGC 6 cut(s) 8, 145, 516, 582, 589, 593
BstDEI CTNAG 1 cut(s) 275
BstENI CCTNNNNNAGG 1 cut(s) 297
BstF5I GGATG 3 cut(s) 574, 672, 674
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 663
BstHHI GCGC 2 cut(s) 226, 662
BstKTI GATC 1 cut(s) 558
BstMBI GATC 1 cut(s) 555
BstMWI GCNNNNNNNGC 8 cut(s) 62, 71, 263, 311, 395, 511, 536, 545
BstNI CCWGG 2 cut(s) 426, 507
BstNSI RCATGY 2 cut(s) 10, 448
BstSCI CCNGG 4 cut(s) 424, 505, 518, 655
BstSFI CTRYAG 1 cut(s) 297
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 4 cut(s) 482, 523, 571, 649
BstV2I GAAGAC 1 cut(s) 337
BsuRI GGCC 4 cut(s) 147, 206, 292, 505
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 3 cut(s) 574, 672, 674
Cac8I GCNNGC 6 cut(s) 8, 145, 516, 582, 589, 593
CciI TCATGA 1 cut(s) 552
CfoI GCGC 2 cut(s) 226, 662
Cfr13I GGNCC 2 cut(s) 145, 503
Csp6I GTAC 1 cut(s) 439
CspCI CAANNNNNGTGG 2 cut(s) 198, 233
CviAII CATG 4 cut(s) 7, 445, 451, 553
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 1 cut(s) 275
DpnI GATC 1 cut(s) 557
DpnII GATC 1 cut(s) 555
Eam1104I CTCTTC 1 cut(s) 608
EarI CTCTTC 1 cut(s) 608
EciI GGCGGA 1 cut(s) 567
EcoNI CCTNNNNNAGG 1 cut(s) 297
EcoRII CCWGG 2 cut(s) 424, 505
EcoT22I ATGCAT 1 cut(s) 674
FaeI CATG 4 cut(s) 10, 448, 454, 556
FaiI YATR 8 cut(s) 8, 155, 189, 195, 446, 452, 554, 645
FatI CATG 4 cut(s) 6, 444, 450, 552
FauI CCCGC 1 cut(s) 136
Fnu4HI GCNGC 5 cut(s) 227, 471, 537, 585, 663
FokI GGATG 3 cut(s) 561, 659, 681
Fsp4HI GCNGC 5 cut(s) 227, 471, 537, 585, 663
FspBI CTAG 2 cut(s) 335, 485
GlaI GCGC 2 cut(s) 225, 661
GluI GCNGC 5 cut(s) 227, 471, 537, 585, 663
GsuI CTGGAG 1 cut(s) 408
HaeII RGCGCY 1 cut(s) 663
HaeIII GGCC 4 cut(s) 147, 206, 292, 505
HapII CCGG 4 cut(s) 71, 520, 657, 666
HhaI GCGC 2 cut(s) 226, 662
Hin1II CATG 4 cut(s) 10, 448, 454, 556
Hin6I GCGC 2 cut(s) 224, 660
HinP1I GCGC 2 cut(s) 224, 660
HpaII CCGG 4 cut(s) 71, 520, 657, 666
HphI GGTGA 1 cut(s) 620
Hpy188I TCNGA 3 cut(s) 125, 161, 435
Hpy188III TCNNGA 1 cut(s) 553
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 5 cut(s) 53, 279, 303, 559, 686
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 7 cut(s) 10, 65, 299, 377, 470, 625, 672
HpyF10VI GCNNNNNNNGC 8 cut(s) 62, 71, 263, 311, 395, 511, 536, 545
HpyF3I CTNAG 1 cut(s) 275
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 4 cut(s) 10, 448, 454, 556
HspAI GCGC 2 cut(s) 224, 660
Kzo9I GATC 1 cut(s) 555
LmnI GCTCC 5 cut(s) 271, 386, 522, 572, 614
Lsp1109I GCAGC 4 cut(s) 482, 523, 571, 649
LweI GCATC 4 cut(s) 333, 634, 659, 681
MaeI CTAG 2 cut(s) 335, 485
MaeII ACGT 1 cut(s) 216
MalI GATC 1 cut(s) 557
MboI GATC 1 cut(s) 555
MfeI CAATTG 1 cut(s) 372
MhlI GDGCHC 1 cut(s) 433
MluCI AATT 4 cut(s) 114, 372, 459, 634
MnlI CCTC 8 cut(s) 9, 149, 217, 229, 284, 413, 430, 542
Mph1103I ATGCAT 1 cut(s) 674
MslI CAYNNNNRTG 4 cut(s) 11, 51, 192, 449
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 4 cut(s) 71, 520, 657, 666
MspR9I CCNGG 4 cut(s) 426, 507, 520, 657
MunI CAATTG 1 cut(s) 372
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 2 cut(s) 426, 507
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 8 cut(s) 62, 71, 263, 311, 395, 511, 536, 545
NciI CCSGG 2 cut(s) 520, 657
NdeII GATC 1 cut(s) 555
NlaIII CATG 4 cut(s) 10, 448, 454, 556
NsiI ATGCAT 1 cut(s) 674
NspI RCATGY 2 cut(s) 10, 448
PaeI GCATGC 1 cut(s) 10
PagI TCATGA 1 cut(s) 552
PciI ACATGT 1 cut(s) 444
PctI GAATGC 1 cut(s) 74
PkrI GCNGC 5 cut(s) 228, 472, 538, 586, 664
PscI ACATGT 1 cut(s) 444
Psp6I CCWGG 2 cut(s) 424, 505
PspGI CCWGG 2 cut(s) 424, 505
PspPI GGNCC 2 cut(s) 145, 503
PsrI GAACNNNNNNTAC 2 cut(s) 431, 463
PstI CTGCAG 1 cut(s) 301
PvuII CAGCTG 1 cut(s) 584
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
RseI CAYNNNNRTG 4 cut(s) 11, 51, 192, 449
SatI GCNGC 5 cut(s) 227, 471, 537, 585, 663
Sau3AI GATC 1 cut(s) 555
Sau96I GGNCC 2 cut(s) 145, 503
ScrFI CCNGG 4 cut(s) 426, 507, 520, 657
SduI GDGCHC 1 cut(s) 433
SfaNI GCATC 4 cut(s) 333, 634, 659, 681
SfcI CTRYAG 1 cut(s) 297
SmiMI CAYNNNNRTG 4 cut(s) 11, 51, 192, 449
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
SphI GCATGC 1 cut(s) 10
Sse9I AATT 4 cut(s) 114, 372, 459, 634
SsiI CCGC 3 cut(s) 143, 227, 578
SspMI CTAG 2 cut(s) 335, 485
StyD4I CCNGG 4 cut(s) 424, 505, 518, 655
TaiI ACGT 1 cut(s) 219
TasI AATT 4 cut(s) 114, 372, 459, 634
TatI WGTACW 1 cut(s) 438
TauI GCSGC 1 cut(s) 229
TseI GCWGC 4 cut(s) 470, 536, 584, 662
TspDTI ATGAA 4 cut(s) 35, 439, 541, 595
TspGWI ACGGA 1 cut(s) 627
XagI CCTNNNNNAGG 1 cut(s) 297
XceI RCATGY 2 cut(s) 10, 448
XspI CTAG 2 cut(s) 335, 485
Zsp2I ATGCAT 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.