FvH4_5g15530

HPP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0007927
Physical Location & Seq
Reverse (-)
8765164 .. 8767400
2237 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g15530.t1

Sequence Viewer

Length: 636 bp
ATGCAAGCCTGTGTGCTAAAATGGCCCTCATCAACGTCTCTTCGACCTCACCAAAAGACCACCTCGTTTGTCAACCCTAACCCTCCATCTCTAAGATATCAACCATATCTACCGGGAACTACTAGACAACACAGAGAAAGAGAAGCGGCGGCCGGCGGAGAAGCTGGAGAAATGGGCATGCAAATGAGGATTGGCTACCACAATCATCTCCTTCATCACAGTGCTTCTGCAGCTCCGGCAGTCTCTACGTCTTTACGCCCCTTTTCTTCTTCTTCTTCTTCAATTTTATTCCGATTTCAGAAGAACTTGAGCGACGGAAGCGTAATCAGAACGACCAAAGGAAGAAGCAGTAGTTATCGCAATTATGGGATTGTGGCCTCAAGCAACGTGGGTGCGCCGCTTTGGGAGACTTGGAAACCTGACAAGGCTTCTTCTGCTCCTTCCCTCAGCGACGTTCTGTGGCCTTCTGCAGGGGCATTTGCAGCAATGGCGATATTGGGGAGAATGGATGAGATGCTAACACCCAAAGGAGTTTCAATGACAATTGCACCTTTAGGAGCTGTTTGTGCTGTCCTCTTTGCCACTCCTACCTCTCCAGGTGCCCGGCCATTGGGGTACTGGCATTTTCTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HPP

Protein Analysis

212

Amino Acids

22.8

Weight (kDa)

10.01

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TM_HPP PF04982 146 - 203 4.4e-09 HPP, transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 599
AciI CCGC 4 cut(s) 146, 149, 156, 398
AcoI YGGCCR 2 cut(s) 150, 605
AfaI GTAC 1 cut(s) 617
AfiI CCNNNNNNNGG 2 cut(s) 470, 610
AgsI TTSAA 2 cut(s) 282, 537
AjnI CCWGG 1 cut(s) 595
AluBI AGCT 3 cut(s) 164, 233, 560
AluI AGCT 3 cut(s) 164, 233, 560
Alw26I GTCTC 3 cut(s) 42, 247, 401
AoxI GGCC 5 cut(s) 23, 150, 375, 461, 605
ApeKI GCWGC 2 cut(s) 230, 482
AspLEI GCGC 1 cut(s) 397
AspS9I GGNCC 1 cut(s) 24
AsuC2I CCSGG 2 cut(s) 114, 604
AsuHPI GGTGA 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 604
BanI GGYRCC 1 cut(s) 599
BbvCI CCTCAGC 1 cut(s) 446
BbvI GCAGC 2 cut(s) 242, 494
BccI CCATC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 597
BcnI CCSGG 2 cut(s) 114, 604
BcoDI GTCTC 3 cut(s) 42, 247, 401
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 2 cut(s) 228, 468
BisI GCNGC 5 cut(s) 147, 150, 231, 398, 483
BlsI GCNGC 5 cut(s) 148, 151, 232, 399, 484
Bme1390I CCNGG 3 cut(s) 114, 597, 604
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 601
BmrFI CCNGG 3 cut(s) 114, 597, 604
BmsI GCATC 1 cut(s) 504
BpmI CTGGAG 2 cut(s) 186, 579
Bpu10I CCTNAGC 1 cut(s) 446
BpuEI CTTGAG 2 cut(s) 328, 364
BpuMI CCSGG 2 cut(s) 114, 604
Bsc4I CCNNNNNNNGG 2 cut(s) 470, 610
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 623
Bse3DI GCAATG 1 cut(s) 492
BseBI CCWGG 1 cut(s) 597
BseGI GGATG 1 cut(s) 514
BseLI CCNNNNNNNGG 2 cut(s) 470, 610
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 1 cut(s) 460
BseNI ACTGG 1 cut(s) 623
BseSI GKGCMC 1 cut(s) 604
BseX3I CGGCCG 1 cut(s) 150
BseXI GCAGC 2 cut(s) 242, 494
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 5 cut(s) 25, 152, 377, 463, 607
BshNI GGYRCC 1 cut(s) 599
BsiEI CGRYCG 1 cut(s) 153
BsiSI CCGG 4 cut(s) 113, 153, 236, 604
BslI CCNNNNNNNGG 2 cut(s) 470, 610
BsmAI GTCTC 3 cut(s) 42, 247, 401
BsmBI CGTCTC 1 cut(s) 42
BsnI GGCC 5 cut(s) 25, 152, 377, 463, 607
Bsp1286I GDGCHC 1 cut(s) 604
BspACI CCGC 4 cut(s) 146, 149, 156, 398
BspANI GGCC 5 cut(s) 25, 152, 377, 463, 607
BspCNI CTCAG 1 cut(s) 459
BspLI GGNNCC 1 cut(s) 601
BspMAI CTGCAG 2 cut(s) 232, 472
BspT107I GGYRCC 1 cut(s) 599
BsrDI GCAATG 1 cut(s) 492
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 1 cut(s) 623
BssAI RCCGGY 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 597
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 3 cut(s) 6, 154, 179
BstDEI CTNAG 2 cut(s) 92, 446
BstENI CCTNNNNNAGG 1 cut(s) 468
BstF5I GGATG 1 cut(s) 514
BstHHI GCGC 1 cut(s) 397
BstMAI GTCTC 3 cut(s) 42, 247, 401
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 8 cut(s) 22, 230, 236, 318, 434, 482, 488, 566
BstNI CCWGG 1 cut(s) 597
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 3 cut(s) 112, 595, 602
BstSFI CTRYAG 2 cut(s) 228, 468
BstSLI GKGCMC 1 cut(s) 604
BstV1I GCAGC 2 cut(s) 242, 494
BstZI CGGCCG 1 cut(s) 150
BsuRI GGCC 5 cut(s) 25, 152, 377, 463, 607
BtsCI GGATG 1 cut(s) 514
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 3 cut(s) 6, 154, 179
CfoI GCGC 1 cut(s) 397
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 616
CspCI CAANNNNNGTGG 4 cut(s) 49, 84, 369, 404
CviAII CATG 1 cut(s) 178
CviQI GTAC 1 cut(s) 616
DdeI CTNAG 2 cut(s) 92, 446
EaeI YGGCCR 2 cut(s) 150, 605
EagI CGGCCG 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
EciI GGCGGA 1 cut(s) 171
EclXI CGGCCG 1 cut(s) 150
Eco32I GATATC 1 cut(s) 98
Eco52I CGGCCG 1 cut(s) 150
EcoNI CCTNNNNNAGG 1 cut(s) 468
EcoRII CCWGG 1 cut(s) 595
EcoRV GATATC 1 cut(s) 98
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 1 cut(s) 181
FaiI YATR 3 cut(s) 106, 179, 366
FatI CATG 1 cut(s) 177
Fnu4HI GCNGC 5 cut(s) 147, 150, 231, 398, 483
FokI GGATG 1 cut(s) 521
Fsp4HI GCNGC 5 cut(s) 147, 150, 231, 398, 483
FspBI CTAG 1 cut(s) 123
GlaI GCGC 1 cut(s) 396
GluI GCNGC 5 cut(s) 147, 150, 231, 398, 483
GsuI CTGGAG 2 cut(s) 186, 579
HaeIII GGCC 5 cut(s) 25, 152, 377, 463, 607
HapII CCGG 4 cut(s) 113, 153, 236, 604
HhaI GCGC 1 cut(s) 397
Hin1II CATG 1 cut(s) 181
Hin6I GCGC 1 cut(s) 395
HinP1I GCGC 1 cut(s) 395
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HpaII CCGG 4 cut(s) 113, 153, 236, 604
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 3 cut(s) 293, 300, 329
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 2 cut(s) 317, 455
HpyAV CCTTC 3 cut(s) 221, 450, 474
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 4 cut(s) 35, 248, 387, 453
HpyCH4V TGCA 6 cut(s) 4, 181, 230, 470, 482, 548
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 230, 236, 318, 434, 482, 488, 566
HpyF3I CTNAG 2 cut(s) 92, 446
HpySE526I ACGT 4 cut(s) 35, 248, 387, 453
Hsp92II CATG 1 cut(s) 181
HspAI GCGC 1 cut(s) 395
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
LmnI GCTCC 3 cut(s) 238, 442, 557
Lsp1109I GCAGC 2 cut(s) 242, 494
LweI GCATC 1 cut(s) 504
MaeI CTAG 1 cut(s) 123
MaeII ACGT 4 cut(s) 35, 248, 387, 453
MboII GAAGA 9 cut(s) 32, 258, 261, 264, 267, 270, 313, 354, 423
MfeI CAATTG 1 cut(s) 543
MhlI GDGCHC 1 cut(s) 604
MluCI AATT 3 cut(s) 282, 361, 543
MnlI CCTC 9 cut(s) 37, 57, 73, 93, 180, 388, 455, 584, 601
MroNI GCCGGC 1 cut(s) 152
MslI CAYNNNNRTG 2 cut(s) 182, 219
MspI CCGG 4 cut(s) 113, 153, 236, 604
MspR9I CCNGG 3 cut(s) 114, 597, 604
MunI CAATTG 1 cut(s) 543
MvaI CCWGG 1 cut(s) 597
MwoI GCNNNNNNNGC 8 cut(s) 22, 230, 236, 318, 434, 482, 488, 566
NaeI GCCGGC 1 cut(s) 154
NciI CCSGG 2 cut(s) 114, 604
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 1 cut(s) 601
NspI RCATGY 1 cut(s) 181
PaeI GCATGC 1 cut(s) 181
PdiI GCCGGC 1 cut(s) 154
PkrI GCNGC 5 cut(s) 148, 151, 232, 399, 484
Psp6I CCWGG 1 cut(s) 595
PspGI CCWGG 1 cut(s) 595
PspN4I GGNNCC 1 cut(s) 601
PspPI GGNCC 1 cut(s) 24
PstI CTGCAG 2 cut(s) 232, 472
RsaI GTAC 1 cut(s) 617
RsaNI GTAC 1 cut(s) 616
RseI CAYNNNNRTG 2 cut(s) 182, 219
SatI GCNGC 5 cut(s) 147, 150, 231, 398, 483
Sau96I GGNCC 1 cut(s) 24
ScrFI CCNGG 3 cut(s) 114, 597, 604
SduI GDGCHC 1 cut(s) 604
SfaNI GCATC 1 cut(s) 504
SfcI CTRYAG 2 cut(s) 228, 468
SmiMI CAYNNNNRTG 2 cut(s) 182, 219
SmlI CTYRAG 2 cut(s) 307, 379
SmoI CTYRAG 2 cut(s) 307, 379
SphI GCATGC 1 cut(s) 181
Sse9I AATT 3 cut(s) 282, 361, 543
SsiI CCGC 4 cut(s) 146, 149, 156, 398
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 3 cut(s) 112, 595, 602
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 4 cut(s) 38, 251, 390, 456
TaqI TCGA 1 cut(s) 43
TasI AATT 3 cut(s) 282, 361, 543
TauI GCSGC 3 cut(s) 149, 152, 400
TscAI CASTG 1 cut(s) 226
TseI GCWGC 2 cut(s) 230, 482
TspDTI ATGAA 1 cut(s) 203
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 1 cut(s) 226
XagI CCTNNNNNAGG 1 cut(s) 468
XceI RCATGY 1 cut(s) 181
XcmI CCANNNNNNNNNTGG 1 cut(s) 615
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.